data_7RXH
#
_model_server_result.job_id            wnKf9FWWHaQAkijY3z-LEA 
_model_server_result.datetime_utc      '2024-11-27 18:37:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":812}' 
#
_entry.id    7RXH 
#
_exptl.entry_id    7RXH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 445 A GLU 445 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc2 A OE1 GLU 445 A GLU 445 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc3 A OD1 ASP 511 A ASP 511 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc4 A OE1 GLU 514 A GLU 514 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc5 A OE2 GLU 514 A GLU 514 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc6 A OE1 GLU 543 A GLU 543 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc7 A OE1 GLU 543 A GLU 543 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc8 A OE2 GLU 543 A GLU 543 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc9 A OD1 ASP 547 A ASP 547 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc10 A OD2 ASP 547 A ASP 547 1_555 B CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
metalc ? metalc11 B CA CA . A CA 801 1_555 T O HOH . A HOH 2719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc12 C CA CA . A CA 802 1_555 T O HOH . A HOH 2710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 237 n n 
CAD HAD PGW sing 238 n n 
CAD HADA PGW sing 239 n n 
OAE CAD PGW sing 240 n n 
OAE HOAE PGW sing 241 n n 
OAF C05 PGW sing 242 n n 
OAF HOAF PGW sing 243 n n 
P O13 PGW sing 244 n n 
P O11 PGW sing 245 n n 
C01 O03 PGW sing 246 n n 
C01 C02 PGW sing 247 n n 
C01 H01 PGW sing 248 n n 
C01 H01A PGW sing 249 n n 
C1 C2 PGW sing 250 n n 
O01 C1 PGW sing 251 n n 
C02 O01 PGW sing 252 n n 
C02 H02 PGW sing 253 n n 
C2 C3 PGW sing 254 n n 
C2 H2 PGW sing 255 n n 
C2 H2A PGW sing 256 n n 
O02 C1 PGW doub 257 n n 
C03 C02 PGW sing 258 n n 
C03 H03 PGW sing 259 n n 
C03 H03A PGW sing 260 n n 
C3 C4 PGW sing 261 n n 
C3 H3 PGW sing 262 n n 
C3 H3A PGW sing 263 n n 
C04 C05 PGW sing 264 n n 
C04 O12 PGW sing 265 n n 
C04 H04 PGW sing 266 n n 
C04 H04A PGW sing 267 n n 
C4 C5 PGW sing 268 n n 
C4 H4 PGW sing 269 n n 
C4 H4A PGW sing 270 n n 
O04 C19 PGW doub 271 n n 
C05 H05 PGW sing 272 n n 
C5 C6 PGW sing 273 n n 
C5 H5 PGW sing 274 n n 
C5 H5A PGW sing 275 n n 
C06 C07 PGW sing 276 n n 
C06 H06 PGW sing 277 n n 
C06 H06A PGW sing 278 n n 
C6 C7 PGW sing 279 n n 
C6 H6 PGW sing 280 n n 
C6 H6A PGW sing 281 n n 
C07 H07 PGW sing 282 n n 
C07 H07A PGW sing 283 n n 
C7 C8 PGW sing 284 n n 
C7 H7 PGW sing 285 n n 
C7 H7A PGW sing 286 n n 
C08 C07 PGW sing 287 n n 
C08 H08 PGW sing 288 n n 
C08 H08A PGW sing 289 n n 
C8 C9 PGW sing 290 n n 
C8 H8 PGW sing 291 n n 
C8 H8A PGW sing 292 n n 
C09 C08 PGW sing 293 n n 
C09 C11 PGW sing 294 n n 
C09 H09 PGW sing 295 n n 
C09 H09A PGW sing 296 n n 
C9 C10 PGW doub 297 z n 
C10 C06 PGW sing 298 n n 
C11 H11 PGW sing 299 n n 
C11 H11A PGW sing 300 n n 
O11 C03 PGW sing 301 n n 
C12 C11 PGW sing 302 n n 
C12 H12 PGW sing 303 n n 
C12 H12A PGW sing 304 n n 
O12 P PGW sing 305 n n 
C13 C12 PGW sing 306 n n 
C13 C14 PGW sing 307 n n 
C13 H13 PGW sing 308 n n 
C13 H13A PGW sing 309 n n 
O13 HO13 PGW sing 310 n n 
C14 H14 PGW sing 311 n n 
C14 H14A PGW sing 312 n n 
C14 H14B PGW sing 313 n n 
O14 P PGW doub 314 n n 
C15 C16 PGW sing 315 n n 
C15 H15 PGW sing 316 n n 
C15 H15A PGW sing 317 n n 
C16 H16 PGW sing 318 n n 
C16 H16A PGW sing 319 n n 
C17 C16 PGW sing 320 n n 
C17 C18 PGW sing 321 n n 
C17 H17 PGW sing 322 n n 
C17 H17A PGW sing 323 n n 
C18 C28 PGW sing 324 n n 
C18 H18 PGW sing 325 n n 
C18 H18A PGW sing 326 n n 
C19 O03 PGW sing 327 n n 
C19 C20 PGW sing 328 n n 
C20 C21 PGW sing 329 n n 
C20 H20 PGW sing 330 n n 
C20 H20A PGW sing 331 n n 
C21 C22 PGW sing 332 n n 
C21 H21 PGW sing 333 n n 
C21 H21A PGW sing 334 n n 
C22 C23 PGW sing 335 n n 
C22 H22 PGW sing 336 n n 
C22 H22A PGW sing 337 n n 
C23 C24 PGW sing 338 n n 
C23 H23 PGW sing 339 n n 
C23 H23A PGW sing 340 n n 
C24 C25 PGW sing 341 n n 
C24 H24 PGW sing 342 n n 
C24 H24A PGW sing 343 n n 
C25 C26 PGW sing 344 n n 
C25 H25 PGW sing 345 n n 
C25 H25A PGW sing 346 n n 
C26 C27 PGW sing 347 n n 
C26 H26 PGW sing 348 n n 
C26 H26A PGW sing 349 n n 
C27 C15 PGW sing 350 n n 
C27 H27 PGW sing 351 n n 
C27 H27A PGW sing 352 n n 
C28 H28 PGW sing 353 n n 
C28 H28A PGW sing 354 n n 
C29 H29 PGW sing 355 n n 
C29 H29A PGW sing 356 n n 
C29 H29B PGW sing 357 n n 
C30 C28 PGW sing 358 n n 
C30 C29 PGW sing 359 n n 
C30 H30 PGW sing 360 n n 
C30 H30A PGW sing 361 n n 
C9 H9 PGW sing 362 n n 
C10 H10 PGW sing 363 n n 
#
_atom_sites.entry_id                     7RXH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 801 801 CA CA . 
C 2 CA A 1 802 802 CA CA . 
D 3 PGW A 1 803 901 PGW PGW . 
E 3 PGW A 1 804 1001 PGW PGW . 
F 3 PGW A 1 805 1101 PGW PGW . 
G 3 PGW A 1 806 1201 PGW PGW . 
H 3 PGW A 1 807 1301 PGW PGW . 
I 3 PGW A 1 808 1401 PGW PGW . 
J 3 PGW A 1 809 1501 PGW PGW . 
K 3 PGW A 1 810 1601 PGW PGW . 
L 3 PGW A 1 811 1701 PGW PGW . 
M 3 PGW A 1 812 1801 PGW PGW . 
N 3 PGW A 1 813 1901 PGW PGW . 
O 3 PGW A 1 814 3701 PGW PGW . 
P 3 PGW A 1 815 3801 PGW PGW . 
Q 3 PGW A 1 816 3901 PGW PGW . 
R 3 PGW A 1 817 4001 PGW PGW . 
S 3 PGW A 1 818 4101 PGW PGW . 
T 4 HOH A 1 2701 2701 HOH HOH . 
T 4 HOH A 2 2702 3201 HOH HOH . 
T 4 HOH A 3 2703 2501 HOH HOH . 
T 4 HOH A 4 2704 4301 HOH HOH . 
T 4 HOH A 5 2705 3701 HOH HOH . 
T 4 HOH A 6 2706 2601 HOH HOH . 
T 4 HOH A 7 2707 2201 HOH HOH . 
T 4 HOH A 8 2708 3401 HOH HOH . 
T 4 HOH A 9 2709 3501 HOH HOH . 
T 4 HOH A 10 2710 3001 HOH HOH . 
T 4 HOH A 11 2711 2401 HOH HOH . 
T 4 HOH A 12 2712 2901 HOH HOH . 
T 4 HOH A 13 2713 3601 HOH HOH . 
T 4 HOH A 14 2714 2101 HOH HOH . 
T 4 HOH A 15 2715 2801 HOH HOH . 
T 4 HOH A 16 2716 2001 HOH HOH . 
T 4 HOH A 17 2717 4001 HOH HOH . 
T 4 HOH A 18 2718 4201 HOH HOH . 
T 4 HOH A 19 2719 3301 HOH HOH . 
T 4 HOH A 20 2720 3801 HOH HOH . 
T 4 HOH A 21 2721 3101 HOH HOH . 
T 4 HOH A 22 2722 3901 HOH HOH . 
T 4 HOH A 23 2723 2301 HOH HOH . 
T 4 HOH A 24 2724 4101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PGW . . . M 3 118.777 105.616 128.333 1 47.35 ? P PGW 812 A 1 
HETATM 2 C C01 PGW . . . M 3 118.746 107.06 131.62 1 47.35 ? C01 PGW 812 A 1 
HETATM 3 C C1 PGW . . . M 3 121.657 108.046 132.836 1 47.35 ? C1 PGW 812 A 1 
HETATM 4 O O01 PGW . . . M 3 121.016 106.867 132.385 1 47.35 ? O01 PGW 812 A 1 
HETATM 5 C C02 PGW . . . M 3 120.223 107.065 131.236 1 47.35 ? C02 PGW 812 A 1 
HETATM 6 C C2 PGW . . . M 3 123.099 107.985 133.386 1 47.35 ? C2 PGW 812 A 1 
HETATM 7 O O02 PGW . . . M 3 121.082 109.076 132.79 1 47.35 ? O02 PGW 812 A 1 
HETATM 8 C C03 PGW . . . M 3 120.492 105.955 130.243 1 47.35 ? C03 PGW 812 A 1 
HETATM 9 C C3 PGW . . . M 3 123.078 107.944 134.926 1 47.35 ? C3 PGW 812 A 1 
HETATM 10 O O03 PGW . . . M 3 118.207 108.328 131.4 1 47.35 ? O03 PGW 812 A 1 
HETATM 11 C C4 PGW . . . M 3 123.301 109.362 135.485 1 47.35 ? C4 PGW 812 A 1 
HETATM 12 O O04 PGW . . . M 3 116.013 108.536 131.808 1 47.35 ? O04 PGW 812 A 1 
HETATM 13 C C5 PGW . . . M 3 124.048 109.274 136.819 1 47.35 ? C5 PGW 812 A 1 
HETATM 14 C C06 PGW . . . M 3 122.976 111.12 143.181 1 47.35 ? C06 PGW 812 A 1 
HETATM 15 C C6 PGW . . . M 3 123.744 110.524 137.661 1 47.35 ? C6 PGW 812 A 1 
HETATM 16 C C7 PGW . . . M 3 124.248 110.316 139.097 1 47.35 ? C7 PGW 812 A 1 
HETATM 17 C C8 PGW . . . M 3 123.403 109.212 139.794 1 47.35 ? C8 PGW 812 A 1 
HETATM 18 C C9 PGW . . . M 3 123.293 109.531 141.29 1 47.35 ? C9 PGW 812 A 1 
HETATM 19 C C10 PGW . . . M 3 123.089 110.784 141.684 1 47.35 ? C10 PGW 812 A 1 
HETATM 20 O O11 PGW . . . M 3 120.066 106.362 128.996 1 47.35 ? O11 PGW 812 A 1 
HETATM 21 O O12 PGW . . . M 3 119.084 104.016 128.205 1 47.35 ? O12 PGW 812 A 1 
HETATM 22 O O13 PGW . . . M 3 118.519 106.189 126.96 1 47.35 -1 O13 PGW 812 A 1 
HETATM 23 O O14 PGW . . . M 3 117.569 105.828 129.205 1 47.35 ? O14 PGW 812 A 1 
HETATM 24 C C19 PGW . . . M 3 117.12 108.639 132.222 1 47.35 ? C19 PGW 812 A 1 
HETATM 25 C C20 PGW . . . M 3 117.367 109.099 133.658 1 47.35 ? C20 PGW 812 A 1 
HETATM 26 C C21 PGW . . . M 3 117.03 110.579 133.8 1 47.35 ? C21 PGW 812 A 1 
HETATM 27 C C22 PGW . . . M 3 116.632 110.866 135.244 1 47.35 ? C22 PGW 812 A 1 
HETATM 28 C C23 PGW . . . M 3 115.623 112.021 135.279 1 47.35 ? C23 PGW 812 A 1 
HETATM 29 C C24 PGW . . . M 3 115.595 112.643 136.682 1 47.35 ? C24 PGW 812 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           29 
#