data_7RVQ # _model_server_result.job_id jh6e-R1c2QHNxQWkBCw4AA _model_server_result.datetime_utc '2024-11-16 10:28:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7RVQ # _exptl.entry_id 7RVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 576.725 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.5 _cell.angle_gamma 90 _cell.entry_id 7RVQ _cell.length_a 56.339 _cell.length_b 81.552 _cell.length_c 86.172 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 127 A GLN 127 1_555 A N CSO 128 A CSO 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSO 128 A CSO 128 1_555 A N ALA 129 A ALA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A SG CYS 145 A CYS 145 1_555 B C17 7VW . A 7VW 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? covale ? covale4 A C GLN 299 A GLN 299 1_555 A N CSO 300 A CSO 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C CSO 300 A CSO 300 1_555 A N SER 301 A SER 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C30 H48 N4 O7' _chem_comp.formula_weight 576.725 _chem_comp.id 7VW _chem_comp.mon_nstd_flag . _chem_comp.name N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C22 7VW doub 1 n n C22 N3 7VW sing 2 n n C22 C19 7VW sing 3 n n N3 C21 7VW sing 4 n n C18 C19 7VW sing 5 n n C18 C16 7VW sing 6 n n O6 C17 7VW sing 7 n n C27 C15 7VW sing 8 n n C19 C20 7VW sing 9 n n C17 C16 7VW sing 10 n n O3 C9 7VW doub 11 n n N2 C16 7VW sing 12 n n N2 C13 7VW sing 13 n n O C6 7VW sing 14 n n O C7 7VW sing 15 n n C21 C20 7VW sing 16 n n C6 C4 7VW sing 17 n n C3 C2 7VW doub 18 n y C3 C4 7VW sing 19 n y C12 C13 7VW sing 20 n n C12 N1 7VW sing 21 n n C12 C14 7VW sing 22 n n C9 N1 7VW sing 23 n n C9 C8 7VW sing 24 n n N C7 7VW sing 25 n n N C8 7VW sing 26 n n C15 C29 7VW sing 27 n n C15 C14 7VW sing 28 n n C15 C28 7VW sing 29 n n C13 O4 7VW doub 30 n n C25 C23 7VW sing 31 n n C7 O1 7VW doub 32 n n C2 C1 7VW sing 33 n y C4 C5 7VW doub 34 n y C8 C10 7VW sing 35 n n C24 C23 7VW sing 36 n n C10 O2 7VW sing 37 n n C10 C11 7VW sing 38 n n C23 O2 7VW sing 39 n n C23 C26 7VW sing 40 n n C1 C 7VW doub 41 n y C5 C 7VW sing 42 n y N H1 7VW sing 43 n n C H2 7VW sing 44 n n C1 H3 7VW sing 45 n n C10 H4 7VW sing 46 n n C11 H5 7VW sing 47 n n C11 H6 7VW sing 48 n n C11 H7 7VW sing 49 n n C12 H8 7VW sing 50 n n C14 H9 7VW sing 51 n n C14 H10 7VW sing 52 n n C16 H11 7VW sing 53 n n C17 H12 7VW sing 54 n n C17 H13 7VW sing 55 n n C18 H14 7VW sing 56 n n C18 H15 7VW sing 57 n n C19 H16 7VW sing 58 n n C2 H17 7VW sing 59 n n C20 H18 7VW sing 60 n n C20 H19 7VW sing 61 n n C21 H20 7VW sing 62 n n C24 H21 7VW sing 63 n n C24 H22 7VW sing 64 n n C24 H23 7VW sing 65 n n C25 H24 7VW sing 66 n n C25 H25 7VW sing 67 n n C25 H26 7VW sing 68 n n C26 H27 7VW sing 69 n n C26 H28 7VW sing 70 n n C26 H29 7VW sing 71 n n C27 H30 7VW sing 72 n n C27 H31 7VW sing 73 n n C27 H32 7VW sing 74 n n C28 H33 7VW sing 75 n n C28 H34 7VW sing 76 n n C28 H35 7VW sing 77 n n C29 H36 7VW sing 78 n n C29 H37 7VW sing 79 n n C29 H38 7VW sing 80 n n C3 H39 7VW sing 81 n n C5 H40 7VW sing 82 n n C6 H41 7VW sing 83 n n C6 H42 7VW sing 84 n n C8 H43 7VW sing 85 n n N1 H44 7VW sing 86 n n N2 H45 7VW sing 87 n n O6 H46 7VW sing 88 n n C21 H47 7VW sing 89 n n N3 H48 7VW sing 90 n n # _atom_sites.entry_id 7RVQ _atom_sites.fract_transf_matrix[1][1] 0.01775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002336 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7VW A 1 401 401 7VW i33 . C 3 HOH A 1 501 23 HOH HOH . C 3 HOH A 2 502 3 HOH HOH . C 3 HOH A 3 503 35 HOH HOH . C 3 HOH A 4 504 2 HOH HOH . C 3 HOH A 5 505 44 HOH HOH . C 3 HOH A 6 506 17 HOH HOH . C 3 HOH A 7 507 38 HOH HOH . C 3 HOH A 8 508 27 HOH HOH . C 3 HOH A 9 509 18 HOH HOH . C 3 HOH A 10 510 20 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 14 HOH HOH . C 3 HOH A 13 513 6 HOH HOH . C 3 HOH A 14 514 24 HOH HOH . C 3 HOH A 15 515 25 HOH HOH . C 3 HOH A 16 516 10 HOH HOH . C 3 HOH A 17 517 16 HOH HOH . C 3 HOH A 18 518 36 HOH HOH . C 3 HOH A 19 519 31 HOH HOH . C 3 HOH A 20 520 15 HOH HOH . C 3 HOH A 21 521 41 HOH HOH . C 3 HOH A 22 522 32 HOH HOH . C 3 HOH A 23 523 4 HOH HOH . C 3 HOH A 24 524 9 HOH HOH . C 3 HOH A 25 525 1 HOH HOH . C 3 HOH A 26 526 40 HOH HOH . C 3 HOH A 27 527 30 HOH HOH . C 3 HOH A 28 528 5 HOH HOH . C 3 HOH A 29 529 28 HOH HOH . C 3 HOH A 30 530 43 HOH HOH . C 3 HOH A 31 531 7 HOH HOH . C 3 HOH A 32 532 33 HOH HOH . C 3 HOH A 33 533 19 HOH HOH . C 3 HOH A 34 534 13 HOH HOH . C 3 HOH A 35 535 22 HOH HOH . C 3 HOH A 36 536 37 HOH HOH . C 3 HOH A 37 537 42 HOH HOH . C 3 HOH A 38 538 29 HOH HOH . C 3 HOH A 39 539 8 HOH HOH . C 3 HOH A 40 540 34 HOH HOH . C 3 HOH A 41 541 12 HOH HOH . C 3 HOH A 42 542 26 HOH HOH . C 3 HOH A 43 543 39 HOH HOH . C 3 HOH A 44 544 21 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 7VW . . . B 2 -18.624 -8.433 17.181 1 37.83 ? N 7VW 401 A 1 HETATM 2 C C 7VW . . . B 2 -21.805 -12.31 19.818 1 47.92 ? C 7VW 401 A 1 HETATM 3 O O 7VW . . . B 2 -20.804 -9.155 16.616 1 50.83 ? O 7VW 401 A 1 HETATM 4 C C1 7VW . . . B 2 -21.436 -13.429 19.091 1 45.33 ? C1 7VW 401 A 1 HETATM 5 C C10 7VW . . . B 2 -16.512 -8.175 18.296 1 43.55 ? C10 7VW 401 A 1 HETATM 6 C C11 7VW . . . B 2 -15.662 -7.21 19.114 1 36.56 ? C11 7VW 401 A 1 HETATM 7 C C12 7VW . . . B 2 -18.003 -3.847 17.093 1 48.9 ? C12 7VW 401 A 1 HETATM 8 C C13 7VW . . . B 2 -16.587 -3.349 17.226 1 47.85 ? C13 7VW 401 A 1 HETATM 9 C C14 7VW . . . B 2 -19.013 -2.939 17.807 1 52.93 ? C14 7VW 401 A 1 HETATM 10 C C15 7VW . . . B 2 -20.429 -2.961 17.205 1 54.13 ? C15 7VW 401 A 1 HETATM 11 C C16 7VW . . . B 2 -14.729 -2.034 16.305 1 56.93 ? C16 7VW 401 A 1 HETATM 12 C C17 7VW . . . B 2 -14.894 -0.542 15.937 1 50.59 ? C17 7VW 401 A 1 HETATM 13 C C18 7VW . . . B 2 -13.574 -2.678 15.531 1 38.18 ? C18 7VW 401 A 1 HETATM 14 C C19 7VW . . . B 2 -13.52 -4.15 15.931 1 38.15 ? C19 7VW 401 A 1 HETATM 15 C C2 7VW . . . B 2 -21.261 -13.365 17.711 1 51.44 ? C2 7VW 401 A 1 HETATM 16 C C20 7VW . . . B 2 -12.591 -4.349 17.12 1 45.27 ? C20 7VW 401 A 1 HETATM 17 C C21 7VW . . . B 2 -11.591 -5.434 16.699 1 45.43 ? C21 7VW 401 A 1 HETATM 18 C C22 7VW . . . B 2 -12.968 -5.068 14.878 1 45.54 ? C22 7VW 401 A 1 HETATM 19 C C23 7VW . . . B 2 -16.24 -10.568 18.602 1 45.96 ? C23 7VW 401 A 1 HETATM 20 C C24 7VW . . . B 2 -14.764 -10.374 18.234 1 42.86 ? C24 7VW 401 A 1 HETATM 21 C C25 7VW . . . B 2 -16.965 -11.134 17.39 1 43.07 ? C25 7VW 401 A 1 HETATM 22 C C26 7VW . . . B 2 -16.36 -11.564 19.75 1 49.58 ? C26 7VW 401 A 1 HETATM 23 C C27 7VW . . . B 2 -20.352 -2.576 15.728 1 49.41 ? C27 7VW 401 A 1 HETATM 24 C C28 7VW . . . B 2 -21.327 -1.935 17.884 1 53 ? C28 7VW 401 A 1 HETATM 25 C C29 7VW . . . B 2 -21.101 -4.323 17.354 1 45.46 ? C29 7VW 401 A 1 HETATM 26 C C3 7VW . . . B 2 -21.448 -12.172 17.03 1 48.92 ? C3 7VW 401 A 1 HETATM 27 C C4 7VW . . . B 2 -21.825 -11.04 17.751 1 62.08 ? C4 7VW 401 A 1 HETATM 28 C C5 7VW . . . B 2 -22.002 -11.113 19.143 1 59.96 ? C5 7VW 401 A 1 HETATM 29 C C6 7VW . . . B 2 -22.044 -9.717 17.029 1 54.02 ? C6 7VW 401 A 1 HETATM 30 C C7 7VW . . . B 2 -19.848 -8.681 17.605 1 49.17 ? C7 7VW 401 A 1 HETATM 31 C C8 7VW . . . B 2 -17.813 -7.502 17.914 1 44.1 ? C8 7VW 401 A 1 HETATM 32 C C9 7VW . . . B 2 -17.566 -6.222 17.156 1 52.75 ? C9 7VW 401 A 1 HETATM 33 N N1 7VW . . . B 2 -18.108 -5.144 17.711 1 56.26 ? N1 7VW 401 A 1 HETATM 34 N N2 7VW . . . B 2 -15.971 -2.833 16.152 1 52.12 ? N2 7VW 401 A 1 HETATM 35 N N3 7VW . . . B 2 -11.878 -5.708 15.305 1 43.42 ? N3 7VW 401 A 1 HETATM 36 O O1 7VW . . . B 2 -20.202 -8.496 18.767 1 56.72 ? O1 7VW 401 A 1 HETATM 37 O O2 7VW . . . B 2 -16.835 -9.34 19.05 1 42.82 ? O2 7VW 401 A 1 HETATM 38 O O3 7VW . . . B 2 -16.92 -6.18 16.117 1 46.05 ? O3 7VW 401 A 1 HETATM 39 O O4 7VW . . . B 2 -16.015 -3.413 18.308 1 54.09 ? O4 7VW 401 A 1 HETATM 40 O O5 7VW . . . B 2 -13.501 -5.22 13.792 1 44.61 ? O5 7VW 401 A 1 HETATM 41 O O6 7VW . . . B 2 -13.642 0.063 15.584 1 39.82 ? O6 7VW 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 41 #