data_7RY1
#
_model_server_result.job_id            9udWzQHUzmsB5nS5kb3nZw 
_model_server_result.datetime_utc      '2024-11-17 20:29:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ry1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    7RY1 
#
_exptl.entry_id    7RY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              383.398 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[2-(1-MALEIMIDYL)ETHYL]-7-DIETHYLAMINOCOUMARIN-3-CARBOXAMIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RY1 
_cell.length_a            159.85 
_cell.length_b            311.964 
_cell.length_c            88.15 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E 1 1 
C,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 44.075 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 85 A CYS 374 1_555 D C2 MDC . A MDC 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
covale ? covale2 B SG CYS 85 B CYS 374 1_555 E C1 MDC . B MDC 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
covale ? covale3 C SG CYS 85 C CYS 374 1_555 F C2 MDC . C MDC 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? 
covale ? covale4 C SG CYS 85 C CYS 374 1_555 F C1 MDC . C MDC 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? 
#
_chem_comp.formula           'C20 H21 N3 O5' 
_chem_comp.formula_weight    383.398 
_chem_comp.id                MDC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[2-(1-MALEIMIDYL)ETHYL]-7-DIETHYLAMINOCOUMARIN-3-CARBOXAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MDC sing 216 n n 
C1 C5 MDC sing 217 n n 
C1 H11 MDC sing 218 n n 
C1 H12 MDC sing 219 n n 
C2 C3 MDC sing 220 n n 
C2 H21 MDC sing 221 n n 
C2 H22 MDC sing 222 n n 
C3 O3 MDC doub 223 n n 
C3 N4 MDC sing 224 n n 
N4 C5 MDC sing 225 n n 
N4 C6 MDC sing 226 n n 
C5 O5 MDC doub 227 n n 
C6 C7 MDC doub 228 z n 
C6 H6 MDC sing 229 n n 
C7 N8 MDC sing 230 n n 
C7 H7 MDC sing 231 n n 
N8 C9 MDC sing 232 n n 
N8 HN8 MDC sing 233 n n 
C9 O9 MDC doub 234 n n 
C9 C13 MDC sing 235 n n 
O11 C12 MDC sing 236 n y 
O11 C28 MDC sing 237 n y 
C12 O12 MDC doub 238 n n 
C12 C13 MDC sing 239 n y 
C13 C14 MDC doub 240 n y 
C14 C24 MDC sing 241 n y 
C14 H14 MDC sing 242 n n 
C24 C28 MDC doub 243 n y 
C24 C15 MDC sing 244 n y 
C28 C18 MDC sing 245 n y 
C15 C16 MDC doub 246 n y 
C15 H15 MDC sing 247 n n 
C16 C17 MDC sing 248 n y 
C16 H16 MDC sing 249 n n 
C17 N17 MDC sing 250 n n 
C17 C18 MDC doub 251 n y 
N17 C19 MDC sing 252 n n 
N17 C21 MDC sing 253 n n 
C18 H18 MDC sing 254 n n 
C19 C20 MDC sing 255 n n 
C19 H191 MDC sing 256 n n 
C19 H192 MDC sing 257 n n 
C20 H201 MDC sing 258 n n 
C20 H202 MDC sing 259 n n 
C20 H203 MDC sing 260 n n 
C21 C22 MDC sing 261 n n 
C21 H211 MDC sing 262 n n 
C21 H212 MDC sing 263 n n 
C22 H221 MDC sing 264 n n 
C22 H222 MDC sing 265 n n 
C22 H223 MDC sing 266 n n 
#
_atom_sites.entry_id                     7RY1 
_atom_sites.fract_transf_matrix[1][1]    0.006256 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003205 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011344 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MDC A 1 801 1 MDC MDC . 
E 2 MDC B 1 801 2 MDC MDC . 
F 2 MDC C 1 801 3 MDC MDC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MDC . . . D 2 -9.672 -35.81 14.786 1 193.14 ? C1 MDC 801 A 1 
HETATM 2 C C2 MDC . . . D 2 -10.161 -34.585 14.364 1 187.55 ? C2 MDC 801 A 1 
HETATM 3 C C3 MDC . . . D 2 -11.205 -34.307 15.234 1 194.01 ? C3 MDC 801 A 1 
HETATM 4 O O3 MDC . . . D 2 -12.001 -33.179 15.167 1 200.74 ? O3 MDC 801 A 1 
HETATM 5 N N4 MDC . . . D 2 -11.37 -35.275 16.104 1 195.56 ? N4 MDC 801 A 1 
HETATM 6 C C5 MDC . . . D 2 -10.454 -36.201 15.865 1 200.55 ? C5 MDC 801 A 1 
HETATM 7 O O5 MDC . . . D 2 -10.296 -37.389 16.575 1 207.14 ? O5 MDC 801 A 1 
HETATM 8 C C6 MDC . . . D 2 -12.38 -35.307 17.174 1 194.69 ? C6 MDC 801 A 1 
HETATM 9 C C7 MDC . . . D 2 -12.026 -35.429 18.455 1 190.04 ? C7 MDC 801 A 1 
HETATM 10 N N8 MDC . . . D 2 -10.602 -35.549 18.689 1 181.3 ? N8 MDC 801 A 1 
HETATM 11 C C9 MDC . . . D 2 -9.837 -34.348 18.444 1 173.78 ? C9 MDC 801 A 1 
HETATM 12 O O9 MDC . . . D 2 -10.385 -33.359 18.103 1 169.48 ? O9 MDC 801 A 1 
HETATM 13 O O11 MDC . . . D 2 -6.464 -33.382 19.636 1 178.48 ? O11 MDC 801 A 1 
HETATM 14 C C12 MDC . . . D 2 -7.757 -33.489 19.551 1 177.18 ? C12 MDC 801 A 1 
HETATM 15 O O12 MDC . . . D 2 -8.585 -32.831 20.473 1 180.27 ? O12 MDC 801 A 1 
HETATM 16 C C13 MDC . . . D 2 -8.332 -34.268 18.56 1 173.69 ? C13 MDC 801 A 1 
HETATM 17 C C14 MDC . . . D 2 -7.501 -34.931 17.602 1 172.39 ? C14 MDC 801 A 1 
HETATM 18 C C24 MDC . . . D 2 -6.06 -34.765 17.759 1 173.95 ? C24 MDC 801 A 1 
HETATM 19 C C28 MDC . . . D 2 -5.621 -33.988 18.783 1 175.57 ? C28 MDC 801 A 1 
HETATM 20 C C15 MDC . . . D 2 -5.103 -35.375 16.896 1 173.71 ? C15 MDC 801 A 1 
HETATM 21 C C16 MDC . . . D 2 -3.735 -35.181 17.1 1 170.52 ? C16 MDC 801 A 1 
HETATM 22 C C17 MDC . . . D 2 -3.311 -34.371 18.166 1 169.94 ? C17 MDC 801 A 1 
HETATM 23 N N17 MDC . . . D 2 -1.934 -34.059 18.513 1 169.04 ? N17 MDC 801 A 1 
HETATM 24 C C18 MDC . . . D 2 -4.236 -33.785 18.995 1 172.28 ? C18 MDC 801 A 1 
HETATM 25 C C19 MDC . . . D 2 -1.535 -34.239 19.896 1 170.45 ? C19 MDC 801 A 1 
HETATM 26 C C20 MDC . . . D 2 -0.806 -35.549 20.152 1 170.66 ? C20 MDC 801 A 1 
HETATM 27 C C21 MDC . . . D 2 -1.004 -33.467 17.565 1 164.9 ? C21 MDC 801 A 1 
HETATM 28 C C22 MDC . . . D 2 -1.687 -32.669 16.461 1 162.2 ? C22 MDC 801 A 1 
#
_model_server_stats.io_time_ms              86 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           420 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           28 
#