data_7RYK
#
_model_server_result.job_id            HSheBrnN2Fs-Td-DsUJRcQ 
_model_server_result.datetime_utc      '2024-11-28 00:57:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ryk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    7RYK 
#
_exptl.entry_id    7RYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.57 
_cell.angle_gamma         90 
_cell.entry_id            7RYK 
_cell.length_a            27.46 
_cell.length_b            62.35 
_cell.length_c            59.47 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RYK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,O 1 1 
B,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
disulf ? disulf5 B SG CYS 6 BBB CYS 6 1_555 B SG CYS 127 BBB CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf6 B SG CYS 30 BBB CYS 30 1_555 B SG CYS 115 BBB CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf7 B SG CYS 64 BBB CYS 64 1_555 B SG CYS 80 BBB CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 B SG CYS 76 BBB CYS 76 1_555 B SG CYS 94 BBB CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 237 n n 
N O2 NO3 sing 238 n n 
N O3 NO3 sing 239 n n 
#
_atom_sites.entry_id                     7RYK 
_atom_sites.fract_transf_matrix[1][1]    0.036417 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000362 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016038 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016816 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NO3 AAA 1 301 301 NO3 NO3 . 
D 2 NO3 AAA 1 302 401 NO3 NO3 . 
E 2 NO3 AAA 1 303 501 NO3 NO3 . 
F 2 NO3 AAA 1 304 701 NO3 NO3 . 
G 2 NO3 AAA 1 305 901 NO3 NO3 . 
H 2 NO3 AAA 1 306 1001 NO3 NO3 . 
I 2 NO3 AAA 1 307 1001 NO3 NO3 . 
J 2 NO3 BBB 1 301 301 NO3 NO3 . 
K 2 NO3 BBB 1 302 401 NO3 NO3 . 
L 2 NO3 BBB 1 303 601 NO3 NO3 . 
M 2 NO3 BBB 1 304 801 NO3 NO3 . 
N 2 NO3 BBB 1 305 1101 NO3 NO3 . 
O 3 HOH AAA 1 401 88 HOH HOH . 
O 3 HOH AAA 2 402 191 HOH HOH . 
O 3 HOH AAA 3 403 122 HOH HOH . 
O 3 HOH AAA 4 404 70 HOH HOH . 
O 3 HOH AAA 5 405 59 HOH HOH . 
O 3 HOH AAA 6 406 52 HOH HOH . 
O 3 HOH AAA 7 407 103 HOH HOH . 
O 3 HOH AAA 8 408 202 HOH HOH . 
O 3 HOH AAA 9 409 107 HOH HOH . 
O 3 HOH AAA 10 410 6 HOH HOH . 
O 3 HOH AAA 11 411 60 HOH HOH . 
O 3 HOH AAA 12 412 33 HOH HOH . 
O 3 HOH AAA 13 413 73 HOH HOH . 
O 3 HOH AAA 14 414 54 HOH HOH . 
O 3 HOH AAA 15 415 38 HOH HOH . 
O 3 HOH AAA 16 416 58 HOH HOH . 
O 3 HOH AAA 17 417 211 HOH HOH . 
O 3 HOH AAA 18 418 85 HOH HOH . 
O 3 HOH AAA 19 419 39 HOH HOH . 
O 3 HOH AAA 20 420 15 HOH HOH . 
O 3 HOH AAA 21 421 112 HOH HOH . 
O 3 HOH AAA 22 422 28 HOH HOH . 
O 3 HOH AAA 23 423 49 HOH HOH . 
O 3 HOH AAA 24 424 78 HOH HOH . 
O 3 HOH AAA 25 425 83 HOH HOH . 
O 3 HOH AAA 26 426 76 HOH HOH . 
O 3 HOH AAA 27 427 121 HOH HOH . 
O 3 HOH AAA 28 428 27 HOH HOH . 
O 3 HOH AAA 29 429 166 HOH HOH . 
O 3 HOH AAA 30 430 26 HOH HOH . 
O 3 HOH AAA 31 431 189 HOH HOH . 
O 3 HOH AAA 32 432 10 HOH HOH . 
O 3 HOH AAA 33 433 111 HOH HOH . 
O 3 HOH AAA 34 434 100 HOH HOH . 
O 3 HOH AAA 35 435 200 HOH HOH . 
O 3 HOH AAA 36 436 11 HOH HOH . 
O 3 HOH AAA 37 437 89 HOH HOH . 
O 3 HOH AAA 38 438 55 HOH HOH . 
O 3 HOH AAA 39 439 19 HOH HOH . 
O 3 HOH AAA 40 440 106 HOH HOH . 
O 3 HOH AAA 41 441 24 HOH HOH . 
O 3 HOH AAA 42 442 32 HOH HOH . 
O 3 HOH AAA 43 443 43 HOH HOH . 
O 3 HOH AAA 44 444 95 HOH HOH . 
O 3 HOH AAA 45 445 97 HOH HOH . 
O 3 HOH AAA 46 446 18 HOH HOH . 
O 3 HOH AAA 47 447 23 HOH HOH . 
O 3 HOH AAA 48 448 21 HOH HOH . 
O 3 HOH AAA 49 449 91 HOH HOH . 
O 3 HOH AAA 50 450 71 HOH HOH . 
O 3 HOH AAA 51 451 12 HOH HOH . 
O 3 HOH AAA 52 452 196 HOH HOH . 
O 3 HOH AAA 53 453 163 HOH HOH . 
O 3 HOH AAA 54 454 40 HOH HOH . 
O 3 HOH AAA 55 455 47 HOH HOH . 
O 3 HOH AAA 56 456 35 HOH HOH . 
O 3 HOH AAA 57 457 98 HOH HOH . 
O 3 HOH AAA 58 458 29 HOH HOH . 
O 3 HOH AAA 59 459 229 HOH HOH . 
O 3 HOH AAA 60 460 115 HOH HOH . 
O 3 HOH AAA 61 461 130 HOH HOH . 
O 3 HOH AAA 62 462 195 HOH HOH . 
O 3 HOH AAA 63 463 193 HOH HOH . 
O 3 HOH AAA 64 464 79 HOH HOH . 
O 3 HOH AAA 65 465 183 HOH HOH . 
O 3 HOH AAA 66 466 129 HOH HOH . 
O 3 HOH AAA 67 467 36 HOH HOH . 
O 3 HOH AAA 68 468 25 HOH HOH . 
O 3 HOH AAA 69 469 139 HOH HOH . 
O 3 HOH AAA 70 470 65 HOH HOH . 
O 3 HOH AAA 71 471 45 HOH HOH . 
O 3 HOH AAA 72 472 74 HOH HOH . 
O 3 HOH AAA 73 473 170 HOH HOH . 
O 3 HOH AAA 74 474 128 HOH HOH . 
O 3 HOH AAA 75 475 212 HOH HOH . 
O 3 HOH AAA 76 476 185 HOH HOH . 
O 3 HOH AAA 77 477 194 HOH HOH . 
O 3 HOH AAA 78 478 206 HOH HOH . 
O 3 HOH AAA 79 479 137 HOH HOH . 
O 3 HOH AAA 80 480 131 HOH HOH . 
O 3 HOH AAA 81 481 110 HOH HOH . 
O 3 HOH AAA 82 482 108 HOH HOH . 
O 3 HOH AAA 83 483 136 HOH HOH . 
O 3 HOH AAA 84 484 231 HOH HOH . 
O 3 HOH AAA 85 485 204 HOH HOH . 
O 3 HOH AAA 86 486 135 HOH HOH . 
O 3 HOH AAA 87 487 209 HOH HOH . 
O 3 HOH AAA 88 488 213 HOH HOH . 
O 3 HOH AAA 89 489 127 HOH HOH . 
O 3 HOH AAA 90 490 133 HOH HOH . 
O 3 HOH AAA 91 491 232 HOH HOH . 
O 3 HOH AAA 92 492 207 HOH HOH . 
P 3 HOH BBB 1 401 146 HOH HOH . 
P 3 HOH BBB 2 402 61 HOH HOH . 
P 3 HOH BBB 3 403 105 HOH HOH . 
P 3 HOH BBB 4 404 227 HOH HOH . 
P 3 HOH BBB 5 405 147 HOH HOH . 
P 3 HOH BBB 6 406 51 HOH HOH . 
P 3 HOH BBB 7 407 17 HOH HOH . 
P 3 HOH BBB 8 408 57 HOH HOH . 
P 3 HOH BBB 9 409 48 HOH HOH . 
P 3 HOH BBB 10 410 214 HOH HOH . 
P 3 HOH BBB 11 411 68 HOH HOH . 
P 3 HOH BBB 12 412 50 HOH HOH . 
P 3 HOH BBB 13 413 203 HOH HOH . 
P 3 HOH BBB 14 414 222 HOH HOH . 
P 3 HOH BBB 15 415 199 HOH HOH . 
P 3 HOH BBB 16 416 118 HOH HOH . 
P 3 HOH BBB 17 417 84 HOH HOH . 
P 3 HOH BBB 18 418 162 HOH HOH . 
P 3 HOH BBB 19 419 216 HOH HOH . 
P 3 HOH BBB 20 420 126 HOH HOH . 
P 3 HOH BBB 21 421 81 HOH HOH . 
P 3 HOH BBB 22 422 64 HOH HOH . 
P 3 HOH BBB 23 423 192 HOH HOH . 
P 3 HOH BBB 24 424 22 HOH HOH . 
P 3 HOH BBB 25 425 8 HOH HOH . 
P 3 HOH BBB 26 426 198 HOH HOH . 
P 3 HOH BBB 27 427 69 HOH HOH . 
P 3 HOH BBB 28 428 173 HOH HOH . 
P 3 HOH BBB 29 429 94 HOH HOH . 
P 3 HOH BBB 30 430 37 HOH HOH . 
P 3 HOH BBB 31 431 104 HOH HOH . 
P 3 HOH BBB 32 432 20 HOH HOH . 
P 3 HOH BBB 33 433 93 HOH HOH . 
P 3 HOH BBB 34 434 114 HOH HOH . 
P 3 HOH BBB 35 435 31 HOH HOH . 
P 3 HOH BBB 36 436 34 HOH HOH . 
P 3 HOH BBB 37 437 82 HOH HOH . 
P 3 HOH BBB 38 438 56 HOH HOH . 
P 3 HOH BBB 39 439 75 HOH HOH . 
P 3 HOH BBB 40 440 5 HOH HOH . 
P 3 HOH BBB 41 441 30 HOH HOH . 
P 3 HOH BBB 42 442 217 HOH HOH . 
P 3 HOH BBB 43 443 149 HOH HOH . 
P 3 HOH BBB 44 444 101 HOH HOH . 
P 3 HOH BBB 45 445 223 HOH HOH . 
P 3 HOH BBB 46 446 224 HOH HOH . 
P 3 HOH BBB 47 447 92 HOH HOH . 
P 3 HOH BBB 48 448 66 HOH HOH . 
P 3 HOH BBB 49 449 120 HOH HOH . 
P 3 HOH BBB 50 450 219 HOH HOH . 
P 3 HOH BBB 51 451 168 HOH HOH . 
P 3 HOH BBB 52 452 13 HOH HOH . 
P 3 HOH BBB 53 453 113 HOH HOH . 
P 3 HOH BBB 54 454 80 HOH HOH . 
P 3 HOH BBB 55 455 41 HOH HOH . 
P 3 HOH BBB 56 456 220 HOH HOH . 
P 3 HOH BBB 57 457 225 HOH HOH . 
P 3 HOH BBB 58 458 77 HOH HOH . 
P 3 HOH BBB 59 459 187 HOH HOH . 
P 3 HOH BBB 60 460 46 HOH HOH . 
P 3 HOH BBB 61 461 125 HOH HOH . 
P 3 HOH BBB 62 462 186 HOH HOH . 
P 3 HOH BBB 63 463 124 HOH HOH . 
P 3 HOH BBB 64 464 230 HOH HOH . 
P 3 HOH BBB 65 465 228 HOH HOH . 
P 3 HOH BBB 66 466 226 HOH HOH . 
P 3 HOH BBB 67 467 117 HOH HOH . 
P 3 HOH BBB 68 468 215 HOH HOH . 
P 3 HOH BBB 69 469 102 HOH HOH . 
P 3 HOH BBB 70 470 90 HOH HOH . 
P 3 HOH BBB 71 471 221 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . J 2 18.799 -17.706 46.502 1 42.37 ? N NO3 301 BBB 1 
HETATM 2 O O1 NO3 . . . J 2 19.706 -16.907 46.299 1 47.1 ? O1 NO3 301 BBB 1 
HETATM 3 O O2 NO3 . . . J 2 17.654 -17.31 46.466 1 36.35 ? O2 NO3 301 BBB 1 
HETATM 4 O O3 NO3 . . . J 2 19.04 -18.896 46.736 1 44.29 ? O3 NO3 301 BBB 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#