data_7RVM # _model_server_result.job_id KBwT3CObX7O7frXt_rbAXA _model_server_result.datetime_utc '2024-10-19 12:36:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7RVM # _exptl.entry_id 7RVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.11 _cell.angle_gamma 90 _cell.entry_id 7RVM _cell.length_a 51.98 _cell.length_b 81.35 _cell.length_c 89.634 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -51.98 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id 7V2 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 7V2 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.822 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H42 N4 O6' _chem_comp.formula_weight 518.646 _chem_comp.id 7V2 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 7V2 doub 1 n y C2 C3 7V2 sing 2 n y C1 C6 7V2 sing 3 n y C31 C30 7V2 sing 4 n n C3 C4 7V2 doub 5 n y C6 C5 7V2 doub 6 n y O29 C9 7V2 doub 7 n n C32 C30 7V2 sing 8 n n C13 C35 7V2 sing 9 n n O38 C15 7V2 doub 10 n n C30 C11 7V2 sing 11 n n C11 C12 7V2 sing 12 n n C11 N10 7V2 sing 13 n n C4 C5 7V2 sing 14 n y C4 C7 7V2 sing 15 n n N13 C12 7V2 sing 16 n n N13 C14 7V2 sing 17 n n C34 C35 7V2 sing 18 n n C34 C14 7V2 sing 19 n n C37 C35 7V2 sing 20 n n C9 N10 7V2 sing 21 n n C9 O8 7V2 sing 22 n n C35 C36 7V2 sing 23 n n C12 O33 7V2 doub 24 n n C15 C14 7V2 sing 25 n n C15 N16 7V2 sing 26 n n O8 C7 7V2 sing 27 n n C21 C22 7V2 sing 28 n n C21 C20 7V2 sing 29 n n C22 N23 7V2 sing 30 n n N16 C17 7V2 sing 31 n n C17 C8 7V2 sing 32 n n C17 C19 7V2 sing 33 n n O9 C8 7V2 sing 34 n n C20 C19 7V2 sing 35 n n C20 C24 7V2 sing 36 n n N23 C24 7V2 sing 37 n n C24 O26 7V2 doub 38 n n C1 H1 7V2 sing 39 n n C11 H2 7V2 sing 40 n n C13 H3 7V2 sing 41 n n C13 H4 7V2 sing 42 n n C13 H5 7V2 sing 43 n n C14 H6 7V2 sing 44 n n C17 H7 7V2 sing 45 n n C19 H8 7V2 sing 46 n n C19 H9 7V2 sing 47 n n C2 H10 7V2 sing 48 n n C20 H11 7V2 sing 49 n n C21 H12 7V2 sing 50 n n C21 H13 7V2 sing 51 n n C22 H14 7V2 sing 52 n n C22 H15 7V2 sing 53 n n C3 H16 7V2 sing 54 n n C30 H17 7V2 sing 55 n n C31 H18 7V2 sing 56 n n C31 H19 7V2 sing 57 n n C31 H20 7V2 sing 58 n n C32 H21 7V2 sing 59 n n C32 H22 7V2 sing 60 n n C32 H23 7V2 sing 61 n n C34 H24 7V2 sing 62 n n C34 H25 7V2 sing 63 n n C36 H26 7V2 sing 64 n n C36 H27 7V2 sing 65 n n C36 H28 7V2 sing 66 n n C37 H29 7V2 sing 67 n n C37 H30 7V2 sing 68 n n C37 H31 7V2 sing 69 n n C5 H32 7V2 sing 70 n n C6 H33 7V2 sing 71 n n C7 H34 7V2 sing 72 n n C7 H35 7V2 sing 73 n n C8 H36 7V2 sing 74 n n C8 H37 7V2 sing 75 n n N10 H38 7V2 sing 76 n n N13 H39 7V2 sing 77 n n N16 H40 7V2 sing 78 n n N23 H41 7V2 sing 79 n n O9 H42 7V2 sing 80 n n # _atom_sites.entry_id 7RVM _atom_sites.fract_transf_matrix[1][1] 0.019238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7V2 A 1 401 401 7V2 i43 . C 3 HOH A 1 501 121 HOH HOH . C 3 HOH A 2 502 13 HOH HOH . C 3 HOH A 3 503 18 HOH HOH . C 3 HOH A 4 504 88 HOH HOH . C 3 HOH A 5 505 85 HOH HOH . C 3 HOH A 6 506 9 HOH HOH . C 3 HOH A 7 507 98 HOH HOH . C 3 HOH A 8 508 63 HOH HOH . C 3 HOH A 9 509 72 HOH HOH . C 3 HOH A 10 510 82 HOH HOH . C 3 HOH A 11 511 16 HOH HOH . C 3 HOH A 12 512 50 HOH HOH . C 3 HOH A 13 513 32 HOH HOH . C 3 HOH A 14 514 65 HOH HOH . C 3 HOH A 15 515 30 HOH HOH . C 3 HOH A 16 516 80 HOH HOH . C 3 HOH A 17 517 46 HOH HOH . C 3 HOH A 18 518 40 HOH HOH . C 3 HOH A 19 519 94 HOH HOH . C 3 HOH A 20 520 36 HOH HOH . C 3 HOH A 21 521 8 HOH HOH . C 3 HOH A 22 522 54 HOH HOH . C 3 HOH A 23 523 78 HOH HOH . C 3 HOH A 24 524 97 HOH HOH . C 3 HOH A 25 525 61 HOH HOH . C 3 HOH A 26 526 124 HOH HOH . C 3 HOH A 27 527 14 HOH HOH . C 3 HOH A 28 528 59 HOH HOH . C 3 HOH A 29 529 5 HOH HOH . C 3 HOH A 30 530 33 HOH HOH . C 3 HOH A 31 531 75 HOH HOH . C 3 HOH A 32 532 37 HOH HOH . C 3 HOH A 33 533 52 HOH HOH . C 3 HOH A 34 534 126 HOH HOH . C 3 HOH A 35 535 83 HOH HOH . C 3 HOH A 36 536 24 HOH HOH . C 3 HOH A 37 537 31 HOH HOH . C 3 HOH A 38 538 117 HOH HOH . C 3 HOH A 39 539 2 HOH HOH . C 3 HOH A 40 540 49 HOH HOH . C 3 HOH A 41 541 79 HOH HOH . C 3 HOH A 42 542 44 HOH HOH . C 3 HOH A 43 543 74 HOH HOH . C 3 HOH A 44 544 116 HOH HOH . C 3 HOH A 45 545 29 HOH HOH . C 3 HOH A 46 546 26 HOH HOH . C 3 HOH A 47 547 45 HOH HOH . C 3 HOH A 48 548 3 HOH HOH . C 3 HOH A 49 549 86 HOH HOH . C 3 HOH A 50 550 43 HOH HOH . C 3 HOH A 51 551 67 HOH HOH . C 3 HOH A 52 552 87 HOH HOH . C 3 HOH A 53 553 48 HOH HOH . C 3 HOH A 54 554 92 HOH HOH . C 3 HOH A 55 555 15 HOH HOH . C 3 HOH A 56 556 53 HOH HOH . C 3 HOH A 57 557 1 HOH HOH . C 3 HOH A 58 558 51 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 114 HOH HOH . C 3 HOH A 61 561 4 HOH HOH . C 3 HOH A 62 562 108 HOH HOH . C 3 HOH A 63 563 25 HOH HOH . C 3 HOH A 64 564 12 HOH HOH . C 3 HOH A 65 565 57 HOH HOH . C 3 HOH A 66 566 28 HOH HOH . C 3 HOH A 67 567 100 HOH HOH . C 3 HOH A 68 568 89 HOH HOH . C 3 HOH A 69 569 118 HOH HOH . C 3 HOH A 70 570 105 HOH HOH . C 3 HOH A 71 571 107 HOH HOH . C 3 HOH A 72 572 10 HOH HOH . C 3 HOH A 73 573 81 HOH HOH . C 3 HOH A 74 574 42 HOH HOH . C 3 HOH A 75 575 19 HOH HOH . C 3 HOH A 76 576 17 HOH HOH . C 3 HOH A 77 577 55 HOH HOH . C 3 HOH A 78 578 122 HOH HOH . C 3 HOH A 79 579 103 HOH HOH . C 3 HOH A 80 580 7 HOH HOH . C 3 HOH A 81 581 6 HOH HOH . C 3 HOH A 82 582 115 HOH HOH . C 3 HOH A 83 583 21 HOH HOH . C 3 HOH A 84 584 130 HOH HOH . C 3 HOH A 85 585 125 HOH HOH . C 3 HOH A 86 586 62 HOH HOH . C 3 HOH A 87 587 41 HOH HOH . C 3 HOH A 88 588 123 HOH HOH . C 3 HOH A 89 589 69 HOH HOH . C 3 HOH A 90 590 84 HOH HOH . C 3 HOH A 91 591 111 HOH HOH . C 3 HOH A 92 592 39 HOH HOH . C 3 HOH A 93 593 56 HOH HOH . C 3 HOH A 94 594 27 HOH HOH . C 3 HOH A 95 595 38 HOH HOH . C 3 HOH A 96 596 68 HOH HOH . C 3 HOH A 97 597 11 HOH HOH . C 3 HOH A 98 598 23 HOH HOH . C 3 HOH A 99 599 70 HOH HOH . C 3 HOH A 100 600 95 HOH HOH . C 3 HOH A 101 601 22 HOH HOH . C 3 HOH A 102 602 102 HOH HOH . C 3 HOH A 103 603 34 HOH HOH . C 3 HOH A 104 604 47 HOH HOH . C 3 HOH A 105 605 104 HOH HOH . C 3 HOH A 106 606 35 HOH HOH . C 3 HOH A 107 607 127 HOH HOH . C 3 HOH A 108 608 20 HOH HOH . C 3 HOH A 109 609 113 HOH HOH . C 3 HOH A 110 610 128 HOH HOH . C 3 HOH A 111 611 112 HOH HOH . C 3 HOH A 112 612 66 HOH HOH . C 3 HOH A 113 613 110 HOH HOH . C 3 HOH A 114 614 91 HOH HOH . C 3 HOH A 115 615 93 HOH HOH . C 3 HOH A 116 616 73 HOH HOH . C 3 HOH A 117 617 120 HOH HOH . C 3 HOH A 118 618 64 HOH HOH . C 3 HOH A 119 619 58 HOH HOH . C 3 HOH A 120 620 71 HOH HOH . C 3 HOH A 121 621 77 HOH HOH . C 3 HOH A 122 622 101 HOH HOH . C 3 HOH A 123 623 109 HOH HOH . C 3 HOH A 124 624 131 HOH HOH . C 3 HOH A 125 625 133 HOH HOH . C 3 HOH A 126 626 99 HOH HOH . C 3 HOH A 127 627 106 HOH HOH . C 3 HOH A 128 628 132 HOH HOH . C 3 HOH A 129 629 119 HOH HOH . C 3 HOH A 130 630 96 HOH HOH . C 3 HOH A 131 631 90 HOH HOH . C 3 HOH A 132 632 76 HOH HOH . C 3 HOH A 133 633 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7V2 . . . B 2 -5.535 -22.719 -21.136 1 58.46 ? C1 7V2 401 A 1 HETATM 2 C C11 7V2 . . . B 2 -9.577 -17.276 -18.909 1 45.86 ? C11 7V2 401 A 1 HETATM 3 C C12 7V2 . . . B 2 -9.793 -15.96 -18.241 1 46.09 ? C12 7V2 401 A 1 HETATM 4 C C13 7V2 . . . B 2 -6.078 -11.797 -19.264 1 53.2 ? C13 7V2 401 A 1 HETATM 5 C C14 7V2 . . . B 2 -9.374 -13.592 -18.165 1 45.68 ? C14 7V2 401 A 1 HETATM 6 C C15 7V2 . . . B 2 -10.774 -13.014 -18.196 1 44.03 ? C15 7V2 401 A 1 HETATM 7 C C17 7V2 . . . B 2 -12.659 -12.06 -16.963 1 42.12 ? C17 7V2 401 A 1 HETATM 8 C C19 7V2 . . . B 2 -13.482 -12.846 -15.939 1 36.94 ? C19 7V2 401 A 1 HETATM 9 C C2 7V2 . . . B 2 -5.499 -21.329 -21.219 1 61.23 ? C2 7V2 401 A 1 HETATM 10 C C20 7V2 . . . B 2 -13.657 -14.275 -16.427 1 36.21 ? C20 7V2 401 A 1 HETATM 11 C C21 7V2 . . . B 2 -14.518 -14.382 -17.685 1 40.2 ? C21 7V2 401 A 1 HETATM 12 C C22 7V2 . . . B 2 -15.275 -15.701 -17.514 1 39.02 ? C22 7V2 401 A 1 HETATM 13 C C24 7V2 . . . B 2 -14.411 -15.117 -15.441 1 36.16 ? C24 7V2 401 A 1 HETATM 14 C C3 7V2 . . . B 2 -5.79 -20.563 -20.093 1 61.03 ? C3 7V2 401 A 1 HETATM 15 C C30 7V2 . . . B 2 -10.901 -18.01 -19.15 1 49.71 ? C30 7V2 401 A 1 HETATM 16 C C31 7V2 . . . B 2 -10.736 -19.064 -20.247 1 48.25 ? C31 7V2 401 A 1 HETATM 17 C C32 7V2 . . . B 2 -12.025 -17.046 -19.53 1 48.33 ? C32 7V2 401 A 1 HETATM 18 C C34 7V2 . . . B 2 -8.384 -12.611 -18.821 1 44.73 ? C34 7V2 401 A 1 HETATM 19 C C35 7V2 . . . B 2 -6.908 -12.761 -18.408 1 47.86 ? C35 7V2 401 A 1 HETATM 20 C C36 7V2 . . . B 2 -6.71 -12.417 -16.935 1 45.57 ? C36 7V2 401 A 1 HETATM 21 C C37 7V2 . . . B 2 -6.367 -14.17 -18.646 1 50.64 ? C37 7V2 401 A 1 HETATM 22 C C4 7V2 . . . B 2 -6.121 -21.17 -18.876 1 55.85 ? C4 7V2 401 A 1 HETATM 23 C C5 7V2 . . . B 2 -6.152 -22.561 -18.803 1 56.05 ? C5 7V2 401 A 1 HETATM 24 C C6 7V2 . . . B 2 -5.862 -23.331 -19.929 1 53.41 ? C6 7V2 401 A 1 HETATM 25 C C7 7V2 . . . B 2 -6.451 -20.367 -17.631 1 56.5 ? C7 7V2 401 A 1 HETATM 26 C C8 7V2 . . . B 2 -12.635 -10.582 -16.584 1 44.35 ? C8 7V2 401 A 1 HETATM 27 C C9 7V2 . . . B 2 -7.395 -18.235 -18.622 1 55.37 ? C9 7V2 401 A 1 HETATM 28 N N10 7V2 . . . B 2 -8.624 -18.05 -18.125 1 47.08 ? N10 7V2 401 A 1 HETATM 29 N N13 7V2 . . . B 2 -9.35 -14.868 -18.866 1 46.16 ? N13 7V2 401 A 1 HETATM 30 N N16 7V2 . . . B 2 -11.297 -12.575 -17.045 1 40.02 ? N16 7V2 401 A 1 HETATM 31 N N23 7V2 . . . B 2 -15.23 -15.948 -16.08 1 36.93 ? N23 7V2 401 A 1 HETATM 32 O O26 7V2 . . . B 2 -14.254 -15.019 -14.239 1 34.17 ? O26 7V2 401 A 1 HETATM 33 O O29 7V2 . . . B 2 -7.07 -17.827 -19.735 1 56.4 ? O29 7V2 401 A 1 HETATM 34 O O33 7V2 . . . B 2 -10.335 -15.92 -17.162 1 35.34 ? O33 7V2 401 A 1 HETATM 35 O O38 7V2 . . . B 2 -11.383 -12.956 -19.26 1 46.53 ? O38 7V2 401 A 1 HETATM 36 O O8 7V2 . . . B 2 -6.4 -18.947 -17.824 1 57.29 ? O8 7V2 401 A 1 HETATM 37 O O9 7V2 . . . B 2 -13.908 -10.018 -16.938 1 46.17 ? O9 7V2 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #