data_7RY8
#
_model_server_result.job_id            FunP9F4atKrcuT1GWjAqPA 
_model_server_result.datetime_utc      '2024-10-12 23:25:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ry8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    7RY8 
#
_exptl.entry_id    7RY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.278 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.509 
_cell.angle_gamma         90 
_cell.entry_id            7RY8 
_cell.length_a            77.79 
_cell.length_b            66.863 
_cell.length_c            80.878 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N8 VOR . A VOR 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
#
_chem_comp.formula           'C10 H22 O6' 
_chem_comp.formula_weight    238.278 
_chem_comp.id                1PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PEG400 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH2 C12 1PE sing 1 n n 
OH2 HO2 1PE sing 2 n n 
C12 C22 1PE sing 3 n n 
C12 H121 1PE sing 4 n n 
C12 H122 1PE sing 5 n n 
C22 OH3 1PE sing 6 n n 
C22 H221 1PE sing 7 n n 
C22 H222 1PE sing 8 n n 
OH3 C23 1PE sing 9 n n 
C13 C23 1PE sing 10 n n 
C13 OH4 1PE sing 11 n n 
C13 H131 1PE sing 12 n n 
C13 H132 1PE sing 13 n n 
C23 H231 1PE sing 14 n n 
C23 H232 1PE sing 15 n n 
OH4 C24 1PE sing 16 n n 
C14 C24 1PE sing 17 n n 
C14 OH5 1PE sing 18 n n 
C14 H141 1PE sing 19 n n 
C14 H142 1PE sing 20 n n 
C24 H241 1PE sing 21 n n 
C24 H242 1PE sing 22 n n 
OH5 C25 1PE sing 23 n n 
C15 C25 1PE sing 24 n n 
C15 OH6 1PE sing 25 n n 
C15 H151 1PE sing 26 n n 
C15 H152 1PE sing 27 n n 
C25 H251 1PE sing 28 n n 
C25 H252 1PE sing 29 n n 
OH6 C26 1PE sing 30 n n 
C16 C26 1PE sing 31 n n 
C16 OH7 1PE sing 32 n n 
C16 H161 1PE sing 33 n n 
C16 H162 1PE sing 34 n n 
C26 H261 1PE sing 35 n n 
C26 H262 1PE sing 36 n n 
OH7 HO7 1PE sing 37 n n 
#
_atom_sites.entry_id                     7RY8 
_atom_sites.fract_transf_matrix[1][1]    0.012855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001923 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014956 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 VOR A 1 602 2 VOR VOR . 
D 4 BGC A 1 603 1 BGC BGC . 
E 5 1PE A 1 604 604 1PE 1PE . 
F 6 HOH A 1 701 55 HOH HOH . 
F 6 HOH A 2 702 258 HOH HOH . 
F 6 HOH A 3 703 98 HOH HOH . 
F 6 HOH A 4 704 6 HOH HOH . 
F 6 HOH A 5 705 189 HOH HOH . 
F 6 HOH A 6 706 67 HOH HOH . 
F 6 HOH A 7 707 29 HOH HOH . 
F 6 HOH A 8 708 284 HOH HOH . 
F 6 HOH A 9 709 27 HOH HOH . 
F 6 HOH A 10 710 118 HOH HOH . 
F 6 HOH A 11 711 203 HOH HOH . 
F 6 HOH A 12 712 281 HOH HOH . 
F 6 HOH A 13 713 185 HOH HOH . 
F 6 HOH A 14 714 12 HOH HOH . 
F 6 HOH A 15 715 20 HOH HOH . 
F 6 HOH A 16 716 270 HOH HOH . 
F 6 HOH A 17 717 21 HOH HOH . 
F 6 HOH A 18 718 196 HOH HOH . 
F 6 HOH A 19 719 60 HOH HOH . 
F 6 HOH A 20 720 85 HOH HOH . 
F 6 HOH A 21 721 257 HOH HOH . 
F 6 HOH A 22 722 17 HOH HOH . 
F 6 HOH A 23 723 245 HOH HOH . 
F 6 HOH A 24 724 309 HOH HOH . 
F 6 HOH A 25 725 46 HOH HOH . 
F 6 HOH A 26 726 49 HOH HOH . 
F 6 HOH A 27 727 33 HOH HOH . 
F 6 HOH A 28 728 86 HOH HOH . 
F 6 HOH A 29 729 288 HOH HOH . 
F 6 HOH A 30 730 51 HOH HOH . 
F 6 HOH A 31 731 232 HOH HOH . 
F 6 HOH A 32 732 10 HOH HOH . 
F 6 HOH A 33 733 255 HOH HOH . 
F 6 HOH A 34 734 30 HOH HOH . 
F 6 HOH A 35 735 87 HOH HOH . 
F 6 HOH A 36 736 38 HOH HOH . 
F 6 HOH A 37 737 266 HOH HOH . 
F 6 HOH A 38 738 173 HOH HOH . 
F 6 HOH A 39 739 233 HOH HOH . 
F 6 HOH A 40 740 254 HOH HOH . 
F 6 HOH A 41 741 32 HOH HOH . 
F 6 HOH A 42 742 18 HOH HOH . 
F 6 HOH A 43 743 22 HOH HOH . 
F 6 HOH A 44 744 177 HOH HOH . 
F 6 HOH A 45 745 92 HOH HOH . 
F 6 HOH A 46 746 201 HOH HOH . 
F 6 HOH A 47 747 31 HOH HOH . 
F 6 HOH A 48 748 2 HOH HOH . 
F 6 HOH A 49 749 217 HOH HOH . 
F 6 HOH A 50 750 13 HOH HOH . 
F 6 HOH A 51 751 301 HOH HOH . 
F 6 HOH A 52 752 178 HOH HOH . 
F 6 HOH A 53 753 25 HOH HOH . 
F 6 HOH A 54 754 134 HOH HOH . 
F 6 HOH A 55 755 290 HOH HOH . 
F 6 HOH A 56 756 11 HOH HOH . 
F 6 HOH A 57 757 195 HOH HOH . 
F 6 HOH A 58 758 39 HOH HOH . 
F 6 HOH A 59 759 218 HOH HOH . 
F 6 HOH A 60 760 84 HOH HOH . 
F 6 HOH A 61 761 19 HOH HOH . 
F 6 HOH A 62 762 316 HOH HOH . 
F 6 HOH A 63 763 78 HOH HOH . 
F 6 HOH A 64 764 225 HOH HOH . 
F 6 HOH A 65 765 53 HOH HOH . 
F 6 HOH A 66 766 210 HOH HOH . 
F 6 HOH A 67 767 63 HOH HOH . 
F 6 HOH A 68 768 229 HOH HOH . 
F 6 HOH A 69 769 58 HOH HOH . 
F 6 HOH A 70 770 181 HOH HOH . 
F 6 HOH A 71 771 7 HOH HOH . 
F 6 HOH A 72 772 238 HOH HOH . 
F 6 HOH A 73 773 24 HOH HOH . 
F 6 HOH A 74 774 298 HOH HOH . 
F 6 HOH A 75 775 26 HOH HOH . 
F 6 HOH A 76 776 15 HOH HOH . 
F 6 HOH A 77 777 70 HOH HOH . 
F 6 HOH A 78 778 16 HOH HOH . 
F 6 HOH A 79 779 28 HOH HOH . 
F 6 HOH A 80 780 234 HOH HOH . 
F 6 HOH A 81 781 100 HOH HOH . 
F 6 HOH A 82 782 34 HOH HOH . 
F 6 HOH A 83 783 9 HOH HOH . 
F 6 HOH A 84 784 35 HOH HOH . 
F 6 HOH A 85 785 283 HOH HOH . 
F 6 HOH A 86 786 79 HOH HOH . 
F 6 HOH A 87 787 256 HOH HOH . 
F 6 HOH A 88 788 57 HOH HOH . 
F 6 HOH A 89 789 8 HOH HOH . 
F 6 HOH A 90 790 209 HOH HOH . 
F 6 HOH A 91 791 224 HOH HOH . 
F 6 HOH A 92 792 223 HOH HOH . 
F 6 HOH A 93 793 253 HOH HOH . 
F 6 HOH A 94 794 23 HOH HOH . 
F 6 HOH A 95 795 219 HOH HOH . 
F 6 HOH A 96 796 107 HOH HOH . 
F 6 HOH A 97 797 222 HOH HOH . 
F 6 HOH A 98 798 36 HOH HOH . 
F 6 HOH A 99 799 272 HOH HOH . 
F 6 HOH A 100 800 174 HOH HOH . 
F 6 HOH A 101 801 129 HOH HOH . 
F 6 HOH A 102 802 156 HOH HOH . 
F 6 HOH A 103 803 236 HOH HOH . 
F 6 HOH A 104 804 278 HOH HOH . 
F 6 HOH A 105 805 37 HOH HOH . 
F 6 HOH A 106 806 263 HOH HOH . 
F 6 HOH A 107 807 48 HOH HOH . 
F 6 HOH A 108 808 246 HOH HOH . 
F 6 HOH A 109 809 286 HOH HOH . 
F 6 HOH A 110 810 128 HOH HOH . 
F 6 HOH A 111 811 274 HOH HOH . 
F 6 HOH A 112 812 317 HOH HOH . 
F 6 HOH A 113 813 133 HOH HOH . 
F 6 HOH A 114 814 297 HOH HOH . 
F 6 HOH A 115 815 261 HOH HOH . 
F 6 HOH A 116 816 212 HOH HOH . 
F 6 HOH A 117 817 108 HOH HOH . 
F 6 HOH A 118 818 239 HOH HOH . 
F 6 HOH A 119 819 205 HOH HOH . 
F 6 HOH A 120 820 303 HOH HOH . 
F 6 HOH A 121 821 264 HOH HOH . 
F 6 HOH A 122 822 269 HOH HOH . 
F 6 HOH A 123 823 271 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH2 1PE . . . E 5 29.348 28.586 -2.866 1 61.86 ? OH2 1PE 604 A 1 
HETATM 2 C C12 1PE . . . E 5 28.884 27.655 -3.861 1 60.66 ? C12 1PE 604 A 1 
HETATM 3 C C22 1PE . . . E 5 29.784 26.433 -3.876 1 61.22 ? C22 1PE 604 A 1 
HETATM 4 O OH3 1PE . . . E 5 31.192 26.715 -3.981 1 59.97 ? OH3 1PE 604 A 1 
HETATM 5 C C13 1PE . . . E 5 33.152 25.365 -3.635 1 61.08 ? C13 1PE 604 A 1 
HETATM 6 C C23 1PE . . . E 5 31.913 25.595 -4.494 1 60.06 ? C23 1PE 604 A 1 
HETATM 7 O OH4 1PE . . . E 5 33.771 26.632 -3.405 1 68.27 ? OH4 1PE 604 A 1 
HETATM 8 C C14 1PE . . . E 5 35.816 27.792 -2.64 1 66.17 ? C14 1PE 604 A 1 
HETATM 9 C C24 1PE . . . E 5 35.096 26.463 -2.906 1 64.97 ? C24 1PE 604 A 1 
HETATM 10 O OH5 1PE . . . E 5 35.052 28.655 -1.794 1 68.3 ? OH5 1PE 604 A 1 
HETATM 11 C C15 1PE . . . E 5 34.846 30.722 -0.537 1 61.64 ? C15 1PE 604 A 1 
HETATM 12 C C25 1PE . . . E 5 35.793 29.772 -1.278 1 63.35 ? C25 1PE 604 A 1 
HETATM 13 O OH6 1PE . . . E 5 33.751 31.092 -1.391 1 70.55 ? OH6 1PE 604 A 1 
HETATM 14 C C16 1PE . . . E 5 31.707 32.441 -1.803 1 65.12 ? C16 1PE 604 A 1 
HETATM 15 C C26 1PE . . . E 5 32.74 31.923 -0.793 1 66.1 ? C26 1PE 604 A 1 
HETATM 16 O OH7 1PE . . . E 5 30.648 31.507 -2.085 1 70.41 ? OH7 1PE 604 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           395 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#