data_7RVR # _model_server_result.job_id nVdmbosqoWgpkyVdmafr7A _model_server_result.datetime_utc '2024-11-16 11:30:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7RVR # _exptl.entry_id 7RVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.672 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(benzyloxy)carbonyl]-3-methyl-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.77 _cell.angle_gamma 90 _cell.entry_id 7RVR _cell.length_a 54.701 _cell.length_b 80.494 _cell.length_c 84.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -54.701 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id 7W5 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 7W5 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.815 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H44 N4 O6' _chem_comp.formula_weight 532.672 _chem_comp.id 7W5 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(benzyloxy)carbonyl]-3-methyl-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C30 7W5 sing 1 n n C1 C6 7W5 doub 2 n y C1 C2 7W5 sing 3 n y C6 C5 7W5 sing 4 n y C2 C3 7W5 doub 5 n y C30 C31 7W5 sing 6 n n C30 C32 7W5 sing 7 n n C30 C11 7W5 sing 8 n n C5 C4 7W5 doub 9 n y O29 C9 7W5 doub 10 n n O38 C15 7W5 doub 11 n n C11 C12 7W5 sing 12 n n C11 N10 7W5 sing 13 n n C3 C4 7W5 sing 14 n y N13 C12 7W5 sing 15 n n N13 C14 7W5 sing 16 n n C4 C7 7W5 sing 17 n n C34 C35 7W5 sing 18 n n C34 C14 7W5 sing 19 n n C37 C35 7W5 sing 20 n n C9 N10 7W5 sing 21 n n C9 O8 7W5 sing 22 n n C36 C35 7W5 sing 23 n n C15 C14 7W5 sing 24 n n C15 N16 7W5 sing 25 n n C12 O33 7W5 doub 26 n n C21 C22 7W5 sing 27 n n C21 C20 7W5 sing 28 n n C35 C13 7W5 sing 29 n n C22 N23 7W5 sing 30 n n O8 C7 7W5 sing 31 n n C17 N16 7W5 sing 32 n n C17 C8 7W5 sing 33 n n C17 C19 7W5 sing 34 n n O9 C8 7W5 sing 35 n n C20 C19 7W5 sing 36 n n C20 C24 7W5 sing 37 n n N23 C24 7W5 sing 38 n n C24 O26 7W5 doub 39 n n C1 H1 7W5 sing 40 n n C10 H2 7W5 sing 41 n n C10 H3 7W5 sing 42 n n C10 H4 7W5 sing 43 n n C11 H5 7W5 sing 44 n n C13 H6 7W5 sing 45 n n C13 H7 7W5 sing 46 n n C13 H8 7W5 sing 47 n n C14 H9 7W5 sing 48 n n C17 H10 7W5 sing 49 n n C19 H11 7W5 sing 50 n n C19 H12 7W5 sing 51 n n C2 H13 7W5 sing 52 n n C20 H14 7W5 sing 53 n n C21 H15 7W5 sing 54 n n C21 H16 7W5 sing 55 n n C22 H17 7W5 sing 56 n n C3 H18 7W5 sing 57 n n C31 H19 7W5 sing 58 n n C31 H20 7W5 sing 59 n n C31 H21 7W5 sing 60 n n C32 H22 7W5 sing 61 n n C32 H23 7W5 sing 62 n n C32 H24 7W5 sing 63 n n C34 H25 7W5 sing 64 n n C34 H26 7W5 sing 65 n n C36 H27 7W5 sing 66 n n C36 H28 7W5 sing 67 n n C36 H29 7W5 sing 68 n n C37 H30 7W5 sing 69 n n C37 H31 7W5 sing 70 n n C37 H32 7W5 sing 71 n n C5 H33 7W5 sing 72 n n C6 H34 7W5 sing 73 n n C7 H35 7W5 sing 74 n n C7 H36 7W5 sing 75 n n C8 H37 7W5 sing 76 n n C8 H38 7W5 sing 77 n n N10 H39 7W5 sing 78 n n N13 H40 7W5 sing 79 n n N16 H41 7W5 sing 80 n n O9 H42 7W5 sing 81 n n C22 H43 7W5 sing 82 n n N23 H44 7W5 sing 83 n n # _atom_sites.entry_id 7RVR _atom_sites.fract_transf_matrix[1][1] 0.018281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002493 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7W5 A 1 401 401 7W5 i30 . C 3 HOH A 1 501 29 HOH HOH . C 3 HOH A 2 502 7 HOH HOH . C 3 HOH A 3 503 2 HOH HOH . C 3 HOH A 4 504 15 HOH HOH . C 3 HOH A 5 505 18 HOH HOH . C 3 HOH A 6 506 14 HOH HOH . C 3 HOH A 7 507 25 HOH HOH . C 3 HOH A 8 508 26 HOH HOH . C 3 HOH A 9 509 6 HOH HOH . C 3 HOH A 10 510 35 HOH HOH . C 3 HOH A 11 511 19 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 28 HOH HOH . C 3 HOH A 14 514 17 HOH HOH . C 3 HOH A 15 515 37 HOH HOH . C 3 HOH A 16 516 5 HOH HOH . C 3 HOH A 17 517 16 HOH HOH . C 3 HOH A 18 518 13 HOH HOH . C 3 HOH A 19 519 31 HOH HOH . C 3 HOH A 20 520 27 HOH HOH . C 3 HOH A 21 521 8 HOH HOH . C 3 HOH A 22 522 3 HOH HOH . C 3 HOH A 23 523 4 HOH HOH . C 3 HOH A 24 524 21 HOH HOH . C 3 HOH A 25 525 9 HOH HOH . C 3 HOH A 26 526 11 HOH HOH . C 3 HOH A 27 527 33 HOH HOH . C 3 HOH A 28 528 24 HOH HOH . C 3 HOH A 29 529 32 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 20 HOH HOH . C 3 HOH A 32 532 23 HOH HOH . C 3 HOH A 33 533 22 HOH HOH . C 3 HOH A 34 534 1 HOH HOH . C 3 HOH A 35 535 34 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7W5 . . . B 2 -5.982 -23.853 -19.781 1 58.15 ? C1 7W5 401 A 1 HETATM 2 C C10 7W5 . . . B 2 -10.949 -18.572 -19.962 1 45.12 ? C10 7W5 401 A 1 HETATM 3 C C11 7W5 . . . B 2 -9.805 -18.151 -17.772 1 50.44 ? C11 7W5 401 A 1 HETATM 4 C C12 7W5 . . . B 2 -10.072 -16.891 -16.983 1 51.32 ? C12 7W5 401 A 1 HETATM 5 C C13 7W5 . . . B 2 -7.376 -13.526 -15.388 1 49.97 ? C13 7W5 401 A 1 HETATM 6 C C14 7W5 . . . B 2 -9.837 -14.506 -16.833 1 47.55 ? C14 7W5 401 A 1 HETATM 7 C C15 7W5 . . . B 2 -11.214 -13.925 -17.009 1 46.03 ? C15 7W5 401 A 1 HETATM 8 C C17 7W5 . . . B 2 -13.172 -12.932 -16.136 1 48.63 ? C17 7W5 401 A 1 HETATM 9 C C19 7W5 . . . B 2 -14.12 -13.691 -15.205 1 38.09 ? C19 7W5 401 A 1 HETATM 10 C C2 7W5 . . . B 2 -6.812 -24.458 -18.855 1 56.68 ? C2 7W5 401 A 1 HETATM 11 C C20 7W5 . . . B 2 -14.208 -15.118 -15.721 1 40.5 ? C20 7W5 401 A 1 HETATM 12 C C21 7W5 . . . B 2 -15.147 -15.234 -16.922 1 45.1 ? C21 7W5 401 A 1 HETATM 13 C C22 7W5 . . . B 2 -16.126 -16.395 -16.647 1 47.41 ? C22 7W5 401 A 1 HETATM 14 C C24 7W5 . . . B 2 -14.785 -16.073 -14.722 1 40.12 ? C24 7W5 401 A 1 HETATM 15 C C3 7W5 . . . B 2 -7.189 -23.756 -17.714 1 60.37 ? C3 7W5 401 A 1 HETATM 16 C C30 7W5 . . . B 2 -11.037 -18.776 -18.456 1 51 ? C30 7W5 401 A 1 HETATM 17 C C31 7W5 . . . B 2 -11.058 -20.276 -18.177 1 52.84 ? C31 7W5 401 A 1 HETATM 18 C C32 7W5 . . . B 2 -12.353 -18.141 -18.019 1 45.91 ? C32 7W5 401 A 1 HETATM 19 C C34 7W5 . . . B 2 -8.793 -13.592 -17.481 1 50.08 ? C34 7W5 401 A 1 HETATM 20 C C35 7W5 . . . B 2 -7.378 -13.698 -16.895 1 53.59 ? C35 7W5 401 A 1 HETATM 21 C C36 7W5 . . . B 2 -6.716 -15.038 -17.203 1 56.48 ? C36 7W5 401 A 1 HETATM 22 C C37 7W5 . . . B 2 -6.537 -12.564 -17.458 1 59.02 ? C37 7W5 401 A 1 HETATM 23 C C4 7W5 . . . B 2 -6.751 -22.459 -17.496 1 58.46 ? C4 7W5 401 A 1 HETATM 24 C C5 7W5 . . . B 2 -5.926 -21.855 -18.439 1 64.47 ? C5 7W5 401 A 1 HETATM 25 C C6 7W5 . . . B 2 -5.545 -22.549 -19.581 1 59.69 ? C6 7W5 401 A 1 HETATM 26 C C7 7W5 . . . B 2 -7.185 -21.724 -16.253 1 56.25 ? C7 7W5 401 A 1 HETATM 27 C C8 7W5 . . . B 2 -13.005 -11.457 -15.76 1 46.96 ? C8 7W5 401 A 1 HETATM 28 C C9 7W5 . . . B 2 -7.862 -19.464 -17.216 1 53.11 ? C9 7W5 401 A 1 HETATM 29 N N10 7W5 . . . B 2 -9.073 -19.043 -16.861 1 49.95 ? N10 7W5 401 A 1 HETATM 30 N N13 7W5 . . . B 2 -9.663 -15.76 -17.538 1 50.22 ? N13 7W5 401 A 1 HETATM 31 N N16 7W5 . . . B 2 -11.834 -13.522 -15.987 1 46.78 ? N16 7W5 401 A 1 HETATM 32 N N23 7W5 . . . B 2 -15.837 -16.686 -15.245 1 38.05 ? N23 7W5 401 A 1 HETATM 33 O O26 7W5 . . . B 2 -14.308 -16.25 -13.614 1 40.89 ? O26 7W5 401 A 1 HETATM 34 O O29 7W5 . . . B 2 -7.411 -19.139 -18.29 1 59.68 ? O29 7W5 401 A 1 HETATM 35 O O33 7W5 . . . B 2 -10.595 -16.913 -15.873 1 46.78 ? O33 7W5 401 A 1 HETATM 36 O O38 7W5 . . . B 2 -11.711 -13.838 -18.112 1 46.5 ? O38 7W5 401 A 1 HETATM 37 O O8 7W5 . . . B 2 -7.018 -20.311 -16.381 1 50.81 ? O8 7W5 401 A 1 HETATM 38 O O9 7W5 . . . B 2 -14.269 -10.792 -15.816 1 46.82 ? O9 7W5 401 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #