data_7RYN # _model_server_result.job_id DLfZOrEfWYP6zryrMOyhPg _model_server_result.datetime_utc '2024-10-15 11:26:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ryn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 7RYN # _exptl.entry_id 7RYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.288 _cell.angle_gamma 90 _cell.entry_id 7RYN _cell.length_a 234.633 _cell.length_b 42.206 _cell.length_c 123.065 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 102 1_555 A SG CYS 168 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 208 A CYS 206 1_555 A SG CYS 263 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 28 B CYS 26 1_555 B SG CYS 83 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 25 C CYS 25 1_555 C SG CYS 97 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 C SG CYS 149 C CYS 149 1_555 C SG CYS 214 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 C SG CYS 175 C CYS 175 1_555 D SG CYS 163 D CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 24 D CYS 24 1_555 D SG CYS 92 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 59 A ASN 57 1_555 G C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 398 n n C1 O1 NAG sing 399 n n C1 O5 NAG sing 400 n n C1 H1 NAG sing 401 n n C2 C3 NAG sing 402 n n C2 N2 NAG sing 403 n n C2 H2 NAG sing 404 n n C3 C4 NAG sing 405 n n C3 O3 NAG sing 406 n n C3 H3 NAG sing 407 n n C4 C5 NAG sing 408 n n C4 O4 NAG sing 409 n n C4 H4 NAG sing 410 n n C5 C6 NAG sing 411 n n C5 O5 NAG sing 412 n n C5 H5 NAG sing 413 n n C6 O6 NAG sing 414 n n C6 H61 NAG sing 415 n n C6 H62 NAG sing 416 n n C7 C8 NAG sing 417 n n C7 N2 NAG sing 418 n n C7 O7 NAG doub 419 n n C8 H81 NAG sing 420 n n C8 H82 NAG sing 421 n n C8 H83 NAG sing 422 n n N2 HN2 NAG sing 423 n n O1 HO1 NAG sing 424 n n O3 HO3 NAG sing 425 n n O4 HO4 NAG sing 426 n n O6 HO6 NAG sing 427 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7RYN _atom_sites.fract_transf_matrix[1][1] 0.004262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001923 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CIS A 1 301 301 CIS CIS . F 6 EDO A 1 302 401 EDO EDO . G 7 NAG A 1 303 402 NAG NAG . H 6 EDO A 1 304 501 EDO EDO . I 6 EDO A 1 305 601 EDO EDO . J 6 EDO A 1 306 701 EDO EDO . K 6 EDO A 1 307 201 EDO EDO . L 8 PEG A 1 308 301 PEG PEG . M 9 SO4 A 1 309 4 SO4 SO4 . N 6 EDO B 1 401 401 EDO EDO . O 9 SO4 C 1 301 3 SO4 SO4 . P 10 HOH A 1 401 4 HOH HOH . P 10 HOH A 2 402 12 HOH HOH . P 10 HOH A 3 403 1 HOH HOH . P 10 HOH A 4 404 2 HOH HOH . P 10 HOH A 5 405 10 HOH HOH . P 10 HOH A 6 406 9 HOH HOH . P 10 HOH A 7 407 6 HOH HOH . P 10 HOH A 8 408 11 HOH HOH . Q 10 HOH B 1 501 13 HOH HOH . Q 10 HOH B 2 502 3 HOH HOH . Q 10 HOH B 3 503 5 HOH HOH . Q 10 HOH B 4 504 7 HOH HOH . Q 10 HOH B 5 505 8 HOH HOH . Q 10 HOH B 6 506 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 7 18.316 23.182 -24.972 1 141.49 ? C1 NAG 303 A 1 HETATM 2 C C2 NAG . . . G 7 19.322 22.231 -25.609 1 139.36 ? C2 NAG 303 A 1 HETATM 3 C C3 NAG . . . G 7 18.892 21.892 -27.028 1 146.03 ? C3 NAG 303 A 1 HETATM 4 C C4 NAG . . . G 7 17.477 21.33 -27.031 1 152.9 ? C4 NAG 303 A 1 HETATM 5 C C5 NAG . . . G 7 16.517 22.272 -26.304 1 148.83 ? C5 NAG 303 A 1 HETATM 6 C C6 NAG . . . G 7 15.134 21.684 -26.132 1 143.68 ? C6 NAG 303 A 1 HETATM 7 C C7 NAG . . . G 7 21.677 22.252 -24.915 1 131.08 ? C7 NAG 303 A 1 HETATM 8 C C8 NAG . . . G 7 22.997 22.954 -25.03 1 110.62 ? C8 NAG 303 A 1 HETATM 9 N N2 NAG . . . G 7 20.665 22.791 -25.603 1 136.11 ? N2 NAG 303 A 1 HETATM 10 O O3 NAG . . . G 7 19.8 20.946 -27.581 1 136.93 ? O3 NAG 303 A 1 HETATM 11 O O4 NAG . . . G 7 17.035 21.17 -28.374 1 153.53 ? O4 NAG 303 A 1 HETATM 12 O O5 NAG . . . G 7 17.005 22.578 -24.987 1 147.07 ? O5 NAG 303 A 1 HETATM 13 O O6 NAG . . . G 7 15.188 20.35 -25.645 1 129.89 ? O6 NAG 303 A 1 HETATM 14 O O7 NAG . . . G 7 21.534 21.245 -24.227 1 131.91 ? O7 NAG 303 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #