data_7RWU # _model_server_result.job_id tn8084OzclpDwDzfg1M88Q _model_server_result.datetime_utc '2024-12-27 05:14:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7RWU # _exptl.entry_id 7RWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RWU _cell.length_a 94.26 _cell.length_b 94.26 _cell.length_c 94.26 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall 'P 4bd 2ab 3' _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -47.13 -47.13 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 47.13 -47.13 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N ALA 1 A ALA 1 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 A SD MET 7 A MET 7 1_555 F FE HEC . A HEC 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc4 A OD2 ASP 39 A ASP 39 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc5 A NE2 HIS 59 A HIS 59 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 A NE2 HIS 59 A HIS 59 1_555 B NI NI . A NI 201 8_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc7 A NE2 HIS 63 A HIS 63 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 A NE2 HIS 63 A HIS 63 1_555 B NI NI . A NI 201 8_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc9 A NE2 HIS 73 A HIS 73 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 A NE2 HIS 73 A HIS 73 1_555 C NI NI . A NI 202 8_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc11 A NE2 HIS 77 A HIS 77 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc12 A NE2 HIS 77 A HIS 77 1_555 C NI NI . A NI 202 8_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc13 A NE2 HIS 102 A HIS 102 1_555 F FE HEC . A HEC 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc14 D NI NI . A NI 203 1_555 E O2 TRS . A TRS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc15 D NI NI . A NI 203 1_555 E N TRS . A TRS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc16 D NI NI . A NI 203 1_555 E O3 TRS . A TRS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7RWU _atom_sites.fract_transf_matrix[1][1] 0.010609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 2 NI NI . C 2 NI A 1 202 3 NI NI . D 2 NI A 1 203 4 NI NI . E 3 TRS A 1 204 1 TRS TRS . F 4 HEC A 1 205 1 HEC HEM . G 5 CL A 1 206 1 CL CL . H 6 HOH A 1 301 160 HOH HOH . H 6 HOH A 2 302 142 HOH HOH . H 6 HOH A 3 303 84 HOH HOH . H 6 HOH A 4 304 46 HOH HOH . H 6 HOH A 5 305 105 HOH HOH . H 6 HOH A 6 306 159 HOH HOH . H 6 HOH A 7 307 122 HOH HOH . H 6 HOH A 8 308 124 HOH HOH . H 6 HOH A 9 309 162 HOH HOH . H 6 HOH A 10 310 47 HOH HOH . H 6 HOH A 11 311 106 HOH HOH . H 6 HOH A 12 312 141 HOH HOH . H 6 HOH A 13 313 34 HOH HOH . H 6 HOH A 14 314 163 HOH HOH . H 6 HOH A 15 315 134 HOH HOH . H 6 HOH A 16 316 20 HOH HOH . H 6 HOH A 17 317 168 HOH HOH . H 6 HOH A 18 318 91 HOH HOH . H 6 HOH A 19 319 145 HOH HOH . H 6 HOH A 20 320 150 HOH HOH . H 6 HOH A 21 321 50 HOH HOH . H 6 HOH A 22 322 126 HOH HOH . H 6 HOH A 23 323 8 HOH HOH . H 6 HOH A 24 324 23 HOH HOH . H 6 HOH A 25 325 130 HOH HOH . H 6 HOH A 26 326 129 HOH HOH . H 6 HOH A 27 327 112 HOH HOH . H 6 HOH A 28 328 131 HOH HOH . H 6 HOH A 29 329 29 HOH HOH . H 6 HOH A 30 330 32 HOH HOH . H 6 HOH A 31 331 31 HOH HOH . H 6 HOH A 32 332 94 HOH HOH . H 6 HOH A 33 333 49 HOH HOH . H 6 HOH A 34 334 9 HOH HOH . H 6 HOH A 35 335 33 HOH HOH . H 6 HOH A 36 336 4 HOH HOH . H 6 HOH A 37 337 43 HOH HOH . H 6 HOH A 38 338 110 HOH HOH . H 6 HOH A 39 339 111 HOH HOH . H 6 HOH A 40 340 14 HOH HOH . H 6 HOH A 41 341 25 HOH HOH . H 6 HOH A 42 342 17 HOH HOH . H 6 HOH A 43 343 41 HOH HOH . H 6 HOH A 44 344 13 HOH HOH . H 6 HOH A 45 345 18 HOH HOH . H 6 HOH A 46 346 59 HOH HOH . H 6 HOH A 47 347 44 HOH HOH . H 6 HOH A 48 348 10 HOH HOH . H 6 HOH A 49 349 35 HOH HOH . H 6 HOH A 50 350 39 HOH HOH . H 6 HOH A 51 351 79 HOH HOH . H 6 HOH A 52 352 60 HOH HOH . H 6 HOH A 53 353 3 HOH HOH . H 6 HOH A 54 354 109 HOH HOH . H 6 HOH A 55 355 26 HOH HOH . H 6 HOH A 56 356 137 HOH HOH . H 6 HOH A 57 357 55 HOH HOH . H 6 HOH A 58 358 16 HOH HOH . H 6 HOH A 59 359 37 HOH HOH . H 6 HOH A 60 360 21 HOH HOH . H 6 HOH A 61 361 19 HOH HOH . H 6 HOH A 62 362 169 HOH HOH . H 6 HOH A 63 363 22 HOH HOH . H 6 HOH A 64 364 99 HOH HOH . H 6 HOH A 65 365 45 HOH HOH . H 6 HOH A 66 366 56 HOH HOH . H 6 HOH A 67 367 12 HOH HOH . H 6 HOH A 68 368 87 HOH HOH . H 6 HOH A 69 369 76 HOH HOH . H 6 HOH A 70 370 28 HOH HOH . H 6 HOH A 71 371 5 HOH HOH . H 6 HOH A 72 372 101 HOH HOH . H 6 HOH A 73 373 121 HOH HOH . H 6 HOH A 74 374 65 HOH HOH . H 6 HOH A 75 375 90 HOH HOH . H 6 HOH A 76 376 93 HOH HOH . H 6 HOH A 77 377 123 HOH HOH . H 6 HOH A 78 378 30 HOH HOH . H 6 HOH A 79 379 1 HOH HOH . H 6 HOH A 80 380 54 HOH HOH . H 6 HOH A 81 381 173 HOH HOH . H 6 HOH A 82 382 53 HOH HOH . H 6 HOH A 83 383 133 HOH HOH . H 6 HOH A 84 384 36 HOH HOH . H 6 HOH A 85 385 132 HOH HOH . H 6 HOH A 86 386 171 HOH HOH . H 6 HOH A 87 387 27 HOH HOH . H 6 HOH A 88 388 7 HOH HOH . H 6 HOH A 89 389 72 HOH HOH . H 6 HOH A 90 390 40 HOH HOH . H 6 HOH A 91 391 6 HOH HOH . H 6 HOH A 92 392 80 HOH HOH . H 6 HOH A 93 393 74 HOH HOH . H 6 HOH A 94 394 48 HOH HOH . H 6 HOH A 95 395 61 HOH HOH . H 6 HOH A 96 396 119 HOH HOH . H 6 HOH A 97 397 116 HOH HOH . H 6 HOH A 98 398 24 HOH HOH . H 6 HOH A 99 399 139 HOH HOH . H 6 HOH A 100 400 135 HOH HOH . H 6 HOH A 101 401 128 HOH HOH . H 6 HOH A 102 402 11 HOH HOH . H 6 HOH A 103 403 167 HOH HOH . H 6 HOH A 104 404 2 HOH HOH . H 6 HOH A 105 405 115 HOH HOH . H 6 HOH A 106 406 96 HOH HOH . H 6 HOH A 107 407 69 HOH HOH . H 6 HOH A 108 408 15 HOH HOH . H 6 HOH A 109 409 89 HOH HOH . H 6 HOH A 110 410 172 HOH HOH . H 6 HOH A 111 411 70 HOH HOH . H 6 HOH A 112 412 102 HOH HOH . H 6 HOH A 113 413 81 HOH HOH . H 6 HOH A 114 414 151 HOH HOH . H 6 HOH A 115 415 149 HOH HOH . H 6 HOH A 116 416 147 HOH HOH . H 6 HOH A 117 417 144 HOH HOH . H 6 HOH A 118 418 64 HOH HOH . H 6 HOH A 119 419 85 HOH HOH . H 6 HOH A 120 420 92 HOH HOH . H 6 HOH A 121 421 88 HOH HOH . H 6 HOH A 122 422 125 HOH HOH . H 6 HOH A 123 423 82 HOH HOH . H 6 HOH A 124 424 114 HOH HOH . H 6 HOH A 125 425 138 HOH HOH . H 6 HOH A 126 426 143 HOH HOH . H 6 HOH A 127 427 148 HOH HOH . H 6 HOH A 128 428 67 HOH HOH . H 6 HOH A 129 429 75 HOH HOH . H 6 HOH A 130 430 52 HOH HOH . H 6 HOH A 131 431 127 HOH HOH . H 6 HOH A 132 432 146 HOH HOH . H 6 HOH A 133 433 155 HOH HOH . H 6 HOH A 134 434 63 HOH HOH . H 6 HOH A 135 435 153 HOH HOH . H 6 HOH A 136 436 113 HOH HOH . H 6 HOH A 137 437 58 HOH HOH . H 6 HOH A 138 438 166 HOH HOH . H 6 HOH A 139 439 95 HOH HOH . H 6 HOH A 140 440 38 HOH HOH . H 6 HOH A 141 441 170 HOH HOH . H 6 HOH A 142 442 66 HOH HOH . H 6 HOH A 143 443 103 HOH HOH . H 6 HOH A 144 444 71 HOH HOH . H 6 HOH A 145 445 86 HOH HOH . H 6 HOH A 146 446 104 HOH HOH . H 6 HOH A 147 447 77 HOH HOH . H 6 HOH A 148 448 98 HOH HOH . H 6 HOH A 149 449 157 HOH HOH . H 6 HOH A 150 450 108 HOH HOH . H 6 HOH A 151 451 57 HOH HOH . H 6 HOH A 152 452 62 HOH HOH . H 6 HOH A 153 453 73 HOH HOH . H 6 HOH A 154 454 78 HOH HOH . H 6 HOH A 155 455 164 HOH HOH . H 6 HOH A 156 456 120 HOH HOH . H 6 HOH A 157 457 42 HOH HOH . H 6 HOH A 158 458 107 HOH HOH . H 6 HOH A 159 459 100 HOH HOH . H 6 HOH A 160 460 152 HOH HOH . H 6 HOH A 161 461 83 HOH HOH . H 6 HOH A 162 462 118 HOH HOH . H 6 HOH A 163 463 156 HOH HOH . H 6 HOH A 164 464 165 HOH HOH . H 6 HOH A 165 465 154 HOH HOH . H 6 HOH A 166 466 51 HOH HOH . H 6 HOH A 167 467 161 HOH HOH . H 6 HOH A 168 468 136 HOH HOH . H 6 HOH A 169 469 97 HOH HOH . H 6 HOH A 170 470 140 HOH HOH . H 6 HOH A 171 471 68 HOH HOH . H 6 HOH A 172 472 158 HOH HOH . H 6 HOH A 173 473 117 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.191 _atom_site.Cartn_y -27.939 _atom_site.Cartn_z -19.191 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 13.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #