data_7RXS # _model_server_result.job_id U1MA7H77TdE54B-WDczWCQ _model_server_result.datetime_utc '2024-10-19 03:47:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7RXS # _exptl.entry_id 7RXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.463 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(3S)-3-{5-[2-(3,5-dimethylphenoxy)pyrimidin-4-yl]-4-(4-iodophenyl)-1H-imidazol-1-yl}pyrrolidin-1-yl]ethan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RXS _cell.length_a 30.193 _cell.length_b 41.446 _cell.length_c 110.199 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H29 I N6 O' _chem_comp.formula_weight 580.463 _chem_comp.id 7ZT _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(3S)-3-{5-[2-(3,5-dimethylphenoxy)pyrimidin-4-yl]-4-(4-iodophenyl)-1H-imidazol-1-yl}pyrrolidin-1-yl]ethan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C04 7ZT sing 1 n n C01 C02 7ZT sing 2 n n C03 C04 7ZT doub 3 n y C03 C02 7ZT sing 4 n y C04 C06 7ZT sing 5 n y C02 C35 7ZT doub 6 n y C06 C07 7ZT doub 7 n y C35 C07 7ZT sing 8 n y C07 O08 7ZT sing 9 n n C30 C31 7ZT sing 10 n n C30 N26 7ZT sing 11 n n O08 C09 7ZT sing 12 n n C28 C27 7ZT sing 13 n n C28 N29 7ZT sing 14 n n C31 C24 7ZT sing 15 n n C27 N26 7ZT sing 16 n n N26 C25 7ZT sing 17 n n C09 N10 7ZT doub 18 n y C09 N34 7ZT sing 19 n y C24 C25 7ZT sing 20 n n C24 N23 7ZT sing 21 n n N10 C11 7ZT sing 22 n y N34 C33 7ZT doub 23 n y N23 C22 7ZT sing 24 n y N23 C12 7ZT sing 25 n y C11 C12 7ZT sing 26 n n C11 C32 7ZT doub 27 n y C22 N21 7ZT doub 28 n y C12 C13 7ZT doub 29 n y C33 C32 7ZT sing 30 n y N21 C13 7ZT sing 31 n y C13 C14 7ZT sing 32 n n C20 C14 7ZT doub 33 n y C20 C19 7ZT sing 34 n y C14 C15 7ZT sing 35 n y C19 C17 7ZT doub 36 n y C15 C16 7ZT doub 37 n y C17 C16 7ZT sing 38 n y C17 I18 7ZT sing 39 n n C01 H1 7ZT sing 40 n n C01 H2 7ZT sing 41 n n C01 H3 7ZT sing 42 n n C03 H4 7ZT sing 43 n n C05 H5 7ZT sing 44 n n C05 H6 7ZT sing 45 n n C05 H7 7ZT sing 46 n n C06 H8 7ZT sing 47 n n C15 H9 7ZT sing 48 n n C16 H10 7ZT sing 49 n n C19 H11 7ZT sing 50 n n C20 H12 7ZT sing 51 n n C22 H13 7ZT sing 52 n n C24 H14 7ZT sing 53 n n C25 H15 7ZT sing 54 n n C25 H16 7ZT sing 55 n n C27 H17 7ZT sing 56 n n C27 H18 7ZT sing 57 n n C28 H19 7ZT sing 58 n n C28 H20 7ZT sing 59 n n C30 H21 7ZT sing 60 n n C30 H22 7ZT sing 61 n n C31 H23 7ZT sing 62 n n C31 H24 7ZT sing 63 n n C32 H25 7ZT sing 64 n n C33 H26 7ZT sing 65 n n C35 H27 7ZT sing 66 n n N29 H29 7ZT sing 67 n n N29 H30 7ZT sing 68 n n # _atom_sites.entry_id 7RXS _atom_sites.fract_transf_matrix[1][1] 0.03312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 170 EDO EDO . C 3 7ZT A 1 202 201 7ZT Z1S . D 4 HOH A 1 301 82 HOH HOH . D 4 HOH A 2 302 101 HOH HOH . D 4 HOH A 3 303 105 HOH HOH . D 4 HOH A 4 304 132 HOH HOH . D 4 HOH A 5 305 47 HOH HOH . D 4 HOH A 6 306 120 HOH HOH . D 4 HOH A 7 307 121 HOH HOH . D 4 HOH A 8 308 119 HOH HOH . D 4 HOH A 9 309 56 HOH HOH . D 4 HOH A 10 310 85 HOH HOH . D 4 HOH A 11 311 99 HOH HOH . D 4 HOH A 12 312 29 HOH HOH . D 4 HOH A 13 313 68 HOH HOH . D 4 HOH A 14 314 63 HOH HOH . D 4 HOH A 15 315 7 HOH HOH . D 4 HOH A 16 316 97 HOH HOH . D 4 HOH A 17 317 18 HOH HOH . D 4 HOH A 18 318 17 HOH HOH . D 4 HOH A 19 319 43 HOH HOH . D 4 HOH A 20 320 59 HOH HOH . D 4 HOH A 21 321 127 HOH HOH . D 4 HOH A 22 322 52 HOH HOH . D 4 HOH A 23 323 30 HOH HOH . D 4 HOH A 24 324 1 HOH HOH . D 4 HOH A 25 325 4 HOH HOH . D 4 HOH A 26 326 24 HOH HOH . D 4 HOH A 27 327 9 HOH HOH . D 4 HOH A 28 328 72 HOH HOH . D 4 HOH A 29 329 15 HOH HOH . D 4 HOH A 30 330 89 HOH HOH . D 4 HOH A 31 331 38 HOH HOH . D 4 HOH A 32 332 34 HOH HOH . D 4 HOH A 33 333 117 HOH HOH . D 4 HOH A 34 334 104 HOH HOH . D 4 HOH A 35 335 28 HOH HOH . D 4 HOH A 36 336 20 HOH HOH . D 4 HOH A 37 337 53 HOH HOH . D 4 HOH A 38 338 2 HOH HOH . D 4 HOH A 39 339 51 HOH HOH . D 4 HOH A 40 340 39 HOH HOH . D 4 HOH A 41 341 58 HOH HOH . D 4 HOH A 42 342 57 HOH HOH . D 4 HOH A 43 343 6 HOH HOH . D 4 HOH A 44 344 44 HOH HOH . D 4 HOH A 45 345 48 HOH HOH . D 4 HOH A 46 346 13 HOH HOH . D 4 HOH A 47 347 27 HOH HOH . D 4 HOH A 48 348 31 HOH HOH . D 4 HOH A 49 349 42 HOH HOH . D 4 HOH A 50 350 50 HOH HOH . D 4 HOH A 51 351 41 HOH HOH . D 4 HOH A 52 352 36 HOH HOH . D 4 HOH A 53 353 33 HOH HOH . D 4 HOH A 54 354 96 HOH HOH . D 4 HOH A 55 355 8 HOH HOH . D 4 HOH A 56 356 11 HOH HOH . D 4 HOH A 57 357 90 HOH HOH . D 4 HOH A 58 358 66 HOH HOH . D 4 HOH A 59 359 10 HOH HOH . D 4 HOH A 60 360 116 HOH HOH . D 4 HOH A 61 361 12 HOH HOH . D 4 HOH A 62 362 32 HOH HOH . D 4 HOH A 63 363 77 HOH HOH . D 4 HOH A 64 364 122 HOH HOH . D 4 HOH A 65 365 110 HOH HOH . D 4 HOH A 66 366 16 HOH HOH . D 4 HOH A 67 367 21 HOH HOH . D 4 HOH A 68 368 3 HOH HOH . D 4 HOH A 69 369 74 HOH HOH . D 4 HOH A 70 370 107 HOH HOH . D 4 HOH A 71 371 69 HOH HOH . D 4 HOH A 72 372 67 HOH HOH . D 4 HOH A 73 373 87 HOH HOH . D 4 HOH A 74 374 37 HOH HOH . D 4 HOH A 75 375 35 HOH HOH . D 4 HOH A 76 376 25 HOH HOH . D 4 HOH A 77 377 14 HOH HOH . D 4 HOH A 78 378 49 HOH HOH . D 4 HOH A 79 379 23 HOH HOH . D 4 HOH A 80 380 98 HOH HOH . D 4 HOH A 81 381 115 HOH HOH . D 4 HOH A 82 382 71 HOH HOH . D 4 HOH A 83 383 111 HOH HOH . D 4 HOH A 84 384 84 HOH HOH . D 4 HOH A 85 385 61 HOH HOH . D 4 HOH A 86 386 45 HOH HOH . D 4 HOH A 87 387 100 HOH HOH . D 4 HOH A 88 388 128 HOH HOH . D 4 HOH A 89 389 112 HOH HOH . D 4 HOH A 90 390 113 HOH HOH . D 4 HOH A 91 391 19 HOH HOH . D 4 HOH A 92 392 103 HOH HOH . D 4 HOH A 93 393 22 HOH HOH . D 4 HOH A 94 394 86 HOH HOH . D 4 HOH A 95 395 106 HOH HOH . D 4 HOH A 96 396 70 HOH HOH . D 4 HOH A 97 397 73 HOH HOH . D 4 HOH A 98 398 102 HOH HOH . D 4 HOH A 99 399 134 HOH HOH . D 4 HOH A 100 400 118 HOH HOH . D 4 HOH A 101 401 46 HOH HOH . D 4 HOH A 102 402 76 HOH HOH . D 4 HOH A 103 403 126 HOH HOH . D 4 HOH A 104 404 133 HOH HOH . D 4 HOH A 105 405 65 HOH HOH . D 4 HOH A 106 406 78 HOH HOH . D 4 HOH A 107 407 108 HOH HOH . D 4 HOH A 108 408 94 HOH HOH . D 4 HOH A 109 409 91 HOH HOH . D 4 HOH A 110 410 95 HOH HOH . D 4 HOH A 111 411 125 HOH HOH . D 4 HOH A 112 412 81 HOH HOH . D 4 HOH A 113 413 131 HOH HOH . D 4 HOH A 114 414 26 HOH HOH . D 4 HOH A 115 415 5 HOH HOH . D 4 HOH A 116 416 130 HOH HOH . D 4 HOH A 117 417 79 HOH HOH . D 4 HOH A 118 418 54 HOH HOH . D 4 HOH A 119 419 83 HOH HOH . D 4 HOH A 120 420 80 HOH HOH . D 4 HOH A 121 421 55 HOH HOH . D 4 HOH A 122 422 114 HOH HOH . D 4 HOH A 123 423 60 HOH HOH . D 4 HOH A 124 424 40 HOH HOH . D 4 HOH A 125 425 75 HOH HOH . D 4 HOH A 126 426 62 HOH HOH . D 4 HOH A 127 427 124 HOH HOH . D 4 HOH A 128 428 109 HOH HOH . D 4 HOH A 129 429 64 HOH HOH . D 4 HOH A 130 430 135 HOH HOH . D 4 HOH A 131 431 88 HOH HOH . D 4 HOH A 132 432 93 HOH HOH . D 4 HOH A 133 433 129 HOH HOH . D 4 HOH A 134 434 92 HOH HOH . D 4 HOH A 135 435 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 7ZT . . . C 3 5.209 21.998 1.2 1 19.94 ? C01 7ZT 202 A 1 HETATM 2 C C02 7ZT . . . C 3 5.699 23.386 1.658 1 18.95 ? C02 7ZT 202 A 1 HETATM 3 C C03 7ZT . . . C 3 5.056 24.523 1.201 1 20.79 ? C03 7ZT 202 A 1 HETATM 4 C C04 7ZT . . . C 3 5.498 25.79 1.618 1 19.88 ? C04 7ZT 202 A 1 HETATM 5 C C05 7ZT . . . C 3 4.78 27.078 1.112 1 23.43 ? C05 7ZT 202 A 1 HETATM 6 C C06 7ZT . . . C 3 6.568 25.897 2.485 1 20.48 ? C06 7ZT 202 A 1 HETATM 7 C C07 7ZT . . . C 3 7.21 24.753 2.948 1 20.09 ? C07 7ZT 202 A 1 HETATM 8 C C09 7ZT . . . C 3 8.03 24.715 5.2 1 20.74 ? C09 7ZT 202 A 1 HETATM 9 C C11 7ZT . . . C 3 6.53 24.214 6.867 1 19.15 ? C11 7ZT 202 A 1 HETATM 10 C C12 7ZT . . . C 3 5.087 23.806 7.246 1 18.01 ? C12 7ZT 202 A 1 HETATM 11 C C13 7ZT . . . C 3 4.679 22.931 8.26 1 17.85 ? C13 7ZT 202 A 1 HETATM 12 C C14 7ZT . . . C 3 5.561 22.207 9.298 1 16.63 ? C14 7ZT 202 A 1 HETATM 13 C C15 7ZT . . . C 3 5.106 22.151 10.574 1 17.54 ? C15 7ZT 202 A 1 HETATM 14 C C16 7ZT . . . C 3 5.861 21.519 11.542 1 18.12 ? C16 7ZT 202 A 1 HETATM 15 C C17 7ZT . . . C 3 7.078 20.948 11.202 1 16.34 ? C17 7ZT 202 A 1 HETATM 16 C C19 7ZT . . . C 3 7.546 21.004 9.92 1 15.02 ? C19 7ZT 202 A 1 HETATM 17 C C20 7ZT . . . C 3 6.765 21.635 8.96 1 16.63 ? C20 7ZT 202 A 1 HETATM 18 C C22 7ZT . . . C 3 2.938 23.623 7.236 1 19.77 ? C22 7ZT 202 A 1 HETATM 19 C C24 7ZT . . . C 3 3.893 25.152 5.401 1 19.76 ? C24 7ZT 202 A 1 HETATM 20 C C25 7ZT . . . C 3 2.787 26.237 5.683 1 22.55 ? C25 7ZT 202 A 1 HETATM 21 C C27 7ZT . . . C 3 0.982 26.775 4.527 1 24.56 ? C27 7ZT 202 A 1 HETATM 22 C C28 7ZT . . . C 3 -0.439 26.376 4.052 1 29.09 ? C28 7ZT 202 A 1 HETATM 23 C C30 7ZT . . . C 3 2.219 25.323 3.769 1 22.4 ? C30 7ZT 202 A 1 HETATM 24 C C31 7ZT . . . C 3 3.531 24.533 4.355 1 22.07 ? C31 7ZT 202 A 1 HETATM 25 C C32 7ZT . . . C 3 7.541 24.434 7.833 1 18.62 ? C32 7ZT 202 A 1 HETATM 26 C C33 7ZT . . . C 3 8.814 24.787 7.39 1 20.96 ? C33 7ZT 202 A 1 HETATM 27 C C35 7ZT . . . C 3 6.776 23.488 2.527 1 20.06 ? C35 7ZT 202 A 1 HETATM 28 I I18 7ZT . . . C 3 8.24 20.013 12.714 0.83 18.1 ? I18 7ZT 202 A 1 HETATM 29 N N10 7ZT . . . C 3 6.824 24.369 5.579 0.84 17.38 ? N10 7ZT 202 A 1 HETATM 30 N N21 7ZT . . . C 3 3.353 22.877 8.246 1 17.43 ? N21 7ZT 202 A 1 HETATM 31 N N23 7ZT . . . C 3 3.98 24.18 6.628 1 18.76 ? N23 7ZT 202 A 1 HETATM 32 N N26 7ZT . . . C 3 1.626 25.815 4.819 1 22.77 ? N26 7ZT 202 A 1 HETATM 33 N N29 7ZT . . . C 3 -0.965 25.297 4.872 1 32.1 ? N29 7ZT 202 A 1 HETATM 34 N N34 7ZT . . . C 3 9.017 24.925 6.089 1 21.07 ? N34 7ZT 202 A 1 HETATM 35 O O08 7ZT . . . C 3 8.338 24.884 3.822 1 21.43 ? O08 7ZT 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #