data_7RZ4
#
_model_server_result.job_id            rauObQGQEw0vBkwMr2JF7w 
_model_server_result.datetime_utc      '2024-11-21 13:36:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rz4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1101}' 
#
_entry.id    7RZ4 
#
_exptl.entry_id    7RZ4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              409.254 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RZ4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RZ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 M N N 
? 2 U N N 
? 2 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 881 A CYS 890 1_555 A SG CYS 891 A CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 C SG CYS 881 C CYS 890 1_555 C SG CYS 891 C CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 346 A ASN 355 1_555 F C1 NAG . A NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 B ND2 ASN 346 B ASN 355 1_555 N C1 NAG . B NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale3 C ND2 ASN 346 C ASN 355 1_555 V C1 NAG . C NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale4 D ND2 ASN 346 D ASN 355 1_555 EA C1 NAG . D NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
#
_chem_comp.formula           'C14 H15 F3 N3 O6 P' 
_chem_comp.formula_weight    409.254 
_chem_comp.id                ZK1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '[[3,4-Dihydro-7-(4-morpholinyl)-2,3-dioxo-6-(trifluorom ethyl)-1(2H)-quinoxalinyl]methyl]phosphonic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAT OAA ZK1 doub 542 n n 
CAU OAB ZK1 doub 543 n n 
OAC PBA ZK1 doub 544 n n 
OAD PBA ZK1 sing 545 n n 
OAD HOAD ZK1 sing 546 n n 
PBA OAE ZK1 sing 547 n n 
OAE HOAE ZK1 sing 548 n n 
FAF CAZ ZK1 sing 549 n n 
CAZ FAG ZK1 sing 550 n n 
CAZ FAH ZK1 sing 551 n n 
CAR CAI ZK1 doub 552 n y 
CAI CAW ZK1 sing 553 n y 
CAI HAI ZK1 sing 554 n n 
CAS CAJ ZK1 doub 555 n y 
CAJ CAV ZK1 sing 556 n y 
CAJ HAJ ZK1 sing 557 n n 
CAK CAM ZK1 sing 558 n n 
CAK OAQ ZK1 sing 559 n n 
CAK HAK ZK1 sing 560 n n 
CAK HAKA ZK1 sing 561 n n 
OAQ CAL ZK1 sing 562 n n 
CAL CAN ZK1 sing 563 n n 
CAL HAL ZK1 sing 564 n n 
CAL HALA ZK1 sing 565 n n 
CAM NAX ZK1 sing 566 n n 
CAM HAM ZK1 sing 567 n n 
CAM HAMA ZK1 sing 568 n n 
NAX CAN ZK1 sing 569 n n 
CAN HAN ZK1 sing 570 n n 
CAN HANA ZK1 sing 571 n n 
PBA CAO ZK1 sing 572 n n 
NAY CAO ZK1 sing 573 n n 
CAO HAO ZK1 sing 574 n n 
CAO HAOA ZK1 sing 575 n n 
CAV NAP ZK1 sing 576 n n 
NAP CAT ZK1 sing 577 n n 
NAP HNAP ZK1 sing 578 n n 
NAX CAR ZK1 sing 579 n n 
CAS CAR ZK1 sing 580 n y 
CAZ CAS ZK1 sing 581 n n 
CAT CAU ZK1 sing 582 n n 
NAY CAU ZK1 sing 583 n n 
CAV CAW ZK1 doub 584 n y 
CAW NAY ZK1 sing 585 n n 
#
_atom_sites.entry_id                     7RZ4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZK1 A 1 1101 1101 ZK1 ZK1 . 
F 3 NAG A 1 1102 1102 NAG NAG . 
G 4 PCW A 1 1103 1105 PCW PCW . 
H 4 PCW A 1 1104 1106 PCW PCW . 
I 4 PCW A 1 1105 1107 PCW PCW . 
J 4 PCW A 1 1106 1108 PCW PCW . 
K 4 PCW A 1 1107 1109 PCW PCW . 
L 4 PCW A 1 1108 1110 PCW PCW . 
M 2 ZK1 B 1 1101 1101 ZK1 ZK1 . 
N 3 NAG B 1 1102 1102 NAG NAG . 
O 4 PCW B 1 1103 1105 PCW PCW . 
P 4 PCW B 1 1104 1106 PCW PCW . 
Q 4 PCW B 1 1105 1107 PCW PCW . 
R 4 PCW B 1 1106 1108 PCW PCW . 
S 4 PCW B 1 1107 1109 PCW PCW . 
T 4 PCW B 1 1108 1110 PCW PCW . 
U 2 ZK1 C 1 1101 1101 ZK1 ZK1 . 
V 3 NAG C 1 1102 1102 NAG NAG . 
W 4 PCW C 1 1103 1105 PCW PCW . 
X 4 PCW C 1 1104 1106 PCW PCW . 
Y 4 PCW C 1 1105 1107 PCW PCW . 
Z 4 PCW C 1 1106 1108 PCW PCW . 
AA 4 PCW C 1 1107 1109 PCW PCW . 
BA 4 PCW C 1 1108 1110 PCW PCW . 
CA 4 PCW D 1 1101 1110 PCW PCW . 
DA 2 ZK1 D 1 1102 1101 ZK1 ZK1 . 
EA 3 NAG D 1 1103 1102 NAG NAG . 
FA 4 PCW D 1 1104 1105 PCW PCW . 
GA 4 PCW D 1 1105 1106 PCW PCW . 
HA 4 PCW D 1 1106 1107 PCW PCW . 
IA 4 PCW D 1 1107 1108 PCW PCW . 
JA 4 PCW D 1 1108 1109 PCW PCW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA ZK1 . . . M 2 223.837 173.845 206.983 1 42.03 ? OAA ZK1 1101 B 1 
HETATM 2 O OAB ZK1 . . . M 2 225.762 172.729 205.295 1 42.03 ? OAB ZK1 1101 B 1 
HETATM 3 O OAC ZK1 . . . M 2 226.018 172.729 200.535 1 42.03 ? OAC ZK1 1101 B 1 
HETATM 4 O OAD ZK1 . . . M 2 224.249 172.524 202.236 1 42.03 ? OAD ZK1 1101 B 1 
HETATM 5 O OAE ZK1 . . . M 2 226.343 171.248 202.479 1 42.03 ? OAE ZK1 1101 B 1 
HETATM 6 F FAF ZK1 . . . M 2 222.032 179.276 201.535 1 42.03 ? FAF ZK1 1101 B 1 
HETATM 7 F FAG ZK1 . . . M 2 222.298 179.865 203.656 1 42.03 ? FAG ZK1 1101 B 1 
HETATM 8 F FAH ZK1 . . . M 2 223.826 180.435 202.158 1 42.03 ? FAH ZK1 1101 B 1 
HETATM 9 C CAI ZK1 . . . M 2 225.24 176.39 202.302 1 42.03 ? CAI ZK1 1101 B 1 
HETATM 10 C CAJ ZK1 . . . M 2 223.337 177.484 203.988 1 42.03 ? CAJ ZK1 1101 B 1 
HETATM 11 C CAK ZK1 . . . M 2 224.839 178.585 198.238 1 42.03 ? CAK ZK1 1101 B 1 
HETATM 12 C CAL ZK1 . . . M 2 226.684 179.518 199.325 1 42.03 ? CAL ZK1 1101 B 1 
HETATM 13 C CAM ZK1 . . . M 2 224.258 177.981 199.517 1 42.03 ? CAM ZK1 1101 B 1 
HETATM 14 C CAN ZK1 . . . M 2 226.285 178.982 200.7 1 42.03 ? CAN ZK1 1101 B 1 
HETATM 15 C CAO ZK1 . . . M 2 226.494 173.955 202.96 1 42.03 ? CAO ZK1 1101 B 1 
HETATM 16 N NAP ZK1 . . . M 2 223.618 175.639 205.467 1 42.03 ? NAP ZK1 1101 B 1 
HETATM 17 O OAQ ZK1 . . . M 2 226.241 178.68 198.285 1 42.03 ? OAQ ZK1 1101 B 1 
HETATM 18 C CAR ZK1 . . . M 2 224.635 177.593 201.963 1 42.03 ? CAR ZK1 1101 B 1 
HETATM 19 C CAS ZK1 . . . M 2 223.671 178.148 202.815 1 42.03 ? CAS ZK1 1101 B 1 
HETATM 20 C CAT ZK1 . . . M 2 224.193 174.494 205.794 1 42.03 ? CAT ZK1 1101 B 1 
HETATM 21 C CAU ZK1 . . . M 2 225.151 173.939 204.952 1 42.03 ? CAU ZK1 1101 B 1 
HETATM 22 C CAV ZK1 . . . M 2 223.956 176.265 204.326 1 42.03 ? CAV ZK1 1101 B 1 
HETATM 23 C CAW ZK1 . . . M 2 224.9 175.719 203.495 1 42.03 ? CAW ZK1 1101 B 1 
HETATM 24 N NAX ZK1 . . . M 2 225.053 178.212 200.71 1 42.03 ? NAX ZK1 1101 B 1 
HETATM 25 N NAY ZK1 . . . M 2 225.488 174.551 203.826 1 42.03 ? NAY ZK1 1101 B 1 
HETATM 26 C CAZ ZK1 . . . M 2 222.947 179.463 202.527 1 42.03 ? CAZ ZK1 1101 B 1 
HETATM 27 P PBA ZK1 . . . M 2 225.74 172.547 202.007 1 42.03 ? PBA ZK1 1101 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#