data_7RVT # _model_server_result.job_id FpBZIGKuZFrp7ImQaYNdyQ _model_server_result.datetime_utc '2024-11-16 10:59:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7RVT # _exptl.entry_id 7RVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.63 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(2S)-2-{[(benzyloxy)carbonyl]amino}-2-cyclopropylacetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 80.42 _cell.angle_beta 68.42 _cell.angle_gamma 70.59 _cell.entry_id 7RVT _cell.length_a 55.51 _cell.length_b 60.7 _cell.length_c 63.34 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C27 7XK . A 7XK 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C27 7XK . B 7XK 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? # _chem_comp.formula 'C27 H40 N4 O6' _chem_comp.formula_weight 516.63 _chem_comp.id 7XK _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(2S)-2-{[(benzyloxy)carbonyl]amino}-2-cyclopropylacetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 7XK sing 1 n n C23 C35 7XK sing 2 n n C27 C17 7XK sing 3 n n O38 C15 7XK doub 4 n n C34 C35 7XK sing 5 n n C34 C14 7XK sing 6 n n C15 N16 7XK sing 7 n n C15 C14 7XK sing 8 n n C35 C37 7XK sing 9 n n C35 C36 7XK sing 10 n n C17 N16 7XK sing 11 n n C17 C19 7XK sing 12 n n C14 N13 7XK sing 13 n n N13 C12 7XK sing 14 n n C8 C18 7XK sing 15 n n C8 C30 7XK sing 16 n n C19 C20 7XK sing 17 n n C21 C20 7XK sing 18 n n C21 C22 7XK sing 19 n n C12 C11 7XK sing 20 n n C12 O33 7XK doub 21 n n C20 C24 7XK sing 22 n n C18 C30 7XK sing 23 n n C22 N23 7XK sing 24 n n C11 C30 7XK sing 25 n n C11 N10 7XK sing 26 n n O29 C9 7XK doub 27 n n C24 N23 7XK sing 28 n n C24 O26 7XK doub 29 n n N10 C9 7XK sing 30 n n C9 O8 7XK sing 31 n n C3 C2 7XK doub 32 n y C3 C4 7XK sing 33 n y C2 C1 7XK sing 34 n y O8 C7 7XK sing 35 n n C7 C4 7XK sing 36 n n C4 C5 7XK doub 37 n y C1 C6 7XK doub 38 n y C5 C6 7XK sing 39 n y C1 H1 7XK sing 40 n n C11 H2 7XK sing 41 n n C14 H3 7XK sing 42 n n C17 H4 7XK sing 43 n n C18 H5 7XK sing 44 n n C18 H6 7XK sing 45 n n C19 H7 7XK sing 46 n n C19 H8 7XK sing 47 n n C2 H9 7XK sing 48 n n C20 H10 7XK sing 49 n n C21 H11 7XK sing 50 n n C21 H12 7XK sing 51 n n C22 H13 7XK sing 52 n n C22 H14 7XK sing 53 n n C23 H15 7XK sing 54 n n C23 H16 7XK sing 55 n n C23 H17 7XK sing 56 n n C27 H18 7XK sing 57 n n C27 H19 7XK sing 58 n n C3 H20 7XK sing 59 n n C30 H21 7XK sing 60 n n C34 H22 7XK sing 61 n n C34 H23 7XK sing 62 n n C36 H24 7XK sing 63 n n C36 H25 7XK sing 64 n n C36 H26 7XK sing 65 n n C37 H27 7XK sing 66 n n C37 H28 7XK sing 67 n n C37 H29 7XK sing 68 n n C5 H30 7XK sing 69 n n C6 H31 7XK sing 70 n n C7 H32 7XK sing 71 n n C7 H33 7XK sing 72 n n C8 H34 7XK sing 73 n n C8 H35 7XK sing 74 n n N10 H36 7XK sing 75 n n N13 H37 7XK sing 76 n n N16 H38 7XK sing 77 n n N23 H39 7XK sing 78 n n O28 H40 7XK sing 79 n n # _atom_sites.entry_id 7RVT _atom_sites.fract_transf_matrix[1][1] 0.018015 _atom_sites.fract_transf_matrix[1][2] -0.006348 _atom_sites.fract_transf_matrix[1][3] -0.006814 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017467 _atom_sites.fract_transf_matrix[2][3] -0.000881 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7XK A 1 401 401 7XK i31 . D 2 7XK B 1 401 401 7XK i31 . E 3 HOH A 1 501 5 HOH HOH . E 3 HOH A 2 502 111 HOH HOH . E 3 HOH A 3 503 113 HOH HOH . E 3 HOH A 4 504 10 HOH HOH . E 3 HOH A 5 505 15 HOH HOH . E 3 HOH A 6 506 99 HOH HOH . E 3 HOH A 7 507 133 HOH HOH . E 3 HOH A 8 508 47 HOH HOH . E 3 HOH A 9 509 76 HOH HOH . E 3 HOH A 10 510 33 HOH HOH . E 3 HOH A 11 511 23 HOH HOH . E 3 HOH A 12 512 84 HOH HOH . E 3 HOH A 13 513 44 HOH HOH . E 3 HOH A 14 514 51 HOH HOH . E 3 HOH A 15 515 103 HOH HOH . E 3 HOH A 16 516 48 HOH HOH . E 3 HOH A 17 517 24 HOH HOH . E 3 HOH A 18 518 9 HOH HOH . E 3 HOH A 19 519 141 HOH HOH . E 3 HOH A 20 520 26 HOH HOH . E 3 HOH A 21 521 56 HOH HOH . E 3 HOH A 22 522 12 HOH HOH . E 3 HOH A 23 523 49 HOH HOH . E 3 HOH A 24 524 144 HOH HOH . E 3 HOH A 25 525 135 HOH HOH . E 3 HOH A 26 526 50 HOH HOH . E 3 HOH A 27 527 38 HOH HOH . E 3 HOH A 28 528 124 HOH HOH . E 3 HOH A 29 529 3 HOH HOH . E 3 HOH A 30 530 34 HOH HOH . E 3 HOH A 31 531 109 HOH HOH . E 3 HOH A 32 532 46 HOH HOH . E 3 HOH A 33 533 83 HOH HOH . E 3 HOH A 34 534 20 HOH HOH . E 3 HOH A 35 535 35 HOH HOH . E 3 HOH A 36 536 4 HOH HOH . E 3 HOH A 37 537 25 HOH HOH . E 3 HOH A 38 538 54 HOH HOH . E 3 HOH A 39 539 14 HOH HOH . E 3 HOH A 40 540 74 HOH HOH . E 3 HOH A 41 541 16 HOH HOH . E 3 HOH A 42 542 107 HOH HOH . E 3 HOH A 43 543 97 HOH HOH . E 3 HOH A 44 544 13 HOH HOH . E 3 HOH A 45 545 138 HOH HOH . E 3 HOH A 46 546 30 HOH HOH . E 3 HOH A 47 547 105 HOH HOH . E 3 HOH A 48 548 75 HOH HOH . E 3 HOH A 49 549 59 HOH HOH . E 3 HOH A 50 550 27 HOH HOH . E 3 HOH A 51 551 6 HOH HOH . E 3 HOH A 52 552 119 HOH HOH . E 3 HOH A 53 553 69 HOH HOH . E 3 HOH A 54 554 52 HOH HOH . E 3 HOH A 55 555 53 HOH HOH . E 3 HOH A 56 556 45 HOH HOH . E 3 HOH A 57 557 90 HOH HOH . E 3 HOH A 58 558 22 HOH HOH . E 3 HOH A 59 559 70 HOH HOH . E 3 HOH A 60 560 110 HOH HOH . E 3 HOH A 61 561 118 HOH HOH . E 3 HOH A 62 562 65 HOH HOH . E 3 HOH A 63 563 37 HOH HOH . E 3 HOH A 64 564 58 HOH HOH . E 3 HOH A 65 565 63 HOH HOH . E 3 HOH A 66 566 93 HOH HOH . E 3 HOH A 67 567 98 HOH HOH . E 3 HOH A 68 568 60 HOH HOH . E 3 HOH A 69 569 95 HOH HOH . E 3 HOH A 70 570 115 HOH HOH . E 3 HOH A 71 571 19 HOH HOH . E 3 HOH A 72 572 139 HOH HOH . E 3 HOH A 73 573 104 HOH HOH . E 3 HOH A 74 574 114 HOH HOH . E 3 HOH A 75 575 77 HOH HOH . E 3 HOH A 76 576 134 HOH HOH . E 3 HOH A 77 577 80 HOH HOH . F 3 HOH B 1 501 126 HOH HOH . F 3 HOH B 2 502 112 HOH HOH . F 3 HOH B 3 503 116 HOH HOH . F 3 HOH B 4 504 41 HOH HOH . F 3 HOH B 5 505 140 HOH HOH . F 3 HOH B 6 506 132 HOH HOH . F 3 HOH B 7 507 102 HOH HOH . F 3 HOH B 8 508 43 HOH HOH . F 3 HOH B 9 509 92 HOH HOH . F 3 HOH B 10 510 8 HOH HOH . F 3 HOH B 11 511 117 HOH HOH . F 3 HOH B 12 512 67 HOH HOH . F 3 HOH B 13 513 87 HOH HOH . F 3 HOH B 14 514 136 HOH HOH . F 3 HOH B 15 515 42 HOH HOH . F 3 HOH B 16 516 1 HOH HOH . F 3 HOH B 17 517 40 HOH HOH . F 3 HOH B 18 518 122 HOH HOH . F 3 HOH B 19 519 2 HOH HOH . F 3 HOH B 20 520 21 HOH HOH . F 3 HOH B 21 521 32 HOH HOH . F 3 HOH B 22 522 143 HOH HOH . F 3 HOH B 23 523 66 HOH HOH . F 3 HOH B 24 524 106 HOH HOH . F 3 HOH B 25 525 123 HOH HOH . F 3 HOH B 26 526 88 HOH HOH . F 3 HOH B 27 527 78 HOH HOH . F 3 HOH B 28 528 142 HOH HOH . F 3 HOH B 29 529 137 HOH HOH . F 3 HOH B 30 530 64 HOH HOH . F 3 HOH B 31 531 7 HOH HOH . F 3 HOH B 32 532 81 HOH HOH . F 3 HOH B 33 533 55 HOH HOH . F 3 HOH B 34 534 29 HOH HOH . F 3 HOH B 35 535 28 HOH HOH . F 3 HOH B 36 536 82 HOH HOH . F 3 HOH B 37 537 31 HOH HOH . F 3 HOH B 38 538 108 HOH HOH . F 3 HOH B 39 539 129 HOH HOH . F 3 HOH B 40 540 85 HOH HOH . F 3 HOH B 41 541 57 HOH HOH . F 3 HOH B 42 542 127 HOH HOH . F 3 HOH B 43 543 91 HOH HOH . F 3 HOH B 44 544 36 HOH HOH . F 3 HOH B 45 545 96 HOH HOH . F 3 HOH B 46 546 73 HOH HOH . F 3 HOH B 47 547 125 HOH HOH . F 3 HOH B 48 548 100 HOH HOH . F 3 HOH B 49 549 79 HOH HOH . F 3 HOH B 50 550 86 HOH HOH . F 3 HOH B 51 551 39 HOH HOH . F 3 HOH B 52 552 11 HOH HOH . F 3 HOH B 53 553 18 HOH HOH . F 3 HOH B 54 554 89 HOH HOH . F 3 HOH B 55 555 130 HOH HOH . F 3 HOH B 56 556 120 HOH HOH . F 3 HOH B 57 557 71 HOH HOH . F 3 HOH B 58 558 62 HOH HOH . F 3 HOH B 59 559 72 HOH HOH . F 3 HOH B 60 560 68 HOH HOH . F 3 HOH B 61 561 61 HOH HOH . F 3 HOH B 62 562 94 HOH HOH . F 3 HOH B 63 563 17 HOH HOH . F 3 HOH B 64 564 101 HOH HOH . F 3 HOH B 65 565 121 HOH HOH . F 3 HOH B 66 566 131 HOH HOH . F 3 HOH B 67 567 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7XK . . . C 2 6.766 -0.576 33.193 1 41.14 ? C1 7XK 401 A 1 HETATM 2 C C11 7XK . . . C 2 9.929 1.976 27.685 1 26.36 ? C11 7XK 401 A 1 HETATM 3 C C12 7XK . . . C 2 10.22 2.391 26.274 1 27.74 ? C12 7XK 401 A 1 HETATM 4 C C14 7XK . . . C 2 9.741 3.944 24.457 1 25.92 ? C14 7XK 401 A 1 HETATM 5 C C15 7XK . . . C 2 11.088 4.505 24.083 1 26.52 ? C15 7XK 401 A 1 HETATM 6 C C17 7XK . . . C 2 13.075 4.37 22.626 1 27.2 ? C17 7XK 401 A 1 HETATM 7 C C18 7XK . . . C 2 12.281 2.808 28.224 1 27.85 ? C18 7XK 401 A 1 HETATM 8 C C19 7XK . . . C 2 14.011 3.157 22.733 1 22.35 ? C19 7XK 401 A 1 HETATM 9 C C2 7XK . . . C 2 6.414 0.485 32.365 1 40.56 ? C2 7XK 401 A 1 HETATM 10 C C20 7XK . . . C 2 14.073 2.534 24.111 1 23.69 ? C20 7XK 401 A 1 HETATM 11 C C21 7XK . . . C 2 14.874 3.417 25.055 1 26.11 ? C21 7XK 401 A 1 HETATM 12 C C22 7XK . . . C 2 16.001 2.524 25.598 1 26.94 ? C22 7XK 401 A 1 HETATM 13 C C23 7XK . . . C 2 6.284 5.617 23.679 1 25.83 ? C23 7XK 401 A 1 HETATM 14 C C24 7XK . . . C 2 14.904 1.291 23.988 1 25.39 ? C24 7XK 401 A 1 HETATM 15 C C27 7XK . . . C 2 13.203 4.961 21.202 1 26.1 ? C27 7XK 401 A 1 HETATM 16 C C3 7XK . . . C 2 6.3 0.285 30.992 1 41.37 ? C3 7XK 401 A 1 HETATM 17 C C30 7XK . . . C 2 11.178 1.797 28.529 1 27.37 ? C30 7XK 401 A 1 HETATM 18 C C34 7XK . . . C 2 8.66 4.995 24.188 1 24.12 ? C34 7XK 401 A 1 HETATM 19 C C35 7XK . . . C 2 7.253 4.457 23.897 1 25.75 ? C35 7XK 401 A 1 HETATM 20 C C36 7XK . . . C 2 7.272 3.65 22.616 1 22.78 ? C36 7XK 401 A 1 HETATM 21 C C37 7XK . . . C 2 6.695 3.614 25.044 1 31.08 ? C37 7XK 401 A 1 HETATM 22 C C4 7XK . . . C 2 6.558 -0.97 30.433 1 38.67 ? C4 7XK 401 A 1 HETATM 23 C C5 7XK . . . C 2 6.895 -2.034 31.262 1 39.81 ? C5 7XK 401 A 1 HETATM 24 C C6 7XK . . . C 2 7.004 -1.834 32.642 1 44.48 ? C6 7XK 401 A 1 HETATM 25 C C7 7XK . . . C 2 6.409 -1.2 28.943 1 36.51 ? C7 7XK 401 A 1 HETATM 26 C C8 7XK . . . C 2 11.363 3.012 29.424 1 35.35 ? C8 7XK 401 A 1 HETATM 27 C C9 7XK . . . C 2 7.998 0.582 28.06 1 31.9 ? C9 7XK 401 A 1 HETATM 28 N N10 7XK . . . C 2 9.259 0.706 27.694 1 27.9 ? N10 7XK 401 A 1 HETATM 29 N N13 7XK . . . C 2 9.682 3.54 25.859 1 28.18 ? N13 7XK 401 A 1 HETATM 30 N N16 7XK . . . C 2 11.703 4.018 22.981 1 21.36 ? N16 7XK 401 A 1 HETATM 31 N N23 7XK . . . C 2 15.913 1.286 24.847 1 25.43 ? N23 7XK 401 A 1 HETATM 32 O O26 7XK . . . C 2 14.683 0.424 23.159 1 22.48 ? O26 7XK 401 A 1 HETATM 33 O O28 7XK . . . C 2 14.446 5.698 21.128 1 25.37 ? O28 7XK 401 A 1 HETATM 34 O O29 7XK . . . C 2 7.276 1.537 28.326 1 38.92 ? O29 7XK 401 A 1 HETATM 35 O O33 7XK . . . C 2 10.934 1.706 25.547 1 25.72 ? O33 7XK 401 A 1 HETATM 36 O O38 7XK . . . C 2 11.561 5.39 24.783 1 24.43 ? O38 7XK 401 A 1 HETATM 37 O O8 7XK . . . C 2 7.508 -0.779 28.13 1 36.13 ? O8 7XK 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #