data_7RX2
#
_model_server_result.job_id            ElreeXWdAaTkOT22QJKhZQ 
_model_server_result.datetime_utc      '2025-04-05 10:41:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rx2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1508}' 
#
_entry.id    7RX2 
#
_exptl.entry_id    7RX2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RX2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RX2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 445 B GLU 445 1_555 C CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc2 A OE1 GLU 445 B GLU 445 1_555 D CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc3 A OD1 ASP 511 B ASP 511 1_555 C CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 A OE2 GLU 514 B GLU 514 1_555 C CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc5 A OE1 GLU 514 B GLU 514 1_555 D CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc6 A OE2 GLU 543 B GLU 543 1_555 C CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc7 A OE1 GLU 543 B GLU 543 1_555 D CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc8 A OE2 GLU 543 B GLU 543 1_555 D CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc9 A OD1 ASP 547 B ASP 547 1_555 C CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
metalc ? metalc10 A OD2 ASP 547 B ASP 547 1_555 C CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc11 B OE2 GLU 445 A GLU 445 1_555 M CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc12 B OE1 GLU 445 A GLU 445 1_555 N CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc13 B OD1 ASP 511 A ASP 511 1_555 M CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc14 B OE2 GLU 514 A GLU 514 1_555 M CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc15 B OE1 GLU 514 A GLU 514 1_555 N CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc16 B OE2 GLU 543 A GLU 543 1_555 M CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc17 B OE1 GLU 543 A GLU 543 1_555 N CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc18 B OE2 GLU 543 A GLU 543 1_555 N CA CA . A CA 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc19 B OD1 ASP 547 A ASP 547 1_555 M CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc20 B OD2 ASP 547 A ASP 547 1_555 M CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 237 n n 
CAD HAD PGW sing 238 n n 
CAD HADA PGW sing 239 n n 
OAE CAD PGW sing 240 n n 
OAE HOAE PGW sing 241 n n 
OAF C05 PGW sing 242 n n 
OAF HOAF PGW sing 243 n n 
P O13 PGW sing 244 n n 
P O11 PGW sing 245 n n 
C01 O03 PGW sing 246 n n 
C01 C02 PGW sing 247 n n 
C01 H01 PGW sing 248 n n 
C01 H01A PGW sing 249 n n 
C1 C2 PGW sing 250 n n 
O01 C1 PGW sing 251 n n 
C02 O01 PGW sing 252 n n 
C02 H02 PGW sing 253 n n 
C2 C3 PGW sing 254 n n 
C2 H2 PGW sing 255 n n 
C2 H2A PGW sing 256 n n 
O02 C1 PGW doub 257 n n 
C03 C02 PGW sing 258 n n 
C03 H03 PGW sing 259 n n 
C03 H03A PGW sing 260 n n 
C3 C4 PGW sing 261 n n 
C3 H3 PGW sing 262 n n 
C3 H3A PGW sing 263 n n 
C04 C05 PGW sing 264 n n 
C04 O12 PGW sing 265 n n 
C04 H04 PGW sing 266 n n 
C04 H04A PGW sing 267 n n 
C4 C5 PGW sing 268 n n 
C4 H4 PGW sing 269 n n 
C4 H4A PGW sing 270 n n 
O04 C19 PGW doub 271 n n 
C05 H05 PGW sing 272 n n 
C5 C6 PGW sing 273 n n 
C5 H5 PGW sing 274 n n 
C5 H5A PGW sing 275 n n 
C06 C07 PGW sing 276 n n 
C06 H06 PGW sing 277 n n 
C06 H06A PGW sing 278 n n 
C6 C7 PGW sing 279 n n 
C6 H6 PGW sing 280 n n 
C6 H6A PGW sing 281 n n 
C07 H07 PGW sing 282 n n 
C07 H07A PGW sing 283 n n 
C7 C8 PGW sing 284 n n 
C7 H7 PGW sing 285 n n 
C7 H7A PGW sing 286 n n 
C08 C07 PGW sing 287 n n 
C08 H08 PGW sing 288 n n 
C08 H08A PGW sing 289 n n 
C8 C9 PGW sing 290 n n 
C8 H8 PGW sing 291 n n 
C8 H8A PGW sing 292 n n 
C09 C08 PGW sing 293 n n 
C09 C11 PGW sing 294 n n 
C09 H09 PGW sing 295 n n 
C09 H09A PGW sing 296 n n 
C9 C10 PGW doub 297 z n 
C10 C06 PGW sing 298 n n 
C11 H11 PGW sing 299 n n 
C11 H11A PGW sing 300 n n 
O11 C03 PGW sing 301 n n 
C12 C11 PGW sing 302 n n 
C12 H12 PGW sing 303 n n 
C12 H12A PGW sing 304 n n 
O12 P PGW sing 305 n n 
C13 C12 PGW sing 306 n n 
C13 C14 PGW sing 307 n n 
C13 H13 PGW sing 308 n n 
C13 H13A PGW sing 309 n n 
O13 HO13 PGW sing 310 n n 
C14 H14 PGW sing 311 n n 
C14 H14A PGW sing 312 n n 
C14 H14B PGW sing 313 n n 
O14 P PGW doub 314 n n 
C15 C16 PGW sing 315 n n 
C15 H15 PGW sing 316 n n 
C15 H15A PGW sing 317 n n 
C16 H16 PGW sing 318 n n 
C16 H16A PGW sing 319 n n 
C17 C16 PGW sing 320 n n 
C17 C18 PGW sing 321 n n 
C17 H17 PGW sing 322 n n 
C17 H17A PGW sing 323 n n 
C18 C28 PGW sing 324 n n 
C18 H18 PGW sing 325 n n 
C18 H18A PGW sing 326 n n 
C19 O03 PGW sing 327 n n 
C19 C20 PGW sing 328 n n 
C20 C21 PGW sing 329 n n 
C20 H20 PGW sing 330 n n 
C20 H20A PGW sing 331 n n 
C21 C22 PGW sing 332 n n 
C21 H21 PGW sing 333 n n 
C21 H21A PGW sing 334 n n 
C22 C23 PGW sing 335 n n 
C22 H22 PGW sing 336 n n 
C22 H22A PGW sing 337 n n 
C23 C24 PGW sing 338 n n 
C23 H23 PGW sing 339 n n 
C23 H23A PGW sing 340 n n 
C24 C25 PGW sing 341 n n 
C24 H24 PGW sing 342 n n 
C24 H24A PGW sing 343 n n 
C25 C26 PGW sing 344 n n 
C25 H25 PGW sing 345 n n 
C25 H25A PGW sing 346 n n 
C26 C27 PGW sing 347 n n 
C26 H26 PGW sing 348 n n 
C26 H26A PGW sing 349 n n 
C27 C15 PGW sing 350 n n 
C27 H27 PGW sing 351 n n 
C27 H27A PGW sing 352 n n 
C28 H28 PGW sing 353 n n 
C28 H28A PGW sing 354 n n 
C29 H29 PGW sing 355 n n 
C29 H29A PGW sing 356 n n 
C29 H29B PGW sing 357 n n 
C30 C28 PGW sing 358 n n 
C30 C29 PGW sing 359 n n 
C30 H30 PGW sing 360 n n 
C30 H30A PGW sing 361 n n 
C9 H9 PGW sing 362 n n 
C10 H10 PGW sing 363 n n 
#
_atom_sites.entry_id                     7RX2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA B 1 801 801 CA CA . 
D 2 CA B 1 802 802 CA CA . 
E 3 PGW B 1 803 901 PGW PGW . 
F 3 PGW B 1 804 1001 PGW PGW . 
G 3 PGW B 1 805 1101 PGW PGW . 
H 3 PGW B 1 806 1201 PGW PGW . 
I 3 PGW B 1 807 1401 PGW PGW . 
J 3 PGW B 1 808 2201 PGW PGW . 
K 3 PGW B 1 809 1501 PGW PGW . 
L 3 PGW A 1 1501 1501 PGW PGW . 
M 2 CA A 1 1502 801 CA CA . 
N 2 CA A 1 1503 802 CA CA . 
O 3 PGW A 1 1504 901 PGW PGW . 
P 3 PGW A 1 1505 1001 PGW PGW . 
Q 3 PGW A 1 1506 1101 PGW PGW . 
R 3 PGW A 1 1507 1201 PGW PGW . 
S 3 PGW A 1 1508 1401 PGW PGW . 
T 3 PGW A 1 1509 2201 PGW PGW . 
U 4 HOH B 1 2301 2301 HOH HOH . 
U 4 HOH B 2 2302 2001 HOH HOH . 
U 4 HOH B 3 2303 2101 HOH HOH . 
V 4 HOH A 1 2301 2301 HOH HOH . 
V 4 HOH A 2 2302 2001 HOH HOH . 
V 4 HOH A 3 2303 2101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PGW . . . S 3 136.012 103.596 135.812 1 68.69 ? P PGW 1508 A 1 
HETATM 2 C C01 PGW . . . S 3 132.923 105.865 137.3 1 68.69 ? C01 PGW 1508 A 1 
HETATM 3 C C1 PGW . . . S 3 134.939 106.839 139.226 1 68.69 ? C1 PGW 1508 A 1 
HETATM 4 O O01 PGW . . . S 3 134.5 107.539 138.069 1 68.69 ? O01 PGW 1508 A 1 
HETATM 5 C C02 PGW . . . S 3 134.082 106.794 136.936 1 68.69 ? C02 PGW 1508 A 1 
HETATM 6 C C2 PGW . . . S 3 135.089 107.622 140.549 1 68.69 ? C2 PGW 1508 A 1 
HETATM 7 O O02 PGW . . . S 3 135.199 105.684 139.206 1 68.69 ? O02 PGW 1508 A 1 
HETATM 8 C C03 PGW . . . S 3 135.232 106.012 136.33 1 68.69 ? C03 PGW 1508 A 1 
HETATM 9 C C3 PGW . . . S 3 136.446 107.289 141.199 1 68.69 ? C3 PGW 1508 A 1 
HETATM 10 O O03 PGW . . . S 3 131.789 106.653 137.505 1 68.69 ? O03 PGW 1508 A 1 
HETATM 11 C C4 PGW . . . S 3 136.68 108.262 142.369 1 68.69 ? C4 PGW 1508 A 1 
HETATM 12 O O04 PGW . . . S 3 131.318 105.313 139.226 1 68.69 ? O04 PGW 1508 A 1 
HETATM 13 C C5 PGW . . . S 3 135.325 108.668 142.946 1 68.69 ? C5 PGW 1508 A 1 
HETATM 14 C C06 PGW . . . S 3 135.825 112.742 147.309 1 68.69 ? C06 PGW 1508 A 1 
HETATM 15 C C6 PGW . . . S 3 135.516 109.711 144.051 1 68.69 ? C6 PGW 1508 A 1 
HETATM 16 C C07 PGW . . . S 3 134.98 113.737 148.113 1 68.69 ? C07 PGW 1508 A 1 
HETATM 17 C C7 PGW . . . S 3 136.585 109.218 145.035 1 68.69 ? C7 PGW 1508 A 1 
HETATM 18 C C08 PGW . . . S 3 134.107 114.581 147.168 1 68.69 ? C08 PGW 1508 A 1 
HETATM 19 C C8 PGW . . . S 3 136.914 110.388 146.005 1 68.69 ? C8 PGW 1508 A 1 
HETATM 20 C C9 PGW . . . S 3 136.066 110.264 147.271 1 68.69 ? C9 PGW 1508 A 1 
HETATM 21 C C10 PGW . . . S 3 135.57 111.337 147.866 1 68.69 ? C10 PGW 1508 A 1 
HETATM 22 O O11 PGW . . . S 3 135.025 104.667 136.547 1 68.69 ? O11 PGW 1508 A 1 
HETATM 23 O O12 PGW . . . S 3 135.807 103.712 134.193 1 68.69 ? O12 PGW 1508 A 1 
HETATM 24 O O13 PGW . . . S 3 137.449 103.897 136.159 1 68.69 ? O13 PGW 1508 A 1 
HETATM 25 O O14 PGW . . . S 3 135.656 102.204 136.266 1 68.69 ? O14 PGW 1508 A 1 
HETATM 26 C C19 PGW . . . S 3 130.967 106.217 138.546 1 68.69 ? C19 PGW 1508 A 1 
HETATM 27 C C20 PGW . . . S 3 129.626 106.906 138.79 1 68.69 ? C20 PGW 1508 A 1 
HETATM 28 C C21 PGW . . . S 3 129.459 107.216 140.273 1 68.69 ? C21 PGW 1508 A 1 
HETATM 29 C C22 PGW . . . S 3 130.655 108.019 140.778 1 68.69 ? C22 PGW 1508 A 1 
HETATM 30 C C23 PGW . . . S 3 130.504 108.258 142.286 1 68.69 ? C23 PGW 1508 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#