data_7RVN # _model_server_result.job_id i08FjGZsB7pf5UxAv1p2qA _model_server_result.datetime_utc '2024-11-21 08:57:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7RVN # _exptl.entry_id 7RVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.3 _cell.angle_gamma 90 _cell.entry_id 7RVN _cell.length_a 51.92 _cell.length_b 81.18 _cell.length_c 90.086 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 51.92 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 127 A GLN 127 1_555 A N CSO 128 A CSO 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CSO 128 A CSO 128 1_555 A N ALA 129 A ALA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A SG CYS 145 A CYS 145 1_555 B C8 7VB . A 7VB 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale4 A C GLN 299 A GLN 299 1_555 A N CSO 300 A CSO 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C CSO 300 A CSO 300 1_555 A N SER 301 A SER 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 172 n n S C1 DMS sing 173 n n S C2 DMS sing 174 n n C1 H11 DMS sing 175 n n C1 H12 DMS sing 176 n n C1 H13 DMS sing 177 n n C2 H21 DMS sing 178 n n C2 H22 DMS sing 179 n n C2 H23 DMS sing 180 n n # _atom_sites.entry_id 7RVN _atom_sites.fract_transf_matrix[1][1] 0.01926 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002125 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7VB A 1 401 401 7VB i42 . C 3 DMS A 1 402 301 DMS DMS . D 4 HOH A 1 501 144 HOH HOH . D 4 HOH A 2 502 167 HOH HOH . D 4 HOH A 3 503 82 HOH HOH . D 4 HOH A 4 504 127 HOH HOH . D 4 HOH A 5 505 81 HOH HOH . D 4 HOH A 6 506 143 HOH HOH . D 4 HOH A 7 507 69 HOH HOH . D 4 HOH A 8 508 37 HOH HOH . D 4 HOH A 9 509 43 HOH HOH . D 4 HOH A 10 510 77 HOH HOH . D 4 HOH A 11 511 171 HOH HOH . D 4 HOH A 12 512 36 HOH HOH . D 4 HOH A 13 513 45 HOH HOH . D 4 HOH A 14 514 54 HOH HOH . D 4 HOH A 15 515 155 HOH HOH . D 4 HOH A 16 516 133 HOH HOH . D 4 HOH A 17 517 78 HOH HOH . D 4 HOH A 18 518 174 HOH HOH . D 4 HOH A 19 519 40 HOH HOH . D 4 HOH A 20 520 48 HOH HOH . D 4 HOH A 21 521 110 HOH HOH . D 4 HOH A 22 522 11 HOH HOH . D 4 HOH A 23 523 162 HOH HOH . D 4 HOH A 24 524 132 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 176 HOH HOH . D 4 HOH A 27 527 73 HOH HOH . D 4 HOH A 28 528 114 HOH HOH . D 4 HOH A 29 529 108 HOH HOH . D 4 HOH A 30 530 166 HOH HOH . D 4 HOH A 31 531 41 HOH HOH . D 4 HOH A 32 532 19 HOH HOH . D 4 HOH A 33 533 49 HOH HOH . D 4 HOH A 34 534 61 HOH HOH . D 4 HOH A 35 535 103 HOH HOH . D 4 HOH A 36 536 26 HOH HOH . D 4 HOH A 37 537 129 HOH HOH . D 4 HOH A 38 538 147 HOH HOH . D 4 HOH A 39 539 6 HOH HOH . D 4 HOH A 40 540 38 HOH HOH . D 4 HOH A 41 541 92 HOH HOH . D 4 HOH A 42 542 44 HOH HOH . D 4 HOH A 43 543 134 HOH HOH . D 4 HOH A 44 544 136 HOH HOH . D 4 HOH A 45 545 33 HOH HOH . D 4 HOH A 46 546 24 HOH HOH . D 4 HOH A 47 547 20 HOH HOH . D 4 HOH A 48 548 80 HOH HOH . D 4 HOH A 49 549 107 HOH HOH . D 4 HOH A 50 550 160 HOH HOH . D 4 HOH A 51 551 39 HOH HOH . D 4 HOH A 52 552 75 HOH HOH . D 4 HOH A 53 553 3 HOH HOH . D 4 HOH A 54 554 86 HOH HOH . D 4 HOH A 55 555 115 HOH HOH . D 4 HOH A 56 556 57 HOH HOH . D 4 HOH A 57 557 151 HOH HOH . D 4 HOH A 58 558 121 HOH HOH . D 4 HOH A 59 559 95 HOH HOH . D 4 HOH A 60 560 18 HOH HOH . D 4 HOH A 61 561 62 HOH HOH . D 4 HOH A 62 562 67 HOH HOH . D 4 HOH A 63 563 106 HOH HOH . D 4 HOH A 64 564 1 HOH HOH . D 4 HOH A 65 565 7 HOH HOH . D 4 HOH A 66 566 31 HOH HOH . D 4 HOH A 67 567 2 HOH HOH . D 4 HOH A 68 568 89 HOH HOH . D 4 HOH A 69 569 117 HOH HOH . D 4 HOH A 70 570 13 HOH HOH . D 4 HOH A 71 571 156 HOH HOH . D 4 HOH A 72 572 150 HOH HOH . D 4 HOH A 73 573 83 HOH HOH . D 4 HOH A 74 574 70 HOH HOH . D 4 HOH A 75 575 66 HOH HOH . D 4 HOH A 76 576 68 HOH HOH . D 4 HOH A 77 577 21 HOH HOH . D 4 HOH A 78 578 124 HOH HOH . D 4 HOH A 79 579 4 HOH HOH . D 4 HOH A 80 580 22 HOH HOH . D 4 HOH A 81 581 102 HOH HOH . D 4 HOH A 82 582 14 HOH HOH . D 4 HOH A 83 583 76 HOH HOH . D 4 HOH A 84 584 100 HOH HOH . D 4 HOH A 85 585 27 HOH HOH . D 4 HOH A 86 586 32 HOH HOH . D 4 HOH A 87 587 178 HOH HOH . D 4 HOH A 88 588 63 HOH HOH . D 4 HOH A 89 589 87 HOH HOH . D 4 HOH A 90 590 93 HOH HOH . D 4 HOH A 91 591 84 HOH HOH . D 4 HOH A 92 592 28 HOH HOH . D 4 HOH A 93 593 122 HOH HOH . D 4 HOH A 94 594 173 HOH HOH . D 4 HOH A 95 595 125 HOH HOH . D 4 HOH A 96 596 55 HOH HOH . D 4 HOH A 97 597 10 HOH HOH . D 4 HOH A 98 598 60 HOH HOH . D 4 HOH A 99 599 99 HOH HOH . D 4 HOH A 100 600 46 HOH HOH . D 4 HOH A 101 601 123 HOH HOH . D 4 HOH A 102 602 85 HOH HOH . D 4 HOH A 103 603 23 HOH HOH . D 4 HOH A 104 604 29 HOH HOH . D 4 HOH A 105 605 8 HOH HOH . D 4 HOH A 106 606 5 HOH HOH . D 4 HOH A 107 607 50 HOH HOH . D 4 HOH A 108 608 72 HOH HOH . D 4 HOH A 109 609 90 HOH HOH . D 4 HOH A 110 610 15 HOH HOH . D 4 HOH A 111 611 158 HOH HOH . D 4 HOH A 112 612 118 HOH HOH . D 4 HOH A 113 613 153 HOH HOH . D 4 HOH A 114 614 138 HOH HOH . D 4 HOH A 115 615 52 HOH HOH . D 4 HOH A 116 616 161 HOH HOH . D 4 HOH A 117 617 128 HOH HOH . D 4 HOH A 118 618 12 HOH HOH . D 4 HOH A 119 619 120 HOH HOH . D 4 HOH A 120 620 34 HOH HOH . D 4 HOH A 121 621 97 HOH HOH . D 4 HOH A 122 622 30 HOH HOH . D 4 HOH A 123 623 53 HOH HOH . D 4 HOH A 124 624 47 HOH HOH . D 4 HOH A 125 625 16 HOH HOH . D 4 HOH A 126 626 58 HOH HOH . D 4 HOH A 127 627 170 HOH HOH . D 4 HOH A 128 628 17 HOH HOH . D 4 HOH A 129 629 9 HOH HOH . D 4 HOH A 130 630 91 HOH HOH . D 4 HOH A 131 631 159 HOH HOH . D 4 HOH A 132 632 35 HOH HOH . D 4 HOH A 133 633 130 HOH HOH . D 4 HOH A 134 634 64 HOH HOH . D 4 HOH A 135 635 154 HOH HOH . D 4 HOH A 136 636 163 HOH HOH . D 4 HOH A 137 637 126 HOH HOH . D 4 HOH A 138 638 65 HOH HOH . D 4 HOH A 139 639 109 HOH HOH . D 4 HOH A 140 640 96 HOH HOH . D 4 HOH A 141 641 79 HOH HOH . D 4 HOH A 142 642 88 HOH HOH . D 4 HOH A 143 643 139 HOH HOH . D 4 HOH A 144 644 111 HOH HOH . D 4 HOH A 145 645 177 HOH HOH . D 4 HOH A 146 646 146 HOH HOH . D 4 HOH A 147 647 149 HOH HOH . D 4 HOH A 148 648 101 HOH HOH . D 4 HOH A 149 649 51 HOH HOH . D 4 HOH A 150 650 98 HOH HOH . D 4 HOH A 151 651 137 HOH HOH . D 4 HOH A 152 652 119 HOH HOH . D 4 HOH A 153 653 179 HOH HOH . D 4 HOH A 154 654 148 HOH HOH . D 4 HOH A 155 655 145 HOH HOH . D 4 HOH A 156 656 168 HOH HOH . D 4 HOH A 157 657 59 HOH HOH . D 4 HOH A 158 658 135 HOH HOH . D 4 HOH A 159 659 142 HOH HOH . D 4 HOH A 160 660 131 HOH HOH . D 4 HOH A 161 661 164 HOH HOH . D 4 HOH A 162 662 71 HOH HOH . D 4 HOH A 163 663 94 HOH HOH . D 4 HOH A 164 664 116 HOH HOH . D 4 HOH A 165 665 165 HOH HOH . D 4 HOH A 166 666 141 HOH HOH . D 4 HOH A 167 667 157 HOH HOH . D 4 HOH A 168 668 113 HOH HOH . D 4 HOH A 169 669 105 HOH HOH . D 4 HOH A 170 670 175 HOH HOH . D 4 HOH A 171 671 169 HOH HOH . D 4 HOH A 172 672 152 HOH HOH . D 4 HOH A 173 673 42 HOH HOH . D 4 HOH A 174 674 104 HOH HOH . D 4 HOH A 175 675 140 HOH HOH . D 4 HOH A 176 676 74 HOH HOH . D 4 HOH A 177 677 112 HOH HOH . D 4 HOH A 178 678 56 HOH HOH . D 4 HOH A 179 679 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -3.615 1.978 11.632 0 32.24 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 -3.753 1.78 10.157 0 31.04 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 -4.704 3.327 12.163 0 38.13 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 -4.399 0.588 12.494 0 33.9 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #