data_7RVV # _model_server_result.job_id ja9n5FHkRE24MXJRwgwO7g _model_server_result.datetime_utc '2024-11-16 11:46:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7RVV # _exptl.entry_id 7RVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.619 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(benzyloxy)carbonyl]-2-methyl-L-alanyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 108.82 _cell.angle_beta 97.36 _cell.angle_gamma 98.14 _cell.entry_id 7RVV _cell.length_a 46.46 _cell.length_b 52.264 _cell.length_c 64.118 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C27 _struct_conn.ptnr2_label_comp_id 7Y2 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 7Y2 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.816 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H40 N4 O6' _chem_comp.formula_weight 504.619 _chem_comp.id 7Y2 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(benzyloxy)carbonyl]-2-methyl-L-alanyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 7Y2 doub 1 n y C2 C1 7Y2 sing 2 n y C3 C4 7Y2 sing 3 n y C1 C6 7Y2 doub 4 n y C4 C7 7Y2 sing 5 n n C4 C5 7Y2 doub 6 n y C6 C5 7Y2 sing 7 n y C7 O8 7Y2 sing 8 n n N23 C24 7Y2 sing 9 n n N23 C22 7Y2 sing 10 n n O26 C24 7Y2 doub 11 n n O8 C9 7Y2 sing 12 n n C24 C20 7Y2 sing 13 n n N10 C9 7Y2 sing 14 n n N10 C11 7Y2 sing 15 n n C9 O29 7Y2 doub 16 n n C10 C11 7Y2 sing 17 n n C22 C21 7Y2 sing 18 n n O33 C12 7Y2 doub 19 n n C11 C12 7Y2 sing 20 n n C11 C30 7Y2 sing 21 n n C20 C21 7Y2 sing 22 n n C20 C19 7Y2 sing 23 n n C12 N13 7Y2 sing 24 n n C23 C35 7Y2 sing 25 n n C19 C17 7Y2 sing 26 n n N13 C14 7Y2 sing 27 n n N16 C17 7Y2 sing 28 n n N16 C15 7Y2 sing 29 n n C14 C15 7Y2 sing 30 n n C14 C34 7Y2 sing 31 n n C36 C35 7Y2 sing 32 n n C35 C34 7Y2 sing 33 n n C35 C37 7Y2 sing 34 n n C17 C27 7Y2 sing 35 n n C15 O38 7Y2 doub 36 n n C27 O28 7Y2 sing 37 n n C1 H1 7Y2 sing 38 n n C10 H2 7Y2 sing 39 n n C10 H3 7Y2 sing 40 n n C10 H4 7Y2 sing 41 n n C14 H5 7Y2 sing 42 n n C17 H6 7Y2 sing 43 n n C19 H7 7Y2 sing 44 n n C19 H8 7Y2 sing 45 n n C2 H9 7Y2 sing 46 n n C20 H10 7Y2 sing 47 n n C21 H11 7Y2 sing 48 n n C21 H12 7Y2 sing 49 n n C22 H13 7Y2 sing 50 n n C22 H14 7Y2 sing 51 n n C23 H15 7Y2 sing 52 n n C23 H16 7Y2 sing 53 n n C23 H17 7Y2 sing 54 n n C27 H18 7Y2 sing 55 n n C27 H19 7Y2 sing 56 n n C3 H20 7Y2 sing 57 n n C30 H21 7Y2 sing 58 n n C30 H22 7Y2 sing 59 n n C30 H23 7Y2 sing 60 n n C34 H24 7Y2 sing 61 n n C34 H25 7Y2 sing 62 n n C36 H26 7Y2 sing 63 n n C36 H27 7Y2 sing 64 n n C36 H28 7Y2 sing 65 n n C37 H29 7Y2 sing 66 n n C37 H30 7Y2 sing 67 n n C37 H31 7Y2 sing 68 n n C5 H32 7Y2 sing 69 n n C6 H33 7Y2 sing 70 n n C7 H34 7Y2 sing 71 n n C7 H35 7Y2 sing 72 n n N10 H36 7Y2 sing 73 n n N13 H37 7Y2 sing 74 n n N16 H38 7Y2 sing 75 n n N23 H39 7Y2 sing 76 n n O28 H40 7Y2 sing 77 n n # _atom_sites.entry_id 7RVV _atom_sites.fract_transf_matrix[1][1] 0.021524 _atom_sites.fract_transf_matrix[1][2] 0.00308 _atom_sites.fract_transf_matrix[1][3] 0.004104 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019329 _atom_sites.fract_transf_matrix[2][3] 0.007153 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 7Y2 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id 7Y2 _pdbx_nonpoly_scheme.auth_mon_id i35 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7Y2 . . . B 2 -30.61 18.032 -7.099 1 33.13 ? C1 7Y2 401 A 1 HETATM 2 C C10 7Y2 . . . B 2 -24.686 12.597 -3.81 1 17.76 ? C10 7Y2 401 A 1 HETATM 3 C C11 7Y2 . . . B 2 -24.778 13.947 -3.118 1 20.4 ? C11 7Y2 401 A 1 HETATM 4 C C12 7Y2 . . . B 2 -23.37 14.348 -2.737 1 19.52 ? C12 7Y2 401 A 1 HETATM 5 C C14 7Y2 . . . B 2 -21.912 15.175 -0.962 1 19.14 ? C14 7Y2 401 A 1 HETATM 6 C C15 7Y2 . . . B 2 -21.365 13.953 -0.291 1 17.34 ? C15 7Y2 401 A 1 HETATM 7 C C17 7Y2 . . . B 2 -19.616 12.21 -0.471 1 18.83 ? C17 7Y2 401 A 1 HETATM 8 C C19 7Y2 . . . B 2 -18.895 11.499 -1.629 1 21.71 ? C19 7Y2 401 A 1 HETATM 9 C C2 7Y2 . . . B 2 -29.542 18.481 -7.878 1 37.64 ? C2 7Y2 401 A 1 HETATM 10 C C20 7Y2 . . . B 2 -19.891 11.194 -2.766 1 24.98 ? C20 7Y2 401 A 1 HETATM 11 C C21 7Y2 . . . B 2 -20.716 9.939 -2.451 1 20.9 ? C21 7Y2 401 A 1 HETATM 12 C C22 7Y2 . . . B 2 -20.884 9.235 -3.789 1 19.48 ? C22 7Y2 401 A 1 HETATM 13 C C23 7Y2 . . . B 2 -21.959 17.878 -1.932 1 25 ? C23 7Y2 401 A 1 HETATM 14 C C24 7Y2 . . . B 2 -19.333 10.919 -4.144 1 20.22 ? C24 7Y2 401 A 1 HETATM 15 C C27 7Y2 . . . B 2 -18.622 12.838 0.506 1 20.62 ? C27 7Y2 401 A 1 HETATM 16 C C3 7Y2 . . . B 2 -28.219 18.251 -7.49 1 30.16 ? C3 7Y2 401 A 1 HETATM 17 C C30 7Y2 . . . B 2 -25.653 13.843 -1.864 1 19.06 ? C30 7Y2 401 A 1 HETATM 18 C C34 7Y2 . . . B 2 -22.009 16.344 0.042 1 17.29 ? C34 7Y2 401 A 1 HETATM 19 C C35 7Y2 . . . B 2 -22.494 17.687 -0.535 1 15.26 ? C35 7Y2 401 A 1 HETATM 20 C C36 7Y2 . . . B 2 -24.008 17.797 -0.563 1 18.34 ? C36 7Y2 401 A 1 HETATM 21 C C37 7Y2 . . . B 2 -21.96 18.868 0.25 1 14.81 ? C37 7Y2 401 A 1 HETATM 22 C C4 7Y2 . . . B 2 -27.959 17.57 -6.31 1 25.23 ? C4 7Y2 401 A 1 HETATM 23 C C5 7Y2 . . . B 2 -29.022 17.115 -5.535 1 28.31 ? C5 7Y2 401 A 1 HETATM 24 C C6 7Y2 . . . B 2 -30.343 17.345 -5.919 1 28.57 ? C6 7Y2 401 A 1 HETATM 25 C C7 7Y2 . . . B 2 -26.534 17.317 -5.886 1 24.85 ? C7 7Y2 401 A 1 HETATM 26 C C9 7Y2 . . . B 2 -25.344 16.207 -3.973 1 22.23 ? C9 7Y2 401 A 1 HETATM 27 N N10 7Y2 . . . B 2 -25.419 14.871 -4.037 1 21.08 ? N10 7Y2 401 A 1 HETATM 28 N N13 7Y2 . . . B 2 -23.203 14.843 -1.523 1 21.07 ? N13 7Y2 401 A 1 HETATM 29 N N16 7Y2 . . . B 2 -20.507 13.232 -1.009 1 18.6 ? N16 7Y2 401 A 1 HETATM 30 N N23 7Y2 . . . B 2 -20.115 10.029 -4.736 1 22.39 ? N23 7Y2 401 A 1 HETATM 31 O O26 7Y2 . . . B 2 -18.315 11.406 -4.625 1 19.17 ? O26 7Y2 401 A 1 HETATM 32 O O28 7Y2 . . . B 2 -18.217 11.936 1.554 1 24.1 ? O28 7Y2 401 A 1 HETATM 33 O O29 7Y2 . . . B 2 -24.382 16.822 -3.535 1 21.48 ? O29 7Y2 401 A 1 HETATM 34 O O33 7Y2 . . . B 2 -22.451 14.238 -3.509 1 19.91 ? O33 7Y2 401 A 1 HETATM 35 O O38 7Y2 . . . B 2 -21.726 13.674 0.838 1 17.59 ? O38 7Y2 401 A 1 HETATM 36 O O8 7Y2 . . . B 2 -26.468 16.979 -4.499 1 21.52 ? O8 7Y2 401 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #