data_7RYD
#
_model_server_result.job_id            sx0MbqJuIYIdnlXDEUrr3Q 
_model_server_result.datetime_utc      '2024-11-14 23:42:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ryd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":405}' 
#
_entry.id    7RYD 
#
_exptl.entry_id    7RYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.21 
_cell.angle_gamma         90 
_cell.entry_id            7RYD 
_cell.length_a            27.64 
_cell.length_b            62.45 
_cell.length_c            59.78 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,O 1 1 
B,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 B SG CYS 6 BBB CYS 6 1_555 B SG CYS 127 BBB CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf6 B SG CYS 30 BBB CYS 30 1_555 B SG CYS 115 BBB CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 B SG CYS 64 BBB CYS 64 1_555 B SG CYS 80 BBB CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf8 B SG CYS 76 BBB CYS 76 1_555 B SG CYS 94 BBB CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 237 n n 
N O2 NO3 sing 238 n n 
N O3 NO3 sing 239 n n 
#
_atom_sites.entry_id                     7RYD 
_atom_sites.fract_transf_matrix[1][1]    0.036179 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000133 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016728 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NO3 AAA 1 401 401 NO3 NO3 . 
D 2 NO3 AAA 1 402 501 NO3 NO3 . 
E 2 NO3 AAA 1 403 601 NO3 NO3 . 
F 2 NO3 AAA 1 404 801 NO3 NO3 . 
G 2 NO3 AAA 1 405 1201 NO3 NO3 . 
H 2 NO3 AAA 1 406 1401 NO3 NO3 . 
I 2 NO3 AAA 1 407 1501 NO3 NO3 . 
J 2 NO3 AAA 1 408 301 NO3 NO3 . 
K 2 NO3 BBB 1 301 301 NO3 NO3 . 
L 2 NO3 BBB 1 302 501 NO3 NO3 . 
M 2 NO3 BBB 1 303 601 NO3 NO3 . 
N 2 NO3 BBB 1 304 701 NO3 NO3 . 
O 3 HOH AAA 1 501 32 HOH HOH . 
O 3 HOH AAA 2 502 128 HOH HOH . 
O 3 HOH AAA 3 503 114 HOH HOH . 
O 3 HOH AAA 4 504 97 HOH HOH . 
O 3 HOH AAA 5 505 175 HOH HOH . 
O 3 HOH AAA 6 506 69 HOH HOH . 
O 3 HOH AAA 7 507 54 HOH HOH . 
O 3 HOH AAA 8 508 140 HOH HOH . 
O 3 HOH AAA 9 509 70 HOH HOH . 
O 3 HOH AAA 10 510 8 HOH HOH . 
O 3 HOH AAA 11 511 42 HOH HOH . 
O 3 HOH AAA 12 512 40 HOH HOH . 
O 3 HOH AAA 13 513 41 HOH HOH . 
O 3 HOH AAA 14 514 199 HOH HOH . 
O 3 HOH AAA 15 515 106 HOH HOH . 
O 3 HOH AAA 16 516 123 HOH HOH . 
O 3 HOH AAA 17 517 33 HOH HOH . 
O 3 HOH AAA 18 518 57 HOH HOH . 
O 3 HOH AAA 19 519 58 HOH HOH . 
O 3 HOH AAA 20 520 192 HOH HOH . 
O 3 HOH AAA 21 521 206 HOH HOH . 
O 3 HOH AAA 22 522 208 HOH HOH . 
O 3 HOH AAA 23 523 73 HOH HOH . 
O 3 HOH AAA 24 524 47 HOH HOH . 
O 3 HOH AAA 25 525 165 HOH HOH . 
O 3 HOH AAA 26 526 53 HOH HOH . 
O 3 HOH AAA 27 527 90 HOH HOH . 
O 3 HOH AAA 28 528 23 HOH HOH . 
O 3 HOH AAA 29 529 24 HOH HOH . 
O 3 HOH AAA 30 530 121 HOH HOH . 
O 3 HOH AAA 31 531 110 HOH HOH . 
O 3 HOH AAA 32 532 13 HOH HOH . 
O 3 HOH AAA 33 533 61 HOH HOH . 
O 3 HOH AAA 34 534 52 HOH HOH . 
O 3 HOH AAA 35 535 80 HOH HOH . 
O 3 HOH AAA 36 536 22 HOH HOH . 
O 3 HOH AAA 37 537 21 HOH HOH . 
O 3 HOH AAA 38 538 9 HOH HOH . 
O 3 HOH AAA 39 539 20 HOH HOH . 
O 3 HOH AAA 40 540 35 HOH HOH . 
O 3 HOH AAA 41 541 145 HOH HOH . 
O 3 HOH AAA 42 542 113 HOH HOH . 
O 3 HOH AAA 43 543 127 HOH HOH . 
O 3 HOH AAA 44 544 174 HOH HOH . 
O 3 HOH AAA 45 545 108 HOH HOH . 
O 3 HOH AAA 46 546 157 HOH HOH . 
O 3 HOH AAA 47 547 71 HOH HOH . 
O 3 HOH AAA 48 548 50 HOH HOH . 
O 3 HOH AAA 49 549 197 HOH HOH . 
O 3 HOH AAA 50 550 182 HOH HOH . 
O 3 HOH AAA 51 551 7 HOH HOH . 
O 3 HOH AAA 52 552 214 HOH HOH . 
O 3 HOH AAA 53 553 51 HOH HOH . 
O 3 HOH AAA 54 554 98 HOH HOH . 
O 3 HOH AAA 55 555 96 HOH HOH . 
O 3 HOH AAA 56 556 2 HOH HOH . 
O 3 HOH AAA 57 557 169 HOH HOH . 
O 3 HOH AAA 58 558 122 HOH HOH . 
O 3 HOH AAA 59 559 124 HOH HOH . 
O 3 HOH AAA 60 560 156 HOH HOH . 
O 3 HOH AAA 61 561 89 HOH HOH . 
O 3 HOH AAA 62 562 99 HOH HOH . 
O 3 HOH AAA 63 563 26 HOH HOH . 
O 3 HOH AAA 64 564 25 HOH HOH . 
O 3 HOH AAA 65 565 67 HOH HOH . 
O 3 HOH AAA 66 566 82 HOH HOH . 
O 3 HOH AAA 67 567 60 HOH HOH . 
O 3 HOH AAA 68 568 14 HOH HOH . 
O 3 HOH AAA 69 569 11 HOH HOH . 
O 3 HOH AAA 70 570 27 HOH HOH . 
O 3 HOH AAA 71 571 150 HOH HOH . 
O 3 HOH AAA 72 572 147 HOH HOH . 
O 3 HOH AAA 73 573 36 HOH HOH . 
O 3 HOH AAA 74 574 159 HOH HOH . 
O 3 HOH AAA 75 575 131 HOH HOH . 
O 3 HOH AAA 76 576 112 HOH HOH . 
O 3 HOH AAA 77 577 38 HOH HOH . 
O 3 HOH AAA 78 578 31 HOH HOH . 
O 3 HOH AAA 79 579 56 HOH HOH . 
O 3 HOH AAA 80 580 187 HOH HOH . 
O 3 HOH AAA 81 581 126 HOH HOH . 
O 3 HOH AAA 82 582 76 HOH HOH . 
O 3 HOH AAA 83 583 43 HOH HOH . 
O 3 HOH AAA 84 584 83 HOH HOH . 
O 3 HOH AAA 85 585 215 HOH HOH . 
O 3 HOH AAA 86 586 160 HOH HOH . 
O 3 HOH AAA 87 587 75 HOH HOH . 
O 3 HOH AAA 88 588 216 HOH HOH . 
O 3 HOH AAA 89 589 109 HOH HOH . 
O 3 HOH AAA 90 590 146 HOH HOH . 
O 3 HOH AAA 91 591 95 HOH HOH . 
O 3 HOH AAA 92 592 101 HOH HOH . 
O 3 HOH AAA 93 593 118 HOH HOH . 
O 3 HOH AAA 94 594 154 HOH HOH . 
O 3 HOH AAA 95 595 64 HOH HOH . 
O 3 HOH AAA 96 596 188 HOH HOH . 
P 3 HOH BBB 1 401 155 HOH HOH . 
P 3 HOH BBB 2 402 129 HOH HOH . 
P 3 HOH BBB 3 403 66 HOH HOH . 
P 3 HOH BBB 4 404 91 HOH HOH . 
P 3 HOH BBB 5 405 183 HOH HOH . 
P 3 HOH BBB 6 406 68 HOH HOH . 
P 3 HOH BBB 7 407 198 HOH HOH . 
P 3 HOH BBB 8 408 149 HOH HOH . 
P 3 HOH BBB 9 409 28 HOH HOH . 
P 3 HOH BBB 10 410 125 HOH HOH . 
P 3 HOH BBB 11 411 102 HOH HOH . 
P 3 HOH BBB 12 412 139 HOH HOH . 
P 3 HOH BBB 13 413 44 HOH HOH . 
P 3 HOH BBB 14 414 164 HOH HOH . 
P 3 HOH BBB 15 415 34 HOH HOH . 
P 3 HOH BBB 16 416 103 HOH HOH . 
P 3 HOH BBB 17 417 117 HOH HOH . 
P 3 HOH BBB 18 418 152 HOH HOH . 
P 3 HOH BBB 19 419 10 HOH HOH . 
P 3 HOH BBB 20 420 65 HOH HOH . 
P 3 HOH BBB 21 421 78 HOH HOH . 
P 3 HOH BBB 22 422 1 HOH HOH . 
P 3 HOH BBB 23 423 16 HOH HOH . 
P 3 HOH BBB 24 424 17 HOH HOH . 
P 3 HOH BBB 25 425 179 HOH HOH . 
P 3 HOH BBB 26 426 142 HOH HOH . 
P 3 HOH BBB 27 427 55 HOH HOH . 
P 3 HOH BBB 28 428 18 HOH HOH . 
P 3 HOH BBB 29 429 4 HOH HOH . 
P 3 HOH BBB 30 430 63 HOH HOH . 
P 3 HOH BBB 31 431 137 HOH HOH . 
P 3 HOH BBB 32 432 213 HOH HOH . 
P 3 HOH BBB 33 433 180 HOH HOH . 
P 3 HOH BBB 34 434 205 HOH HOH . 
P 3 HOH BBB 35 435 134 HOH HOH . 
P 3 HOH BBB 36 436 49 HOH HOH . 
P 3 HOH BBB 37 437 72 HOH HOH . 
P 3 HOH BBB 38 438 19 HOH HOH . 
P 3 HOH BBB 39 439 30 HOH HOH . 
P 3 HOH BBB 40 440 87 HOH HOH . 
P 3 HOH BBB 41 441 48 HOH HOH . 
P 3 HOH BBB 42 442 207 HOH HOH . 
P 3 HOH BBB 43 443 119 HOH HOH . 
P 3 HOH BBB 44 444 15 HOH HOH . 
P 3 HOH BBB 45 445 29 HOH HOH . 
P 3 HOH BBB 46 446 88 HOH HOH . 
P 3 HOH BBB 47 447 81 HOH HOH . 
P 3 HOH BBB 48 448 111 HOH HOH . 
P 3 HOH BBB 49 449 104 HOH HOH . 
P 3 HOH BBB 50 450 12 HOH HOH . 
P 3 HOH BBB 51 451 163 HOH HOH . 
P 3 HOH BBB 52 452 211 HOH HOH . 
P 3 HOH BBB 53 453 94 HOH HOH . 
P 3 HOH BBB 54 454 37 HOH HOH . 
P 3 HOH BBB 55 455 168 HOH HOH . 
P 3 HOH BBB 56 456 92 HOH HOH . 
P 3 HOH BBB 57 457 86 HOH HOH . 
P 3 HOH BBB 58 458 161 HOH HOH . 
P 3 HOH BBB 59 459 59 HOH HOH . 
P 3 HOH BBB 60 460 141 HOH HOH . 
P 3 HOH BBB 61 461 46 HOH HOH . 
P 3 HOH BBB 62 462 203 HOH HOH . 
P 3 HOH BBB 63 463 135 HOH HOH . 
P 3 HOH BBB 64 464 172 HOH HOH . 
P 3 HOH BBB 65 465 144 HOH HOH . 
P 3 HOH BBB 66 466 202 HOH HOH . 
P 3 HOH BBB 67 467 77 HOH HOH . 
P 3 HOH BBB 68 468 170 HOH HOH . 
P 3 HOH BBB 69 469 136 HOH HOH . 
P 3 HOH BBB 70 470 115 HOH HOH . 
P 3 HOH BBB 71 471 138 HOH HOH . 
P 3 HOH BBB 72 472 74 HOH HOH . 
P 3 HOH BBB 73 473 189 HOH HOH . 
P 3 HOH BBB 74 474 191 HOH HOH . 
P 3 HOH BBB 75 475 190 HOH HOH . 
P 3 HOH BBB 76 476 193 HOH HOH . 
P 3 HOH BBB 77 477 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . A . G 2 -6.58 -3.21 1.494 0.5 19.68 ? N NO3 405 AAA 1 
HETATM 2 N N NO3 . B . G 2 -6.281 -3.398 2.429 0.5 22.1 ? N NO3 405 AAA 1 
HETATM 3 O O1 NO3 . A . G 2 -7.04 -2.786 0.439 0.5 16.51 ? O1 NO3 405 AAA 1 
HETATM 4 O O1 NO3 . B . G 2 -6.725 -3.117 1.304 0.5 15.72 ? O1 NO3 405 AAA 1 
HETATM 5 O O2 NO3 . A . G 2 -7.172 -4.088 2.112 0.5 21.84 ? O2 NO3 405 AAA 1 
HETATM 6 O O2 NO3 . B . G 2 -6.869 -4.223 3.119 0.5 30.83 ? O2 NO3 405 AAA 1 
HETATM 7 O O3 NO3 . A . G 2 -5.528 -2.756 1.93 0.5 18.97 ? O3 NO3 405 AAA 1 
HETATM 8 O O3 NO3 . B . G 2 -5.25 -2.862 2.883 0.5 20.7 ? O3 NO3 405 AAA 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           400 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#