data_7RYR
#
_model_server_result.job_id            LpL5-VPf-B-R2XtKqc0FSA 
_model_server_result.datetime_utc      '2025-07-04 23:33:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ryr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":501}' 
#
_entry.id    7RYR 
#
_exptl.entry_id    7RYR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              329.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RYR 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 N N N 
? 2 W N N 
? 2 DA N N 
#
_chem_comp.formula           'C10 H12 N5 O6 P' 
_chem_comp.formula_weight    329.206 
_chem_comp.id                CMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CYCLIC AMP;CAMP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CMP doub 70 n n 
P O2P CMP sing 71 n n 
P O5' CMP sing 72 n n 
P O3' CMP sing 73 n n 
O2P HOP2 CMP sing 74 n n 
O5' C5' CMP sing 75 n n 
C5' C4' CMP sing 76 n n 
C5' "H5'1" CMP sing 77 n n 
C5' "H5'2" CMP sing 78 n n 
C4' O4' CMP sing 79 n n 
C4' C3' CMP sing 80 n n 
C4' H4' CMP sing 81 n n 
O4' C1' CMP sing 82 n n 
C3' O3' CMP sing 83 n n 
C3' C2' CMP sing 84 n n 
C3' H3' CMP sing 85 n n 
C2' O2' CMP sing 86 n n 
C2' C1' CMP sing 87 n n 
C2' H2' CMP sing 88 n n 
O2' HO2' CMP sing 89 n n 
C1' N9 CMP sing 90 n n 
C1' H1' CMP sing 91 n n 
N9 C8 CMP sing 92 n y 
N9 C4 CMP sing 93 n y 
C8 N7 CMP doub 94 n y 
C8 H8 CMP sing 95 n n 
N7 C5 CMP sing 96 n y 
C5 C6 CMP sing 97 n y 
C5 C4 CMP doub 98 n y 
C6 N6 CMP sing 99 n n 
C6 N1 CMP doub 100 n y 
N6 HN61 CMP sing 101 n n 
N6 HN62 CMP sing 102 n n 
N1 C2 CMP sing 103 n y 
C2 N3 CMP doub 104 n y 
C2 H2 CMP sing 105 n n 
N3 C4 CMP sing 106 n y 
#
_atom_sites.entry_id                     7RYR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CMP A 1 501 1424 CMP CMP . 
F 3 PGW A 1 502 501 PGW PGW . 
G 3 PGW A 1 503 502 PGW PGW . 
H 3 PGW A 1 504 504 PGW PGW . 
I 3 PGW A 1 505 505 PGW PGW . 
J 3 PGW A 1 506 506 PGW PGW . 
K 3 PGW A 1 507 507 PGW PGW . 
L 3 PGW A 1 508 508 PGW PGW . 
M 3 PGW A 1 509 506 PGW PGW . 
N 2 CMP C 1 501 1424 CMP CMP . 
O 3 PGW C 1 502 501 PGW PGW . 
P 3 PGW C 1 503 502 PGW PGW . 
Q 3 PGW C 1 504 504 PGW PGW . 
R 3 PGW C 1 505 505 PGW PGW . 
S 3 PGW C 1 506 506 PGW PGW . 
T 3 PGW C 1 507 507 PGW PGW . 
U 3 PGW C 1 508 508 PGW PGW . 
V 3 PGW C 1 509 506 PGW PGW . 
W 2 CMP D 1 501 1424 CMP CMP . 
X 3 PGW D 1 502 501 PGW PGW . 
Y 3 PGW D 1 503 502 PGW PGW . 
Z 3 PGW D 1 504 504 PGW PGW . 
AA 3 PGW D 1 505 505 PGW PGW . 
BA 3 PGW D 1 506 507 PGW PGW . 
CA 3 PGW D 1 507 508 PGW PGW . 
DA 2 CMP B 1 501 1424 CMP CMP . 
EA 3 PGW B 1 502 501 PGW PGW . 
FA 3 PGW B 1 503 502 PGW PGW . 
GA 3 PGW B 1 504 504 PGW PGW . 
HA 3 PGW B 1 505 505 PGW PGW . 
IA 3 PGW B 1 506 507 PGW PGW . 
JA 3 PGW B 1 507 508 PGW PGW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CMP . . . N 2 137.932 102.796 85.286 1 88.05 ? P CMP 501 C 1 
HETATM 2 O O1P CMP . . . N 2 137.404 102.255 83.978 1 88.05 ? O1P CMP 501 C 1 
HETATM 3 O O2P CMP . . . N 2 137.912 104.287 85.514 1 88.05 ? O2P CMP 501 C 1 
HETATM 4 O O5' CMP . . . N 2 137.027 102.137 86.438 1 88.05 ? O5' CMP 501 C 1 
HETATM 5 C C5' CMP . . . N 2 137.299 100.84 86.966 1 88.05 ? C5' CMP 501 C 1 
HETATM 6 C C4' CMP . . . N 2 138.782 100.67 87.102 1 88.05 ? C4' CMP 501 C 1 
HETATM 7 O O4' CMP . . . N 2 139.178 99.328 87.457 1 88.05 ? O4' CMP 501 C 1 
HETATM 8 C C3' CMP . . . N 2 139.527 100.908 85.821 1 88.05 ? C3' CMP 501 C 1 
HETATM 9 O O3' CMP . . . N 2 139.459 102.268 85.454 1 88.05 ? O3' CMP 501 C 1 
HETATM 10 C C2' CMP . . . N 2 140.9 100.34 86.15 1 88.05 ? C2' CMP 501 C 1 
HETATM 11 O O2' CMP . . . N 2 141.634 101.238 86.968 1 88.05 ? O2' CMP 501 C 1 
HETATM 12 C C1' CMP . . . N 2 140.505 99.116 87.001 1 88.05 ? C1' CMP 501 C 1 
HETATM 13 N N9 CMP . . . N 2 140.554 97.855 86.237 1 88.05 ? N9 CMP 501 C 1 
HETATM 14 C C8 CMP . . . N 2 139.762 97.514 85.201 1 88.05 ? C8 CMP 501 C 1 
HETATM 15 N N7 CMP . . . N 2 140.074 96.279 84.732 1 88.05 ? N7 CMP 501 C 1 
HETATM 16 C C5 CMP . . . N 2 141.085 95.804 85.482 1 88.05 ? C5 CMP 501 C 1 
HETATM 17 C C6 CMP . . . N 2 141.891 94.561 85.526 1 88.05 ? C6 CMP 501 C 1 
HETATM 18 N N6 CMP . . . N 2 141.672 93.551 84.65 1 88.05 ? N6 CMP 501 C 1 
HETATM 19 N N1 CMP . . . N 2 142.852 94.469 86.472 1 88.05 ? N1 CMP 501 C 1 
HETATM 20 C C2 CMP . . . N 2 143.081 95.464 87.348 1 88.05 ? C2 CMP 501 C 1 
HETATM 21 N N3 CMP . . . N 2 142.389 96.617 87.365 1 88.05 ? N3 CMP 501 C 1 
HETATM 22 C C4 CMP . . . N 2 141.393 96.844 86.475 1 88.05 ? C4 CMP 501 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           22 
#