data_7RVU # _model_server_result.job_id fi6rqzzFIwz1g2Il7wzTxg _model_server_result.datetime_utc '2024-11-28 22:15:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7RVU # _exptl.entry_id 7RVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.672 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(benzyloxy)carbonyl]-3-methyl-L-isovalyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.93 _cell.angle_gamma 90 _cell.entry_id 7RVU _cell.length_a 55.6 _cell.length_b 78.986 _cell.length_c 85.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C27 _struct_conn.ptnr2_label_comp_id 7XT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 7XT _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.83 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H44 N4 O6' _chem_comp.formula_weight 532.672 _chem_comp.id 7XT _chem_comp.mon_nstd_flag . _chem_comp.name N-[(benzyloxy)carbonyl]-3-methyl-L-isovalyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 7XT doub 1 n y C6 C5 7XT sing 2 n y C1 C2 7XT sing 3 n y C30 C11 7XT sing 4 n n C5 C4 7XT doub 5 n y C13 C10 7XT sing 6 n n C10 C11 7XT sing 7 n n C10 C16 7XT sing 8 n n C2 C3 7XT doub 9 n y O38 C15 7XT doub 10 n n C11 N10 7XT sing 11 n n C11 C12 7XT sing 12 n n N13 C12 7XT sing 13 n n N13 C14 7XT sing 14 n n C4 C3 7XT sing 15 n y C4 C7 7XT sing 16 n n N10 C9 7XT sing 17 n n C36 C35 7XT sing 18 n n C34 C14 7XT sing 19 n n C34 C35 7XT sing 20 n n C37 C35 7XT sing 21 n n C12 O33 7XT doub 22 n n C9 O8 7XT sing 23 n n C9 O29 7XT doub 24 n n C15 C14 7XT sing 25 n n C15 N16 7XT sing 26 n n O8 C7 7XT sing 27 n n C35 C23 7XT sing 28 n n C21 C22 7XT sing 29 n n C21 C20 7XT sing 30 n n C22 N23 7XT sing 31 n n C17 N16 7XT sing 32 n n C17 C27 7XT sing 33 n n C17 C19 7XT sing 34 n n C27 O28 7XT sing 35 n n C20 C19 7XT sing 36 n n C20 C24 7XT sing 37 n n N23 C24 7XT sing 38 n n C24 O26 7XT doub 39 n n C1 H1 7XT sing 40 n n C10 H2 7XT sing 41 n n C13 H3 7XT sing 42 n n C13 H4 7XT sing 43 n n C13 H5 7XT sing 44 n n C14 H6 7XT sing 45 n n C16 H7 7XT sing 46 n n C16 H8 7XT sing 47 n n C16 H9 7XT sing 48 n n C17 H10 7XT sing 49 n n C19 H11 7XT sing 50 n n C19 H12 7XT sing 51 n n C2 H13 7XT sing 52 n n C20 H14 7XT sing 53 n n C21 H15 7XT sing 54 n n C21 H16 7XT sing 55 n n C22 H17 7XT sing 56 n n C23 H18 7XT sing 57 n n C23 H19 7XT sing 58 n n C23 H20 7XT sing 59 n n C27 H21 7XT sing 60 n n C27 H22 7XT sing 61 n n C3 H23 7XT sing 62 n n C30 H24 7XT sing 63 n n C30 H25 7XT sing 64 n n C30 H26 7XT sing 65 n n C34 H27 7XT sing 66 n n C34 H28 7XT sing 67 n n C36 H29 7XT sing 68 n n C36 H30 7XT sing 69 n n C36 H31 7XT sing 70 n n C37 H32 7XT sing 71 n n C37 H33 7XT sing 72 n n C37 H34 7XT sing 73 n n C5 H35 7XT sing 74 n n C6 H36 7XT sing 75 n n C7 H37 7XT sing 76 n n C7 H38 7XT sing 77 n n N10 H39 7XT sing 78 n n N13 H40 7XT sing 79 n n N16 H41 7XT sing 80 n n O28 H42 7XT sing 81 n n C22 H43 7XT sing 82 n n N23 H44 7XT sing 83 n n # _atom_sites.entry_id 7RVU _atom_sites.fract_transf_matrix[1][1] 0.017986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002505 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7XT A 1 401 401 7XT i35 . C 3 HOH A 1 501 37 HOH HOH . C 3 HOH A 2 502 1 HOH HOH . C 3 HOH A 3 503 39 HOH HOH . C 3 HOH A 4 504 14 HOH HOH . C 3 HOH A 5 505 7 HOH HOH . C 3 HOH A 6 506 30 HOH HOH . C 3 HOH A 7 507 41 HOH HOH . C 3 HOH A 8 508 43 HOH HOH . C 3 HOH A 9 509 27 HOH HOH . C 3 HOH A 10 510 23 HOH HOH . C 3 HOH A 11 511 38 HOH HOH . C 3 HOH A 12 512 32 HOH HOH . C 3 HOH A 13 513 40 HOH HOH . C 3 HOH A 14 514 4 HOH HOH . C 3 HOH A 15 515 33 HOH HOH . C 3 HOH A 16 516 9 HOH HOH . C 3 HOH A 17 517 13 HOH HOH . C 3 HOH A 18 518 21 HOH HOH . C 3 HOH A 19 519 28 HOH HOH . C 3 HOH A 20 520 19 HOH HOH . C 3 HOH A 21 521 18 HOH HOH . C 3 HOH A 22 522 26 HOH HOH . C 3 HOH A 23 523 34 HOH HOH . C 3 HOH A 24 524 11 HOH HOH . C 3 HOH A 25 525 17 HOH HOH . C 3 HOH A 26 526 12 HOH HOH . C 3 HOH A 27 527 8 HOH HOH . C 3 HOH A 28 528 2 HOH HOH . C 3 HOH A 29 529 31 HOH HOH . C 3 HOH A 30 530 35 HOH HOH . C 3 HOH A 31 531 10 HOH HOH . C 3 HOH A 32 532 15 HOH HOH . C 3 HOH A 33 533 20 HOH HOH . C 3 HOH A 34 534 36 HOH HOH . C 3 HOH A 35 535 16 HOH HOH . C 3 HOH A 36 536 3 HOH HOH . C 3 HOH A 37 537 42 HOH HOH . C 3 HOH A 38 538 25 HOH HOH . C 3 HOH A 39 539 6 HOH HOH . C 3 HOH A 40 540 22 HOH HOH . C 3 HOH A 41 541 24 HOH HOH . C 3 HOH A 42 542 5 HOH HOH . C 3 HOH A 43 543 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7XT . . . B 2 21.578 -23.483 -19.44 1 36.35 ? C1 7XT 401 A 1 HETATM 2 C C10 7XT . . . B 2 16.186 -18.47 -18.464 1 28.17 ? C10 7XT 401 A 1 HETATM 3 C C11 7XT . . . B 2 17.479 -17.784 -17.992 1 26.41 ? C11 7XT 401 A 1 HETATM 4 C C12 7XT . . . B 2 17.246 -16.551 -17.122 1 22.7 ? C12 7XT 401 A 1 HETATM 5 C C13 7XT . . . B 2 15.023 -17.487 -18.636 1 25.01 ? C13 7XT 401 A 1 HETATM 6 C C14 7XT . . . B 2 17.778 -14.175 -16.782 1 18.44 ? C14 7XT 401 A 1 HETATM 7 C C15 7XT . . . B 2 16.465 -13.492 -16.97 1 18.38 ? C15 7XT 401 A 1 HETATM 8 C C16 7XT . . . B 2 15.815 -19.701 -17.639 1 26.14 ? C16 7XT 401 A 1 HETATM 9 C C17 7XT . . . B 2 14.536 -12.342 -16.078 1 20.72 ? C17 7XT 401 A 1 HETATM 10 C C19 7XT . . . B 2 13.545 -13.084 -15.169 1 18.03 ? C19 7XT 401 A 1 HETATM 11 C C2 7XT . . . B 2 21.341 -23.952 -18.152 1 37.64 ? C2 7XT 401 A 1 HETATM 12 C C20 7XT . . . B 2 13.59 -14.585 -15.333 1 15.88 ? C20 7XT 401 A 1 HETATM 13 C C21 7XT . . . B 2 12.792 -14.944 -16.585 1 16.44 ? C21 7XT 401 A 1 HETATM 14 C C22 7XT . . . B 2 11.789 -15.992 -16.102 1 16.33 ? C22 7XT 401 A 1 HETATM 15 C C23 7XT . . . B 2 20.343 -13.408 -15.204 1 21.89 ? C23 7XT 401 A 1 HETATM 16 C C24 7XT . . . B 2 12.875 -15.232 -14.178 1 17.34 ? C24 7XT 401 A 1 HETATM 17 C C27 7XT . . . B 2 14.442 -10.898 -15.633 1 18.95 ? C27 7XT 401 A 1 HETATM 18 C C3 7XT . . . B 2 21.069 -23.071 -17.112 1 35.04 ? C3 7XT 401 A 1 HETATM 19 C C30 7XT . . . B 2 18.106 -17.298 -19.29 1 30.48 ? C30 7XT 401 A 1 HETATM 20 C C34 7XT . . . B 2 18.867 -13.206 -17.245 1 20.98 ? C34 7XT 401 A 1 HETATM 21 C C35 7XT . . . B 2 20.294 -13.401 -16.72 1 22.03 ? C35 7XT 401 A 1 HETATM 22 C C36 7XT . . . B 2 20.896 -14.683 -17.257 1 23.19 ? C36 7XT 401 A 1 HETATM 23 C C37 7XT . . . B 2 21.194 -12.259 -17.191 1 25.08 ? C37 7XT 401 A 1 HETATM 24 C C4 7XT . . . B 2 21.036 -21.717 -17.373 1 34.48 ? C4 7XT 401 A 1 HETATM 25 C C5 7XT . . . B 2 21.275 -21.255 -18.662 1 37.22 ? C5 7XT 401 A 1 HETATM 26 C C6 7XT . . . B 2 21.549 -22.123 -19.707 1 32.73 ? C6 7XT 401 A 1 HETATM 27 C C7 7XT . . . B 2 20.726 -20.719 -16.285 1 36.34 ? C7 7XT 401 A 1 HETATM 28 C C9 7XT . . . B 2 19.62 -18.481 -17.067 1 33.07 ? C9 7XT 401 A 1 HETATM 29 N N10 7XT . . . B 2 18.346 -18.773 -17.36 1 26.55 ? N10 7XT 401 A 1 HETATM 30 N N13 7XT . . . B 2 17.732 -15.384 -17.589 1 22.33 ? N13 7XT 401 A 1 HETATM 31 N N16 7XT . . . B 2 15.903 -12.844 -15.959 1 17.07 ? N16 7XT 401 A 1 HETATM 32 N N23 7XT . . . B 2 11.963 -16.074 -14.657 1 16.41 ? N23 7XT 401 A 1 HETATM 33 O O26 7XT . . . B 2 13.095 -14.992 -12.979 1 18.61 ? O26 7XT 401 A 1 HETATM 34 O O28 7XT . . . B 2 13.024 -10.64 -15.593 1 17.76 ? O28 7XT 401 A 1 HETATM 35 O O29 7XT . . . B 2 19.989 -17.346 -16.912 1 32.37 ? O29 7XT 401 A 1 HETATM 36 O O33 7XT . . . B 2 16.658 -16.621 -16.054 1 19.41 ? O33 7XT 401 A 1 HETATM 37 O O38 7XT . . . B 2 15.946 -13.528 -18.063 1 22.95 ? O38 7XT 401 A 1 HETATM 38 O O8 7XT . . . B 2 20.709 -19.457 -16.96 1 42.48 ? O8 7XT 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #