data_7RY0 # _model_server_result.job_id Ma8PYgcb9I7xtyDHjSVldw _model_server_result.datetime_utc '2024-10-10 07:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ry0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 7RY0 # _exptl.entry_id 7RY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RY0 _cell.length_a 38.898 _cell.length_b 154.26 _cell.length_c 156.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7RY0 _atom_sites.fract_transf_matrix[1][1] 0.025708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 801 1 DMS DMS . D 2 DMS A 1 802 3 DMS DMS . E 2 DMS B 1 801 2 DMS DMS . F 3 GOL B 1 802 4 GOL GOL . G 3 GOL B 1 803 5 GOL GOL . H 4 HOH A 1 901 26 HOH HOH . H 4 HOH A 2 902 37 HOH HOH . H 4 HOH A 3 903 31 HOH HOH . H 4 HOH A 4 904 131 HOH HOH . H 4 HOH A 5 905 75 HOH HOH . H 4 HOH A 6 906 30 HOH HOH . H 4 HOH A 7 907 105 HOH HOH . H 4 HOH A 8 908 127 HOH HOH . H 4 HOH A 9 909 48 HOH HOH . H 4 HOH A 10 910 49 HOH HOH . H 4 HOH A 11 911 113 HOH HOH . H 4 HOH A 12 912 8 HOH HOH . H 4 HOH A 13 913 40 HOH HOH . H 4 HOH A 14 914 13 HOH HOH . H 4 HOH A 15 915 58 HOH HOH . H 4 HOH A 16 916 42 HOH HOH . H 4 HOH A 17 917 4 HOH HOH . H 4 HOH A 18 918 108 HOH HOH . H 4 HOH A 19 919 24 HOH HOH . H 4 HOH A 20 920 118 HOH HOH . H 4 HOH A 21 921 116 HOH HOH . H 4 HOH A 22 922 122 HOH HOH . H 4 HOH A 23 923 3 HOH HOH . H 4 HOH A 24 924 7 HOH HOH . H 4 HOH A 25 925 16 HOH HOH . H 4 HOH A 26 926 120 HOH HOH . H 4 HOH A 27 927 126 HOH HOH . H 4 HOH A 28 928 1 HOH HOH . H 4 HOH A 29 929 135 HOH HOH . H 4 HOH A 30 930 78 HOH HOH . H 4 HOH A 31 931 32 HOH HOH . H 4 HOH A 32 932 34 HOH HOH . H 4 HOH A 33 933 17 HOH HOH . H 4 HOH A 34 934 138 HOH HOH . H 4 HOH A 35 935 89 HOH HOH . H 4 HOH A 36 936 68 HOH HOH . H 4 HOH A 37 937 128 HOH HOH . H 4 HOH A 38 938 52 HOH HOH . H 4 HOH A 39 939 23 HOH HOH . H 4 HOH A 40 940 18 HOH HOH . H 4 HOH A 41 941 92 HOH HOH . H 4 HOH A 42 942 59 HOH HOH . H 4 HOH A 43 943 67 HOH HOH . H 4 HOH A 44 944 54 HOH HOH . H 4 HOH A 45 945 99 HOH HOH . H 4 HOH A 46 946 86 HOH HOH . H 4 HOH A 47 947 104 HOH HOH . H 4 HOH A 48 948 111 HOH HOH . H 4 HOH A 49 949 112 HOH HOH . I 4 HOH B 1 901 119 HOH HOH . I 4 HOH B 2 902 97 HOH HOH . I 4 HOH B 3 903 22 HOH HOH . I 4 HOH B 4 904 15 HOH HOH . I 4 HOH B 5 905 71 HOH HOH . I 4 HOH B 6 906 66 HOH HOH . I 4 HOH B 7 907 57 HOH HOH . I 4 HOH B 8 908 114 HOH HOH . I 4 HOH B 9 909 21 HOH HOH . I 4 HOH B 10 910 50 HOH HOH . I 4 HOH B 11 911 28 HOH HOH . I 4 HOH B 12 912 14 HOH HOH . I 4 HOH B 13 913 5 HOH HOH . I 4 HOH B 14 914 46 HOH HOH . I 4 HOH B 15 915 6 HOH HOH . I 4 HOH B 16 916 29 HOH HOH . I 4 HOH B 17 917 73 HOH HOH . I 4 HOH B 18 918 81 HOH HOH . I 4 HOH B 19 919 11 HOH HOH . I 4 HOH B 20 920 9 HOH HOH . I 4 HOH B 21 921 39 HOH HOH . I 4 HOH B 22 922 41 HOH HOH . I 4 HOH B 23 923 69 HOH HOH . I 4 HOH B 24 924 64 HOH HOH . I 4 HOH B 25 925 25 HOH HOH . I 4 HOH B 26 926 55 HOH HOH . I 4 HOH B 27 927 130 HOH HOH . I 4 HOH B 28 928 60 HOH HOH . I 4 HOH B 29 929 70 HOH HOH . I 4 HOH B 30 930 47 HOH HOH . I 4 HOH B 31 931 93 HOH HOH . I 4 HOH B 32 932 136 HOH HOH . I 4 HOH B 33 933 124 HOH HOH . I 4 HOH B 34 934 19 HOH HOH . I 4 HOH B 35 935 20 HOH HOH . I 4 HOH B 36 936 117 HOH HOH . I 4 HOH B 37 937 83 HOH HOH . I 4 HOH B 38 938 82 HOH HOH . I 4 HOH B 39 939 133 HOH HOH . I 4 HOH B 40 940 53 HOH HOH . I 4 HOH B 41 941 88 HOH HOH . I 4 HOH B 42 942 125 HOH HOH . I 4 HOH B 43 943 63 HOH HOH . I 4 HOH B 44 944 91 HOH HOH . I 4 HOH B 45 945 129 HOH HOH . I 4 HOH B 46 946 44 HOH HOH . I 4 HOH B 47 947 45 HOH HOH . I 4 HOH B 48 948 115 HOH HOH . I 4 HOH B 49 949 65 HOH HOH . I 4 HOH B 50 950 35 HOH HOH . I 4 HOH B 51 951 12 HOH HOH . I 4 HOH B 52 952 100 HOH HOH . I 4 HOH B 53 953 87 HOH HOH . I 4 HOH B 54 954 27 HOH HOH . I 4 HOH B 55 955 38 HOH HOH . I 4 HOH B 56 956 121 HOH HOH . I 4 HOH B 57 957 84 HOH HOH . I 4 HOH B 58 958 77 HOH HOH . I 4 HOH B 59 959 33 HOH HOH . I 4 HOH B 60 960 43 HOH HOH . I 4 HOH B 61 961 132 HOH HOH . I 4 HOH B 62 962 94 HOH HOH . I 4 HOH B 63 963 85 HOH HOH . I 4 HOH B 64 964 36 HOH HOH . I 4 HOH B 65 965 76 HOH HOH . I 4 HOH B 66 966 74 HOH HOH . I 4 HOH B 67 967 80 HOH HOH . I 4 HOH B 68 968 72 HOH HOH . I 4 HOH B 69 969 110 HOH HOH . I 4 HOH B 70 970 61 HOH HOH . I 4 HOH B 71 971 2 HOH HOH . I 4 HOH B 72 972 10 HOH HOH . I 4 HOH B 73 973 98 HOH HOH . I 4 HOH B 74 974 62 HOH HOH . I 4 HOH B 75 975 51 HOH HOH . I 4 HOH B 76 976 123 HOH HOH . I 4 HOH B 77 977 134 HOH HOH . I 4 HOH B 78 978 95 HOH HOH . I 4 HOH B 79 979 106 HOH HOH . I 4 HOH B 80 980 96 HOH HOH . I 4 HOH B 81 981 137 HOH HOH . I 4 HOH B 82 982 107 HOH HOH . I 4 HOH B 83 983 56 HOH HOH . I 4 HOH B 84 984 90 HOH HOH . I 4 HOH B 85 985 101 HOH HOH . I 4 HOH B 86 986 103 HOH HOH . I 4 HOH B 87 987 102 HOH HOH . I 4 HOH B 88 988 79 HOH HOH . I 4 HOH B 89 989 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 40.275 153.582 11.855 1 99 ? S DMS 802 A 1 HETATM 2 O O DMS . . . D 2 39.773 153.897 10.492 1 98.83 ? O DMS 802 A 1 HETATM 3 C C1 DMS . . . D 2 40.462 155.13 12.724 1 106.36 ? C1 DMS 802 A 1 HETATM 4 C C2 DMS . . . D 2 39.117 153.033 13.12 1 102.77 ? C2 DMS 802 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #