data_7RXH # _model_server_result.job_id xFd0EH3woBRs1-ak4_2kyQ _model_server_result.datetime_utc '2024-11-27 18:56:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 7RXH # _exptl.entry_id 7RXH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 445 A GLU 445 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc2 A OE1 GLU 445 A GLU 445 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc3 A OD1 ASP 511 A ASP 511 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc4 A OE1 GLU 514 A GLU 514 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 A OE2 GLU 514 A GLU 514 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc6 A OE1 GLU 543 A GLU 543 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc7 A OE1 GLU 543 A GLU 543 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc8 A OE2 GLU 543 A GLU 543 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc9 A OD1 ASP 547 A ASP 547 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc10 A OD2 ASP 547 A ASP 547 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc11 B CA CA . A CA 801 1_555 T O HOH . A HOH 2719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc12 C CA CA . A CA 802 1_555 T O HOH . A HOH 2710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 237 n n CAD HAD PGW sing 238 n n CAD HADA PGW sing 239 n n OAE CAD PGW sing 240 n n OAE HOAE PGW sing 241 n n OAF C05 PGW sing 242 n n OAF HOAF PGW sing 243 n n P O13 PGW sing 244 n n P O11 PGW sing 245 n n C01 O03 PGW sing 246 n n C01 C02 PGW sing 247 n n C01 H01 PGW sing 248 n n C01 H01A PGW sing 249 n n C1 C2 PGW sing 250 n n O01 C1 PGW sing 251 n n C02 O01 PGW sing 252 n n C02 H02 PGW sing 253 n n C2 C3 PGW sing 254 n n C2 H2 PGW sing 255 n n C2 H2A PGW sing 256 n n O02 C1 PGW doub 257 n n C03 C02 PGW sing 258 n n C03 H03 PGW sing 259 n n C03 H03A PGW sing 260 n n C3 C4 PGW sing 261 n n C3 H3 PGW sing 262 n n C3 H3A PGW sing 263 n n C04 C05 PGW sing 264 n n C04 O12 PGW sing 265 n n C04 H04 PGW sing 266 n n C04 H04A PGW sing 267 n n C4 C5 PGW sing 268 n n C4 H4 PGW sing 269 n n C4 H4A PGW sing 270 n n O04 C19 PGW doub 271 n n C05 H05 PGW sing 272 n n C5 C6 PGW sing 273 n n C5 H5 PGW sing 274 n n C5 H5A PGW sing 275 n n C06 C07 PGW sing 276 n n C06 H06 PGW sing 277 n n C06 H06A PGW sing 278 n n C6 C7 PGW sing 279 n n C6 H6 PGW sing 280 n n C6 H6A PGW sing 281 n n C07 H07 PGW sing 282 n n C07 H07A PGW sing 283 n n C7 C8 PGW sing 284 n n C7 H7 PGW sing 285 n n C7 H7A PGW sing 286 n n C08 C07 PGW sing 287 n n C08 H08 PGW sing 288 n n C08 H08A PGW sing 289 n n C8 C9 PGW sing 290 n n C8 H8 PGW sing 291 n n C8 H8A PGW sing 292 n n C09 C08 PGW sing 293 n n C09 C11 PGW sing 294 n n C09 H09 PGW sing 295 n n C09 H09A PGW sing 296 n n C9 C10 PGW doub 297 z n C10 C06 PGW sing 298 n n C11 H11 PGW sing 299 n n C11 H11A PGW sing 300 n n O11 C03 PGW sing 301 n n C12 C11 PGW sing 302 n n C12 H12 PGW sing 303 n n C12 H12A PGW sing 304 n n O12 P PGW sing 305 n n C13 C12 PGW sing 306 n n C13 C14 PGW sing 307 n n C13 H13 PGW sing 308 n n C13 H13A PGW sing 309 n n O13 HO13 PGW sing 310 n n C14 H14 PGW sing 311 n n C14 H14A PGW sing 312 n n C14 H14B PGW sing 313 n n O14 P PGW doub 314 n n C15 C16 PGW sing 315 n n C15 H15 PGW sing 316 n n C15 H15A PGW sing 317 n n C16 H16 PGW sing 318 n n C16 H16A PGW sing 319 n n C17 C16 PGW sing 320 n n C17 C18 PGW sing 321 n n C17 H17 PGW sing 322 n n C17 H17A PGW sing 323 n n C18 C28 PGW sing 324 n n C18 H18 PGW sing 325 n n C18 H18A PGW sing 326 n n C19 O03 PGW sing 327 n n C19 C20 PGW sing 328 n n C20 C21 PGW sing 329 n n C20 H20 PGW sing 330 n n C20 H20A PGW sing 331 n n C21 C22 PGW sing 332 n n C21 H21 PGW sing 333 n n C21 H21A PGW sing 334 n n C22 C23 PGW sing 335 n n C22 H22 PGW sing 336 n n C22 H22A PGW sing 337 n n C23 C24 PGW sing 338 n n C23 H23 PGW sing 339 n n C23 H23A PGW sing 340 n n C24 C25 PGW sing 341 n n C24 H24 PGW sing 342 n n C24 H24A PGW sing 343 n n C25 C26 PGW sing 344 n n C25 H25 PGW sing 345 n n C25 H25A PGW sing 346 n n C26 C27 PGW sing 347 n n C26 H26 PGW sing 348 n n C26 H26A PGW sing 349 n n C27 C15 PGW sing 350 n n C27 H27 PGW sing 351 n n C27 H27A PGW sing 352 n n C28 H28 PGW sing 353 n n C28 H28A PGW sing 354 n n C29 H29 PGW sing 355 n n C29 H29A PGW sing 356 n n C29 H29B PGW sing 357 n n C30 C28 PGW sing 358 n n C30 C29 PGW sing 359 n n C30 H30 PGW sing 360 n n C30 H30A PGW sing 361 n n C9 H9 PGW sing 362 n n C10 H10 PGW sing 363 n n # _atom_sites.entry_id 7RXH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 801 801 CA CA . C 2 CA A 1 802 802 CA CA . D 3 PGW A 1 803 901 PGW PGW . E 3 PGW A 1 804 1001 PGW PGW . F 3 PGW A 1 805 1101 PGW PGW . G 3 PGW A 1 806 1201 PGW PGW . H 3 PGW A 1 807 1301 PGW PGW . I 3 PGW A 1 808 1401 PGW PGW . J 3 PGW A 1 809 1501 PGW PGW . K 3 PGW A 1 810 1601 PGW PGW . L 3 PGW A 1 811 1701 PGW PGW . M 3 PGW A 1 812 1801 PGW PGW . N 3 PGW A 1 813 1901 PGW PGW . O 3 PGW A 1 814 3701 PGW PGW . P 3 PGW A 1 815 3801 PGW PGW . Q 3 PGW A 1 816 3901 PGW PGW . R 3 PGW A 1 817 4001 PGW PGW . S 3 PGW A 1 818 4101 PGW PGW . T 4 HOH A 1 2701 2701 HOH HOH . T 4 HOH A 2 2702 3201 HOH HOH . T 4 HOH A 3 2703 2501 HOH HOH . T 4 HOH A 4 2704 4301 HOH HOH . T 4 HOH A 5 2705 3701 HOH HOH . T 4 HOH A 6 2706 2601 HOH HOH . T 4 HOH A 7 2707 2201 HOH HOH . T 4 HOH A 8 2708 3401 HOH HOH . T 4 HOH A 9 2709 3501 HOH HOH . T 4 HOH A 10 2710 3001 HOH HOH . T 4 HOH A 11 2711 2401 HOH HOH . T 4 HOH A 12 2712 2901 HOH HOH . T 4 HOH A 13 2713 3601 HOH HOH . T 4 HOH A 14 2714 2101 HOH HOH . T 4 HOH A 15 2715 2801 HOH HOH . T 4 HOH A 16 2716 2001 HOH HOH . T 4 HOH A 17 2717 4001 HOH HOH . T 4 HOH A 18 2718 4201 HOH HOH . T 4 HOH A 19 2719 3301 HOH HOH . T 4 HOH A 20 2720 3801 HOH HOH . T 4 HOH A 21 2721 3101 HOH HOH . T 4 HOH A 22 2722 3901 HOH HOH . T 4 HOH A 23 2723 2301 HOH HOH . T 4 HOH A 24 2724 4101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . D 3 148.029 130.944 163.664 1 37.89 ? CAD PGW 803 A 1 HETATM 2 O OAE PGW . . . D 3 149.121 130.068 163.564 1 37.89 ? OAE PGW 803 A 1 HETATM 3 O OAF PGW . . . D 3 149.759 132.331 162.778 1 37.89 ? OAF PGW 803 A 1 HETATM 4 P P PGW . . . D 3 147.929 136.028 163.864 1 37.89 ? P PGW 803 A 1 HETATM 5 C C01 PGW . . . D 3 149.014 137.306 160.24 1 37.89 ? C01 PGW 803 A 1 HETATM 6 C C1 PGW . . . D 3 146.38 139.763 159.802 1 37.89 ? C1 PGW 803 A 1 HETATM 7 O O01 PGW . . . D 3 146.971 138.475 159.789 1 37.89 ? O01 PGW 803 A 1 HETATM 8 C C02 PGW . . . D 3 147.979 138.298 160.763 1 37.89 ? C02 PGW 803 A 1 HETATM 9 C C2 PGW . . . D 3 144.849 139.914 159.948 1 37.89 ? C2 PGW 803 A 1 HETATM 10 O O02 PGW . . . D 3 147.06 140.725 159.696 1 37.89 ? O02 PGW 803 A 1 HETATM 11 C C03 PGW . . . D 3 147.355 137.762 162.033 1 37.89 ? C03 PGW 803 A 1 HETATM 12 C C3 PGW . . . D 3 144.176 139.559 158.61 1 37.89 ? C3 PGW 803 A 1 HETATM 13 O O03 PGW . . . D 3 148.779 137.057 158.887 1 37.89 ? O03 PGW 803 A 1 HETATM 14 C C04 PGW . . . D 3 147.911 133.434 163.806 1 37.89 ? C04 PGW 803 A 1 HETATM 15 C C4 PGW . . . D 3 144.856 140.351 157.477 1 37.89 ? C4 PGW 803 A 1 HETATM 16 O O04 PGW . . . D 3 150.762 136.017 158.834 1 37.89 ? O04 PGW 803 A 1 HETATM 17 C C05 PGW . . . D 3 148.374 132.25 162.962 1 37.89 ? C05 PGW 803 A 1 HETATM 18 C C5 PGW . . . D 3 143.844 140.585 156.356 1 37.89 ? C5 PGW 803 A 1 HETATM 19 C C06 PGW . . . D 3 146.04 140.75 149.832 1 37.89 ? C06 PGW 803 A 1 HETATM 20 C C6 PGW . . . D 3 144.527 141.318 155.193 1 37.89 ? C6 PGW 803 A 1 HETATM 21 C C07 PGW . . . D 3 145.496 142.182 149.717 1 37.89 ? C07 PGW 803 A 1 HETATM 22 C C7 PGW . . . D 3 145.38 140.325 154.392 1 37.89 ? C7 PGW 803 A 1 HETATM 23 C C8 PGW . . . D 3 146.525 141.102 153.686 1 37.89 ? C8 PGW 803 A 1 HETATM 24 C C9 PGW . . . D 3 146.148 141.366 152.225 1 37.89 ? C9 PGW 803 A 1 HETATM 25 C C10 PGW . . . D 3 146.425 140.465 151.289 1 37.89 ? C10 PGW 803 A 1 HETATM 26 O O11 PGW . . . D 3 148.332 137.252 162.863 1 37.89 ? O11 PGW 803 A 1 HETATM 27 O O12 PGW . . . D 3 148.23 134.603 163.133 1 37.89 ? O12 PGW 803 A 1 HETATM 28 O O13 PGW . . . D 3 146.458 136.112 164.194 1 37.89 -1 O13 PGW 803 A 1 HETATM 29 O O14 PGW . . . D 3 148.746 136.116 165.125 1 37.89 ? O14 PGW 803 A 1 HETATM 30 C C15 PGW . . . D 3 148.933 136.035 147.789 1 37.89 ? C15 PGW 803 A 1 HETATM 31 C C16 PGW . . . D 3 147.742 136.473 146.966 1 37.89 ? C16 PGW 803 A 1 HETATM 32 C C17 PGW . . . D 3 148.24 137.174 145.73 1 37.89 ? C17 PGW 803 A 1 HETATM 33 C C18 PGW . . . D 3 147.264 136.948 144.601 1 37.89 ? C18 PGW 803 A 1 HETATM 34 C C19 PGW . . . D 3 149.88 136.515 158.217 1 37.89 ? C19 PGW 803 A 1 HETATM 35 C C20 PGW . . . D 3 149.954 136.569 156.694 1 37.89 ? C20 PGW 803 A 1 HETATM 36 C C21 PGW . . . D 3 148.565 136.807 156.128 1 37.89 ? C21 PGW 803 A 1 HETATM 37 C C22 PGW . . . D 3 148.463 136.13 154.768 1 37.89 ? C22 PGW 803 A 1 HETATM 38 C C23 PGW . . . D 3 149 137.075 153.69 1 37.89 ? C23 PGW 803 A 1 HETATM 39 C C24 PGW . . . D 3 148.288 136.777 152.368 1 37.89 ? C24 PGW 803 A 1 HETATM 40 C C25 PGW . . . D 3 149.077 135.694 151.606 1 37.89 ? C25 PGW 803 A 1 HETATM 41 C C26 PGW . . . D 3 149.448 136.227 150.217 1 37.89 ? C26 PGW 803 A 1 HETATM 42 C C27 PGW . . . D 3 148.471 135.646 149.185 1 37.89 ? C27 PGW 803 A 1 HETATM 43 C C28 PGW . . . D 3 147.476 138.009 143.543 1 37.89 ? C28 PGW 803 A 1 HETATM 44 C C29 PGW . . . D 3 149.544 138.258 142.212 1 37.89 ? C29 PGW 803 A 1 HETATM 45 C C30 PGW . . . D 3 148.922 138.474 143.581 1 37.89 ? C30 PGW 803 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #