data_7RY9
#
_model_server_result.job_id            ELQCU0HE5Wvbpb2h2lOdBg 
_model_server_result.datetime_utc      '2024-10-12 21:24:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ry9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    7RY9 
#
_exptl.entry_id    7RY9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              349.31 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Voriconazole 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.14 
_cell.angle_gamma         90 
_cell.entry_id            7RY9 
_cell.length_a            76.79 
_cell.length_b            66.31 
_cell.length_c            80.73 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N8 VOR . A VOR 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
#
_chem_comp.formula           'C16 H14 F3 N5 O' 
_chem_comp.formula_weight    349.31 
_chem_comp.id                VOR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Voriconazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (2R,3S)-2-(2,4-difluorophenyl)-3-(5-fluoropyrimidin-4-yl)-1-(1H-1,2,4-triazol-1-yl)butan-2-ol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 C16 VOR sing 488 n n 
F2 C18 VOR sing 489 n n 
F3 C22 VOR sing 490 n n 
O4 C10 VOR sing 491 n n 
N5 N7 VOR sing 492 n y 
N5 C12 VOR sing 493 n n 
N5 C21 VOR sing 494 n y 
N6 C15 VOR doub 495 n y 
N6 C24 VOR sing 496 n y 
N7 C25 VOR doub 497 n y 
N8 C21 VOR doub 498 n y 
N8 C25 VOR sing 499 n y 
N9 C23 VOR sing 500 n y 
N9 C24 VOR doub 501 n y 
C10 C11 VOR sing 502 n n 
C10 C12 VOR sing 503 n n 
C10 C13 VOR sing 504 n n 
C11 C14 VOR sing 505 n n 
C11 C15 VOR sing 506 n n 
C13 C16 VOR doub 507 n y 
C13 C17 VOR sing 508 n y 
C15 C18 VOR sing 509 n y 
C16 C19 VOR sing 510 n y 
C17 C20 VOR doub 511 n y 
C18 C23 VOR doub 512 n y 
C19 C22 VOR doub 513 n y 
C20 C22 VOR sing 514 n y 
O4 HO4 VOR sing 515 n n 
C11 H11 VOR sing 516 n n 
C12 H12 VOR sing 517 n n 
C12 H12A VOR sing 518 n n 
C14 H14 VOR sing 519 n n 
C14 H14A VOR sing 520 n n 
C14 H14B VOR sing 521 n n 
C17 H17 VOR sing 522 n n 
C19 H19 VOR sing 523 n n 
C20 H20 VOR sing 524 n n 
C21 H21 VOR sing 525 n n 
C23 H23 VOR sing 526 n n 
C24 H24 VOR sing 527 n n 
C25 H25 VOR sing 528 n n 
#
_atom_sites.entry_id                     7RY9 
_atom_sites.fract_transf_matrix[1][1]    0.013023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001863 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015081 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 VOR A 1 602 602 VOR VOR . 
D 4 PG4 A 1 603 1 PG4 PG4 . 
E 5 HOH A 1 701 6 HOH HOH . 
E 5 HOH A 2 702 4 HOH HOH . 
E 5 HOH A 3 703 7 HOH HOH . 
E 5 HOH A 4 704 2 HOH HOH . 
E 5 HOH A 5 705 10 HOH HOH . 
E 5 HOH A 6 706 8 HOH HOH . 
E 5 HOH A 7 707 9 HOH HOH . 
E 5 HOH A 8 708 51 HOH HOH . 
E 5 HOH A 9 709 43 HOH HOH . 
E 5 HOH A 10 710 39 HOH HOH . 
E 5 HOH A 11 711 49 HOH HOH . 
E 5 HOH A 12 712 20 HOH HOH . 
E 5 HOH A 13 713 60 HOH HOH . 
E 5 HOH A 14 714 47 HOH HOH . 
E 5 HOH A 15 715 33 HOH HOH . 
E 5 HOH A 16 716 35 HOH HOH . 
E 5 HOH A 17 717 102 HOH HOH . 
E 5 HOH A 18 718 21 HOH HOH . 
E 5 HOH A 19 719 37 HOH HOH . 
E 5 HOH A 20 720 40 HOH HOH . 
E 5 HOH A 21 721 93 HOH HOH . 
E 5 HOH A 22 722 32 HOH HOH . 
E 5 HOH A 23 723 57 HOH HOH . 
E 5 HOH A 24 724 13 HOH HOH . 
E 5 HOH A 25 725 56 HOH HOH . 
E 5 HOH A 26 726 55 HOH HOH . 
E 5 HOH A 27 727 5 HOH HOH . 
E 5 HOH A 28 728 18 HOH HOH . 
E 5 HOH A 29 729 25 HOH HOH . 
E 5 HOH A 30 730 38 HOH HOH . 
E 5 HOH A 31 731 27 HOH HOH . 
E 5 HOH A 32 732 44 HOH HOH . 
E 5 HOH A 33 733 19 HOH HOH . 
E 5 HOH A 34 734 45 HOH HOH . 
E 5 HOH A 35 735 48 HOH HOH . 
E 5 HOH A 36 736 17 HOH HOH . 
E 5 HOH A 37 737 71 HOH HOH . 
E 5 HOH A 38 738 65 HOH HOH . 
E 5 HOH A 39 739 16 HOH HOH . 
E 5 HOH A 40 740 95 HOH HOH . 
E 5 HOH A 41 741 78 HOH HOH . 
E 5 HOH A 42 742 68 HOH HOH . 
E 5 HOH A 43 743 59 HOH HOH . 
E 5 HOH A 44 744 3 HOH HOH . 
E 5 HOH A 45 745 54 HOH HOH . 
E 5 HOH A 46 746 22 HOH HOH . 
E 5 HOH A 47 747 36 HOH HOH . 
E 5 HOH A 48 748 87 HOH HOH . 
E 5 HOH A 49 749 99 HOH HOH . 
E 5 HOH A 50 750 104 HOH HOH . 
E 5 HOH A 51 751 14 HOH HOH . 
E 5 HOH A 52 752 24 HOH HOH . 
E 5 HOH A 53 753 64 HOH HOH . 
E 5 HOH A 54 754 101 HOH HOH . 
E 5 HOH A 55 755 46 HOH HOH . 
E 5 HOH A 56 756 103 HOH HOH . 
E 5 HOH A 57 757 31 HOH HOH . 
E 5 HOH A 58 758 62 HOH HOH . 
E 5 HOH A 59 759 50 HOH HOH . 
E 5 HOH A 60 760 41 HOH HOH . 
E 5 HOH A 61 761 63 HOH HOH . 
E 5 HOH A 62 762 91 HOH HOH . 
E 5 HOH A 63 763 73 HOH HOH . 
E 5 HOH A 64 764 66 HOH HOH . 
E 5 HOH A 65 765 1 HOH HOH . 
E 5 HOH A 66 766 70 HOH HOH . 
E 5 HOH A 67 767 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F1 VOR . . . C 3 22.178 12.221 14.447 1 29.31 ? F1 VOR 602 A 1 
HETATM 2 F F2 VOR . . . C 3 20.261 8.114 18.139 1 45.7 ? F2 VOR 602 A 1 
HETATM 3 F F3 VOR . . . C 3 26.016 10.48 12.485 1 33.46 ? F3 VOR 602 A 1 
HETATM 4 O O4 VOR . . . C 3 22.627 9.311 17.556 1 29.29 ? O4 VOR 602 A 1 
HETATM 5 N N5 VOR . . . C 3 23.819 11.914 17.747 1 30.13 ? N5 VOR 602 A 1 
HETATM 6 N N6 VOR . . . C 3 19.255 11.533 17.649 1 30.98 ? N6 VOR 602 A 1 
HETATM 7 N N7 VOR . . . C 3 24.475 12.98 17.201 1 30.18 ? N7 VOR 602 A 1 
HETATM 8 N N8 VOR . . . C 3 25.829 11.802 18.519 1 28.83 ? N8 VOR 602 A 1 
HETATM 9 N N9 VOR . . . C 3 18.159 10.647 19.583 1 38.32 ? N9 VOR 602 A 1 
HETATM 10 C C10 VOR . . . C 3 22.249 10.375 16.681 1 31.26 ? C10 VOR 602 A 1 
HETATM 11 C C11 VOR . . . C 3 20.777 10.282 16.238 1 32.95 ? C11 VOR 602 A 1 
HETATM 12 C C12 VOR . . . C 3 22.426 11.691 17.442 1 24.71 ? C12 VOR 602 A 1 
HETATM 13 C C13 VOR . . . C 3 23.251 10.421 15.529 1 31.23 ? C13 VOR 602 A 1 
HETATM 14 C C14 VOR . . . C 3 20.498 9.044 15.381 1 31.2 ? C14 VOR 602 A 1 
HETATM 15 C C15 VOR . . . C 3 19.85 10.349 17.439 1 30.25 ? C15 VOR 602 A 1 
HETATM 16 C C16 VOR . . . C 3 23.186 11.322 14.481 1 29.95 ? C16 VOR 602 A 1 
HETATM 17 C C17 VOR . . . C 3 24.327 9.54 15.514 1 28.11 ? C17 VOR 602 A 1 
HETATM 18 C C18 VOR . . . C 3 19.644 9.301 18.315 1 35.23 ? C18 VOR 602 A 1 
HETATM 19 C C19 VOR . . . C 3 24.08 11.383 13.439 1 29.98 ? C19 VOR 602 A 1 
HETATM 20 C C20 VOR . . . C 3 25.26 9.558 14.488 1 31.46 ? C20 VOR 602 A 1 
HETATM 21 C C21 VOR . . . C 3 24.65 11.218 18.521 1 26.11 ? C21 VOR 602 A 1 
HETATM 22 C C22 VOR . . . C 3 25.101 10.47 13.482 1 30.52 ? C22 VOR 602 A 1 
HETATM 23 C C23 VOR . . . C 3 18.776 9.485 19.375 1 33.04 ? C23 VOR 602 A 1 
HETATM 24 C C24 VOR . . . C 3 18.442 11.604 18.706 1 36.45 ? C24 VOR 602 A 1 
HETATM 25 C C25 VOR . . . C 3 25.671 12.871 17.719 1 25.9 ? C25 VOR 602 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#