data_7RW1 # _model_server_result.job_id fKpXXFovC6_C2PUqSBsF6g _model_server_result.datetime_utc '2024-11-16 10:30:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7RW1 # _exptl.entry_id 7RW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.629 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1H-indole-2-carbonyl)-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 79.27 _cell.angle_beta 68.06 _cell.angle_gamma 69.37 _cell.entry_id 7RW1 _cell.length_a 55.64 _cell.length_b 61.09 _cell.length_c 63.87 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C8 800 . A 800 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C8 800 . B 800 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? # _chem_comp.formula 'C27 H39 N5 O5' _chem_comp.formula_weight 513.629 _chem_comp.id 800 _chem_comp.mon_nstd_flag . _chem_comp.name N-(1H-indole-2-carbonyl)-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C8 800 sing 1 n n C8 C17 800 sing 2 n n C17 C19 800 sing 3 n n C17 N16 800 sing 4 n n C19 C20 800 sing 5 n n N16 C15 800 sing 6 n n O26 C24 800 doub 7 n n C35 C36 800 sing 8 n n C35 C37 800 sing 9 n n C35 C34 800 sing 10 n n C24 C20 800 sing 11 n n C24 N23 800 sing 12 n n C20 C21 800 sing 13 n n C15 C14 800 sing 14 n n C15 O38 800 doub 15 n n C34 C14 800 sing 16 n n C14 N13 800 sing 17 n n N23 C22 800 sing 18 n n C21 C22 800 sing 19 n n O33 C12 800 doub 20 n n N13 C12 800 sing 21 n n C12 C11 800 sing 22 n n C11 C30 800 sing 23 n n C11 N10 800 sing 24 n n C16 C3 800 doub 25 n y C16 C13 800 sing 26 n y N2 C3 800 sing 27 n y N2 C1 800 sing 28 n y C30 C32 800 sing 29 n n C30 C10 800 sing 30 n n C3 C4 800 sing 31 n y N10 C9 800 sing 32 n n C13 C7 800 doub 33 n y O29 C9 800 doub 34 n n C9 C1 800 sing 35 n n C1 C5 800 doub 36 n y C4 C5 800 sing 37 n y C4 C6 800 doub 38 n y C7 C6 800 sing 39 n y C10 H1 800 sing 40 n n C10 H2 800 sing 41 n n C10 H3 800 sing 42 n n C11 H4 800 sing 43 n n C13 H5 800 sing 44 n n C14 H6 800 sing 45 n n C16 H7 800 sing 46 n n C17 H8 800 sing 47 n n C19 H9 800 sing 48 n n C19 H10 800 sing 49 n n C20 H11 800 sing 50 n n C21 H12 800 sing 51 n n C21 H13 800 sing 52 n n C22 H14 800 sing 53 n n C22 H15 800 sing 54 n n C30 H16 800 sing 55 n n C32 H17 800 sing 56 n n C32 H18 800 sing 57 n n C32 H19 800 sing 58 n n C34 H20 800 sing 59 n n C34 H21 800 sing 60 n n C35 H22 800 sing 61 n n C36 H23 800 sing 62 n n C36 H24 800 sing 63 n n C36 H25 800 sing 64 n n C37 H26 800 sing 65 n n C37 H27 800 sing 66 n n C37 H28 800 sing 67 n n C5 H29 800 sing 68 n n C6 H30 800 sing 69 n n C7 H31 800 sing 70 n n C8 H32 800 sing 71 n n C8 H33 800 sing 72 n n N10 H34 800 sing 73 n n N13 H35 800 sing 74 n n N16 H36 800 sing 75 n n N2 H37 800 sing 76 n n N23 H38 800 sing 77 n n O1 H39 800 sing 78 n n # _atom_sites.entry_id 7RW1 _atom_sites.fract_transf_matrix[1][1] 0.017973 _atom_sites.fract_transf_matrix[1][2] -0.006766 _atom_sites.fract_transf_matrix[1][3] -0.006828 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017491 _atom_sites.fract_transf_matrix[2][3] -0.001101 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 800 A 1 401 401 800 i27 . D 2 800 B 1 401 401 800 i27 . E 3 HOH A 1 501 117 HOH HOH . E 3 HOH A 2 502 36 HOH HOH . E 3 HOH A 3 503 30 HOH HOH . E 3 HOH A 4 504 97 HOH HOH . E 3 HOH A 5 505 94 HOH HOH . E 3 HOH A 6 506 69 HOH HOH . E 3 HOH A 7 507 81 HOH HOH . E 3 HOH A 8 508 89 HOH HOH . E 3 HOH A 9 509 98 HOH HOH . E 3 HOH A 10 510 25 HOH HOH . E 3 HOH A 11 511 71 HOH HOH . E 3 HOH A 12 512 41 HOH HOH . E 3 HOH A 13 513 86 HOH HOH . E 3 HOH A 14 514 23 HOH HOH . E 3 HOH A 15 515 119 HOH HOH . E 3 HOH A 16 516 55 HOH HOH . E 3 HOH A 17 517 110 HOH HOH . E 3 HOH A 18 518 22 HOH HOH . E 3 HOH A 19 519 38 HOH HOH . E 3 HOH A 20 520 53 HOH HOH . E 3 HOH A 21 521 28 HOH HOH . E 3 HOH A 22 522 34 HOH HOH . E 3 HOH A 23 523 24 HOH HOH . E 3 HOH A 24 524 35 HOH HOH . E 3 HOH A 25 525 12 HOH HOH . E 3 HOH A 26 526 2 HOH HOH . E 3 HOH A 27 527 63 HOH HOH . E 3 HOH A 28 528 3 HOH HOH . E 3 HOH A 29 529 105 HOH HOH . E 3 HOH A 30 530 5 HOH HOH . E 3 HOH A 31 531 4 HOH HOH . E 3 HOH A 32 532 122 HOH HOH . E 3 HOH A 33 533 20 HOH HOH . E 3 HOH A 34 534 82 HOH HOH . E 3 HOH A 35 535 40 HOH HOH . E 3 HOH A 36 536 75 HOH HOH . E 3 HOH A 37 537 106 HOH HOH . E 3 HOH A 38 538 7 HOH HOH . E 3 HOH A 39 539 13 HOH HOH . E 3 HOH A 40 540 58 HOH HOH . E 3 HOH A 41 541 115 HOH HOH . E 3 HOH A 42 542 56 HOH HOH . E 3 HOH A 43 543 67 HOH HOH . E 3 HOH A 44 544 111 HOH HOH . E 3 HOH A 45 545 120 HOH HOH . E 3 HOH A 46 546 61 HOH HOH . E 3 HOH A 47 547 66 HOH HOH . E 3 HOH A 48 548 113 HOH HOH . E 3 HOH A 49 549 33 HOH HOH . E 3 HOH A 50 550 118 HOH HOH . E 3 HOH A 51 551 74 HOH HOH . E 3 HOH A 52 552 107 HOH HOH . E 3 HOH A 53 553 43 HOH HOH . E 3 HOH A 54 554 88 HOH HOH . E 3 HOH A 55 555 42 HOH HOH . E 3 HOH A 56 556 65 HOH HOH . E 3 HOH A 57 557 112 HOH HOH . E 3 HOH A 58 558 83 HOH HOH . F 3 HOH B 1 501 93 HOH HOH . F 3 HOH B 2 502 47 HOH HOH . F 3 HOH B 3 503 62 HOH HOH . F 3 HOH B 4 504 1 HOH HOH . F 3 HOH B 5 505 49 HOH HOH . F 3 HOH B 6 506 87 HOH HOH . F 3 HOH B 7 507 80 HOH HOH . F 3 HOH B 8 508 29 HOH HOH . F 3 HOH B 9 509 19 HOH HOH . F 3 HOH B 10 510 121 HOH HOH . F 3 HOH B 11 511 9 HOH HOH . F 3 HOH B 12 512 45 HOH HOH . F 3 HOH B 13 513 60 HOH HOH . F 3 HOH B 14 514 21 HOH HOH . F 3 HOH B 15 515 51 HOH HOH . F 3 HOH B 16 516 64 HOH HOH . F 3 HOH B 17 517 52 HOH HOH . F 3 HOH B 18 518 103 HOH HOH . F 3 HOH B 19 519 77 HOH HOH . F 3 HOH B 20 520 70 HOH HOH . F 3 HOH B 21 521 39 HOH HOH . F 3 HOH B 22 522 26 HOH HOH . F 3 HOH B 23 523 8 HOH HOH . F 3 HOH B 24 524 59 HOH HOH . F 3 HOH B 25 525 100 HOH HOH . F 3 HOH B 26 526 6 HOH HOH . F 3 HOH B 27 527 78 HOH HOH . F 3 HOH B 28 528 109 HOH HOH . F 3 HOH B 29 529 15 HOH HOH . F 3 HOH B 30 530 46 HOH HOH . F 3 HOH B 31 531 101 HOH HOH . F 3 HOH B 32 532 96 HOH HOH . F 3 HOH B 33 533 84 HOH HOH . F 3 HOH B 34 534 116 HOH HOH . F 3 HOH B 35 535 95 HOH HOH . F 3 HOH B 36 536 114 HOH HOH . F 3 HOH B 37 537 54 HOH HOH . F 3 HOH B 38 538 76 HOH HOH . F 3 HOH B 39 539 32 HOH HOH . F 3 HOH B 40 540 85 HOH HOH . F 3 HOH B 41 541 57 HOH HOH . F 3 HOH B 42 542 68 HOH HOH . F 3 HOH B 43 543 50 HOH HOH . F 3 HOH B 44 544 27 HOH HOH . F 3 HOH B 45 545 18 HOH HOH . F 3 HOH B 46 546 10 HOH HOH . F 3 HOH B 47 547 37 HOH HOH . F 3 HOH B 48 548 14 HOH HOH . F 3 HOH B 49 549 90 HOH HOH . F 3 HOH B 50 550 16 HOH HOH . F 3 HOH B 51 551 73 HOH HOH . F 3 HOH B 52 552 11 HOH HOH . F 3 HOH B 53 553 17 HOH HOH . F 3 HOH B 54 554 48 HOH HOH . F 3 HOH B 55 555 31 HOH HOH . F 3 HOH B 56 556 91 HOH HOH . F 3 HOH B 57 557 79 HOH HOH . F 3 HOH B 58 558 44 HOH HOH . F 3 HOH B 59 559 92 HOH HOH . F 3 HOH B 60 560 104 HOH HOH . F 3 HOH B 61 561 72 HOH HOH . F 3 HOH B 62 562 108 HOH HOH . F 3 HOH B 63 563 102 HOH HOH . F 3 HOH B 64 564 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 800 . . . D 2 -42.116 -2.537 24.621 1 39.98 ? C1 800 401 B 1 HETATM 2 C C10 800 . . . D 2 -37.463 -1.519 25.181 1 23.4 ? C10 800 401 B 1 HETATM 3 C C11 800 . . . D 2 -39.15 -0.593 23.526 1 24.62 ? C11 800 401 B 1 HETATM 4 C C12 800 . . . D 2 -39.447 -0.698 22.037 1 20.36 ? C12 800 401 B 1 HETATM 5 C C13 800 . . . D 2 -45.566 -5.46 24.372 1 45.84 ? C13 800 401 B 1 HETATM 6 C C14 800 . . . D 2 -40.29 0.721 20.234 1 13.39 ? C14 800 401 B 1 HETATM 7 C C15 800 . . . D 2 -38.96 1.356 19.952 1 10.98 ? C15 800 401 B 1 HETATM 8 C C16 800 . . . D 2 -45.156 -4.269 23.789 1 45.08 ? C16 800 401 B 1 HETATM 9 C C17 800 . . . D 2 -37.006 1.48 18.417 1 13.29 ? C17 800 401 B 1 HETATM 10 C C19 800 . . . D 2 -36.029 0.287 18.432 1 9.83 ? C19 800 401 B 1 HETATM 11 C C20 800 . . . D 2 -35.906 -0.381 19.809 1 12.02 ? C20 800 401 B 1 HETATM 12 C C21 800 . . . D 2 -35.148 0.5 20.807 1 10.94 ? C21 800 401 B 1 HETATM 13 C C22 800 . . . D 2 -34.186 -0.431 21.543 1 12.13 ? C22 800 401 B 1 HETATM 14 C C24 800 . . . D 2 -35.086 -1.64 19.78 1 12.31 ? C24 800 401 B 1 HETATM 15 C C3 800 . . . D 2 -43.959 -3.723 24.214 1 48.79 ? C3 800 401 B 1 HETATM 16 C C30 800 . . . D 2 -37.659 -0.696 23.908 1 21.6 ? C30 800 401 B 1 HETATM 17 C C32 800 . . . D 2 -36.982 0.671 24.06 1 17.41 ? C32 800 401 B 1 HETATM 18 C C34 800 . . . D 2 -41.359 1.789 20.063 1 12.83 ? C34 800 401 B 1 HETATM 19 C C35 800 . . . D 2 -42.584 1.301 19.289 1 15.99 ? C35 800 401 B 1 HETATM 20 C C36 800 . . . D 2 -43.708 2.338 19.316 1 18.97 ? C36 800 401 B 1 HETATM 21 C C37 800 . . . D 2 -43.117 -0.021 19.812 1 15.88 ? C37 800 401 B 1 HETATM 22 C C4 800 . . . D 2 -43.175 -4.396 25.259 1 44.02 ? C4 800 401 B 1 HETATM 23 C C5 800 . . . D 2 -41.986 -3.626 25.514 1 39.9 ? C5 800 401 B 1 HETATM 24 C C6 800 . . . D 2 -43.656 -5.598 25.801 1 42.46 ? C6 800 401 B 1 HETATM 25 C C7 800 . . . D 2 -44.885 -6.153 25.372 1 40.19 ? C7 800 401 B 1 HETATM 26 C C8 800 . . . D 2 -36.95 2.16 17.045 1 12.47 ? C8 800 401 B 1 HETATM 27 C C9 800 . . . D 2 -41.186 -1.389 24.421 1 32.91 ? C9 800 401 B 1 HETATM 28 N N10 800 . . . D 2 -39.901 -1.6 24.234 1 26.11 ? N10 800 401 B 1 HETATM 29 N N13 800 . . . D 2 -40.36 0.164 21.579 1 18.78 ? N13 800 401 B 1 HETATM 30 N N16 800 . . . D 2 -38.382 1.102 18.764 1 10.48 ? N16 800 401 B 1 HETATM 31 N N2 800 . . . D 2 -43.256 -2.624 23.894 1 45.67 ? N2 800 401 B 1 HETATM 32 N N23 800 . . . D 2 -34.217 -1.678 20.793 1 10.26 ? N23 800 401 B 1 HETATM 33 O O1 800 . . . D 2 -35.609 2.597 16.796 1 9.86 ? O1 800 401 B 1 HETATM 34 O O26 800 . . . D 2 -35.215 -2.497 18.918 1 14.62 ? O26 800 401 B 1 HETATM 35 O O29 800 . . . D 2 -41.635 -0.256 24.394 1 39.63 ? O29 800 401 B 1 HETATM 36 O O33 800 . . . D 2 -38.889 -1.519 21.301 1 15.45 ? O33 800 401 B 1 HETATM 37 O O38 800 . . . D 2 -38.478 2.076 20.806 1 11.25 ? O38 800 401 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 37 #