data_7RYD # _model_server_result.job_id QmFdgv0CmEQ8nTCDj-exFQ _model_server_result.datetime_utc '2024-11-28 01:21:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ryd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 7RYD # _exptl.entry_id 7RYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.21 _cell.angle_gamma 90 _cell.entry_id 7RYD _cell.length_a 27.64 _cell.length_b 62.45 _cell.length_c 59.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,O 1 1 B,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 6 BBB CYS 6 1_555 B SG CYS 127 BBB CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 B SG CYS 30 BBB CYS 30 1_555 B SG CYS 115 BBB CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 B SG CYS 64 BBB CYS 64 1_555 B SG CYS 80 BBB CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf8 B SG CYS 76 BBB CYS 76 1_555 B SG CYS 94 BBB CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 7RYD _atom_sites.fract_transf_matrix[1][1] 0.036179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NO3 AAA 1 401 401 NO3 NO3 . D 2 NO3 AAA 1 402 501 NO3 NO3 . E 2 NO3 AAA 1 403 601 NO3 NO3 . F 2 NO3 AAA 1 404 801 NO3 NO3 . G 2 NO3 AAA 1 405 1201 NO3 NO3 . H 2 NO3 AAA 1 406 1401 NO3 NO3 . I 2 NO3 AAA 1 407 1501 NO3 NO3 . J 2 NO3 AAA 1 408 301 NO3 NO3 . K 2 NO3 BBB 1 301 301 NO3 NO3 . L 2 NO3 BBB 1 302 501 NO3 NO3 . M 2 NO3 BBB 1 303 601 NO3 NO3 . N 2 NO3 BBB 1 304 701 NO3 NO3 . O 3 HOH AAA 1 501 32 HOH HOH . O 3 HOH AAA 2 502 128 HOH HOH . O 3 HOH AAA 3 503 114 HOH HOH . O 3 HOH AAA 4 504 97 HOH HOH . O 3 HOH AAA 5 505 175 HOH HOH . O 3 HOH AAA 6 506 69 HOH HOH . O 3 HOH AAA 7 507 54 HOH HOH . O 3 HOH AAA 8 508 140 HOH HOH . O 3 HOH AAA 9 509 70 HOH HOH . O 3 HOH AAA 10 510 8 HOH HOH . O 3 HOH AAA 11 511 42 HOH HOH . O 3 HOH AAA 12 512 40 HOH HOH . O 3 HOH AAA 13 513 41 HOH HOH . O 3 HOH AAA 14 514 199 HOH HOH . O 3 HOH AAA 15 515 106 HOH HOH . O 3 HOH AAA 16 516 123 HOH HOH . O 3 HOH AAA 17 517 33 HOH HOH . O 3 HOH AAA 18 518 57 HOH HOH . O 3 HOH AAA 19 519 58 HOH HOH . O 3 HOH AAA 20 520 192 HOH HOH . O 3 HOH AAA 21 521 206 HOH HOH . O 3 HOH AAA 22 522 208 HOH HOH . O 3 HOH AAA 23 523 73 HOH HOH . O 3 HOH AAA 24 524 47 HOH HOH . O 3 HOH AAA 25 525 165 HOH HOH . O 3 HOH AAA 26 526 53 HOH HOH . O 3 HOH AAA 27 527 90 HOH HOH . O 3 HOH AAA 28 528 23 HOH HOH . O 3 HOH AAA 29 529 24 HOH HOH . O 3 HOH AAA 30 530 121 HOH HOH . O 3 HOH AAA 31 531 110 HOH HOH . O 3 HOH AAA 32 532 13 HOH HOH . O 3 HOH AAA 33 533 61 HOH HOH . O 3 HOH AAA 34 534 52 HOH HOH . O 3 HOH AAA 35 535 80 HOH HOH . O 3 HOH AAA 36 536 22 HOH HOH . O 3 HOH AAA 37 537 21 HOH HOH . O 3 HOH AAA 38 538 9 HOH HOH . O 3 HOH AAA 39 539 20 HOH HOH . O 3 HOH AAA 40 540 35 HOH HOH . O 3 HOH AAA 41 541 145 HOH HOH . O 3 HOH AAA 42 542 113 HOH HOH . O 3 HOH AAA 43 543 127 HOH HOH . O 3 HOH AAA 44 544 174 HOH HOH . O 3 HOH AAA 45 545 108 HOH HOH . O 3 HOH AAA 46 546 157 HOH HOH . O 3 HOH AAA 47 547 71 HOH HOH . O 3 HOH AAA 48 548 50 HOH HOH . O 3 HOH AAA 49 549 197 HOH HOH . O 3 HOH AAA 50 550 182 HOH HOH . O 3 HOH AAA 51 551 7 HOH HOH . O 3 HOH AAA 52 552 214 HOH HOH . O 3 HOH AAA 53 553 51 HOH HOH . O 3 HOH AAA 54 554 98 HOH HOH . O 3 HOH AAA 55 555 96 HOH HOH . O 3 HOH AAA 56 556 2 HOH HOH . O 3 HOH AAA 57 557 169 HOH HOH . O 3 HOH AAA 58 558 122 HOH HOH . O 3 HOH AAA 59 559 124 HOH HOH . O 3 HOH AAA 60 560 156 HOH HOH . O 3 HOH AAA 61 561 89 HOH HOH . O 3 HOH AAA 62 562 99 HOH HOH . O 3 HOH AAA 63 563 26 HOH HOH . O 3 HOH AAA 64 564 25 HOH HOH . O 3 HOH AAA 65 565 67 HOH HOH . O 3 HOH AAA 66 566 82 HOH HOH . O 3 HOH AAA 67 567 60 HOH HOH . O 3 HOH AAA 68 568 14 HOH HOH . O 3 HOH AAA 69 569 11 HOH HOH . O 3 HOH AAA 70 570 27 HOH HOH . O 3 HOH AAA 71 571 150 HOH HOH . O 3 HOH AAA 72 572 147 HOH HOH . O 3 HOH AAA 73 573 36 HOH HOH . O 3 HOH AAA 74 574 159 HOH HOH . O 3 HOH AAA 75 575 131 HOH HOH . O 3 HOH AAA 76 576 112 HOH HOH . O 3 HOH AAA 77 577 38 HOH HOH . O 3 HOH AAA 78 578 31 HOH HOH . O 3 HOH AAA 79 579 56 HOH HOH . O 3 HOH AAA 80 580 187 HOH HOH . O 3 HOH AAA 81 581 126 HOH HOH . O 3 HOH AAA 82 582 76 HOH HOH . O 3 HOH AAA 83 583 43 HOH HOH . O 3 HOH AAA 84 584 83 HOH HOH . O 3 HOH AAA 85 585 215 HOH HOH . O 3 HOH AAA 86 586 160 HOH HOH . O 3 HOH AAA 87 587 75 HOH HOH . O 3 HOH AAA 88 588 216 HOH HOH . O 3 HOH AAA 89 589 109 HOH HOH . O 3 HOH AAA 90 590 146 HOH HOH . O 3 HOH AAA 91 591 95 HOH HOH . O 3 HOH AAA 92 592 101 HOH HOH . O 3 HOH AAA 93 593 118 HOH HOH . O 3 HOH AAA 94 594 154 HOH HOH . O 3 HOH AAA 95 595 64 HOH HOH . O 3 HOH AAA 96 596 188 HOH HOH . P 3 HOH BBB 1 401 155 HOH HOH . P 3 HOH BBB 2 402 129 HOH HOH . P 3 HOH BBB 3 403 66 HOH HOH . P 3 HOH BBB 4 404 91 HOH HOH . P 3 HOH BBB 5 405 183 HOH HOH . P 3 HOH BBB 6 406 68 HOH HOH . P 3 HOH BBB 7 407 198 HOH HOH . P 3 HOH BBB 8 408 149 HOH HOH . P 3 HOH BBB 9 409 28 HOH HOH . P 3 HOH BBB 10 410 125 HOH HOH . P 3 HOH BBB 11 411 102 HOH HOH . P 3 HOH BBB 12 412 139 HOH HOH . P 3 HOH BBB 13 413 44 HOH HOH . P 3 HOH BBB 14 414 164 HOH HOH . P 3 HOH BBB 15 415 34 HOH HOH . P 3 HOH BBB 16 416 103 HOH HOH . P 3 HOH BBB 17 417 117 HOH HOH . P 3 HOH BBB 18 418 152 HOH HOH . P 3 HOH BBB 19 419 10 HOH HOH . P 3 HOH BBB 20 420 65 HOH HOH . P 3 HOH BBB 21 421 78 HOH HOH . P 3 HOH BBB 22 422 1 HOH HOH . P 3 HOH BBB 23 423 16 HOH HOH . P 3 HOH BBB 24 424 17 HOH HOH . P 3 HOH BBB 25 425 179 HOH HOH . P 3 HOH BBB 26 426 142 HOH HOH . P 3 HOH BBB 27 427 55 HOH HOH . P 3 HOH BBB 28 428 18 HOH HOH . P 3 HOH BBB 29 429 4 HOH HOH . P 3 HOH BBB 30 430 63 HOH HOH . P 3 HOH BBB 31 431 137 HOH HOH . P 3 HOH BBB 32 432 213 HOH HOH . P 3 HOH BBB 33 433 180 HOH HOH . P 3 HOH BBB 34 434 205 HOH HOH . P 3 HOH BBB 35 435 134 HOH HOH . P 3 HOH BBB 36 436 49 HOH HOH . P 3 HOH BBB 37 437 72 HOH HOH . P 3 HOH BBB 38 438 19 HOH HOH . P 3 HOH BBB 39 439 30 HOH HOH . P 3 HOH BBB 40 440 87 HOH HOH . P 3 HOH BBB 41 441 48 HOH HOH . P 3 HOH BBB 42 442 207 HOH HOH . P 3 HOH BBB 43 443 119 HOH HOH . P 3 HOH BBB 44 444 15 HOH HOH . P 3 HOH BBB 45 445 29 HOH HOH . P 3 HOH BBB 46 446 88 HOH HOH . P 3 HOH BBB 47 447 81 HOH HOH . P 3 HOH BBB 48 448 111 HOH HOH . P 3 HOH BBB 49 449 104 HOH HOH . P 3 HOH BBB 50 450 12 HOH HOH . P 3 HOH BBB 51 451 163 HOH HOH . P 3 HOH BBB 52 452 211 HOH HOH . P 3 HOH BBB 53 453 94 HOH HOH . P 3 HOH BBB 54 454 37 HOH HOH . P 3 HOH BBB 55 455 168 HOH HOH . P 3 HOH BBB 56 456 92 HOH HOH . P 3 HOH BBB 57 457 86 HOH HOH . P 3 HOH BBB 58 458 161 HOH HOH . P 3 HOH BBB 59 459 59 HOH HOH . P 3 HOH BBB 60 460 141 HOH HOH . P 3 HOH BBB 61 461 46 HOH HOH . P 3 HOH BBB 62 462 203 HOH HOH . P 3 HOH BBB 63 463 135 HOH HOH . P 3 HOH BBB 64 464 172 HOH HOH . P 3 HOH BBB 65 465 144 HOH HOH . P 3 HOH BBB 66 466 202 HOH HOH . P 3 HOH BBB 67 467 77 HOH HOH . P 3 HOH BBB 68 468 170 HOH HOH . P 3 HOH BBB 69 469 136 HOH HOH . P 3 HOH BBB 70 470 115 HOH HOH . P 3 HOH BBB 71 471 138 HOH HOH . P 3 HOH BBB 72 472 74 HOH HOH . P 3 HOH BBB 73 473 189 HOH HOH . P 3 HOH BBB 74 474 191 HOH HOH . P 3 HOH BBB 75 475 190 HOH HOH . P 3 HOH BBB 76 476 193 HOH HOH . P 3 HOH BBB 77 477 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . K 2 -5.334 26.852 29.47 1 24.58 ? N NO3 301 BBB 1 HETATM 2 O O1 NO3 . . . K 2 -5.339 26.825 28.209 1 19.92 ? O1 NO3 301 BBB 1 HETATM 3 O O2 NO3 . . . K 2 -6.242 27.417 30.091 1 29.56 ? O2 NO3 301 BBB 1 HETATM 4 O O3 NO3 . . . K 2 -4.466 26.285 30.119 1 21.09 ? O3 NO3 301 BBB 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #