data_7RYB # _model_server_result.job_id swu0HiRNurcUxnDvGrFbpQ _model_server_result.datetime_utc '2024-11-30 03:48:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ryb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7RYB # _exptl.entry_id 7RYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.31 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Voriconazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.79 _cell.angle_gamma 90 _cell.entry_id 7RYB _cell.length_a 79.18 _cell.length_b 67.3 _cell.length_c 81.33 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N8 VOR . A VOR 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C16 H14 F3 N5 O' _chem_comp.formula_weight 349.31 _chem_comp.id VOR _chem_comp.mon_nstd_flag . _chem_comp.name Voriconazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2R,3S)-2-(2,4-difluorophenyl)-3-(5-fluoropyrimidin-4-yl)-1-(1H-1,2,4-triazol-1-yl)butan-2-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C16 VOR sing 458 n n F2 C18 VOR sing 459 n n F3 C22 VOR sing 460 n n O4 C10 VOR sing 461 n n N5 N7 VOR sing 462 n y N5 C12 VOR sing 463 n n N5 C21 VOR sing 464 n y N6 C15 VOR doub 465 n y N6 C24 VOR sing 466 n y N7 C25 VOR doub 467 n y N8 C21 VOR doub 468 n y N8 C25 VOR sing 469 n y N9 C23 VOR sing 470 n y N9 C24 VOR doub 471 n y C10 C11 VOR sing 472 n n C10 C12 VOR sing 473 n n C10 C13 VOR sing 474 n n C11 C14 VOR sing 475 n n C11 C15 VOR sing 476 n n C13 C16 VOR doub 477 n y C13 C17 VOR sing 478 n y C15 C18 VOR sing 479 n y C16 C19 VOR sing 480 n y C17 C20 VOR doub 481 n y C18 C23 VOR doub 482 n y C19 C22 VOR doub 483 n y C20 C22 VOR sing 484 n y O4 HO4 VOR sing 485 n n C11 H11 VOR sing 486 n n C12 H12 VOR sing 487 n n C12 H12A VOR sing 488 n n C14 H14 VOR sing 489 n n C14 H14A VOR sing 490 n n C14 H14B VOR sing 491 n n C17 H17 VOR sing 492 n n C19 H19 VOR sing 493 n n C20 H20 VOR sing 494 n n C21 H21 VOR sing 495 n n C23 H23 VOR sing 496 n n C24 H24 VOR sing 497 n n C25 H25 VOR sing 498 n n # _atom_sites.entry_id 7RYB _atom_sites.fract_transf_matrix[1][1] 0.012629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002179 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 VOR A 1 602 602 VOR VOR . D 4 HOH A 1 701 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 VOR . . . C 3 23.065 12.816 14.33 1 44.73 ? F1 VOR 602 A 1 HETATM 2 F F2 VOR . . . C 3 20.795 8.354 17.368 1 55.69 ? F2 VOR 602 A 1 HETATM 3 F F3 VOR . . . C 3 26.841 11.37 12.046 1 43.72 ? F3 VOR 602 A 1 HETATM 4 O O4 VOR . . . C 3 23.458 9.434 16.888 1 47.54 ? O4 VOR 602 A 1 HETATM 5 N N5 VOR . . . C 3 24.395 12.289 17.474 1 44.44 ? N5 VOR 602 A 1 HETATM 6 N N6 VOR . . . C 3 19.968 11.846 16.855 1 47.15 ? N6 VOR 602 A 1 HETATM 7 N N7 VOR . . . C 3 24.788 13.459 16.888 1 47.76 ? N7 VOR 602 A 1 HETATM 8 N N8 VOR . . . C 3 26.449 12.62 18.117 1 42.53 ? N8 VOR 602 A 1 HETATM 9 N N9 VOR . . . C 3 18.643 10.928 18.612 1 53.99 ? N9 VOR 602 A 1 HETATM 10 C C10 VOR . . . C 3 23.089 10.629 16.203 1 45.55 ? C10 VOR 602 A 1 HETATM 11 C C11 VOR . . . C 3 21.649 10.599 15.62 1 45.92 ? C11 VOR 602 A 1 HETATM 12 C C12 VOR . . . C 3 23.061 11.766 17.24 1 39.12 ? C12 VOR 602 A 1 HETATM 13 C C13 VOR . . . C 3 24.104 10.854 15.079 1 44.21 ? C13 VOR 602 A 1 HETATM 14 C C14 VOR . . . C 3 21.471 9.428 14.631 1 46.19 ? C14 VOR 602 A 1 HETATM 15 C C15 VOR . . . C 3 20.572 10.66 16.694 1 45.15 ? C15 VOR 602 A 1 HETATM 16 C C16 VOR . . . C 3 24.049 11.907 14.193 1 41.18 ? C16 VOR 602 A 1 HETATM 17 C C17 VOR . . . C 3 25.141 9.953 14.876 1 44.78 ? C17 VOR 602 A 1 HETATM 18 C C18 VOR . . . C 3 20.218 9.573 17.492 1 46.79 ? C18 VOR 602 A 1 HETATM 19 C C19 VOR . . . C 3 24.941 12.111 13.175 1 40.62 ? C19 VOR 602 A 1 HETATM 20 C C20 VOR . . . C 3 26.069 10.122 13.862 1 42.86 ? C20 VOR 602 A 1 HETATM 21 C C21 VOR . . . C 3 25.421 11.794 18.211 1 43.32 ? C21 VOR 602 A 1 HETATM 22 C C22 VOR . . . C 3 25.937 11.193 13.039 1 42.57 ? C22 VOR 602 A 1 HETATM 23 C C23 VOR . . . C 3 19.238 9.752 18.445 1 45.75 ? C23 VOR 602 A 1 HETATM 24 C C24 VOR . . . C 3 19.039 11.9 17.803 1 55.2 ? C24 VOR 602 A 1 HETATM 25 C C25 VOR . . . C 3 26.022 13.611 17.307 1 42.21 ? C25 VOR 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #