data_7RZ4
#
_model_server_result.job_id            BPHRsH2aPEE9l4k5X1w5CA 
_model_server_result.datetime_utc      '2024-11-21 13:41:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rz4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":1106}' 
#
_entry.id    7RZ4 
#
_exptl.entry_id    7RZ4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RZ4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RZ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 FA N N 
? 4 GA N N 
? 4 HA N N 
? 4 IA N N 
? 4 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 881 A CYS 890 1_555 A SG CYS 891 A CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 C SG CYS 881 C CYS 890 1_555 C SG CYS 891 C CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 346 A ASN 355 1_555 F C1 NAG . A NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 B ND2 ASN 346 B ASN 355 1_555 N C1 NAG . B NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale3 C ND2 ASN 346 C ASN 355 1_555 V C1 NAG . C NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale4 D ND2 ASN 346 D ASN 355 1_555 EA C1 NAG . D NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 265 n n 
C1 O3P PCW sing 266 n n 
C1 H11 PCW sing 267 n n 
C1 H12 PCW sing 268 n n 
C2 C3 PCW sing 269 n n 
C2 O2 PCW sing 270 n n 
C2 H2 PCW sing 271 n n 
C3 O3 PCW sing 272 n n 
C3 H31 PCW sing 273 n n 
C3 H32 PCW sing 274 n n 
C4 C5 PCW sing 275 n n 
C4 O4P PCW sing 276 n n 
C4 H41 PCW sing 277 n n 
C4 H42 PCW sing 278 n n 
C5 N PCW sing 279 n n 
C5 H51 PCW sing 280 n n 
C5 H52 PCW sing 281 n n 
C6 N PCW sing 282 n n 
C6 H61 PCW sing 283 n n 
C6 H62 PCW sing 284 n n 
C6 H63 PCW sing 285 n n 
C7 N PCW sing 286 n n 
C7 H71 PCW sing 287 n n 
C7 H72 PCW sing 288 n n 
C7 H73 PCW sing 289 n n 
C8 N PCW sing 290 n n 
C8 H81 PCW sing 291 n n 
C8 H82 PCW sing 292 n n 
C8 H83 PCW sing 293 n n 
C11 C12 PCW sing 294 n n 
C11 O3 PCW sing 295 n n 
C11 O11 PCW doub 296 n n 
C12 C13 PCW sing 297 n n 
C12 H121 PCW sing 298 n n 
C12 H122 PCW sing 299 n n 
C13 C14 PCW sing 300 n n 
C13 H131 PCW sing 301 n n 
C13 H132 PCW sing 302 n n 
C14 C15 PCW sing 303 n n 
C14 H141 PCW sing 304 n n 
C14 H142 PCW sing 305 n n 
C15 C16 PCW sing 306 n n 
C15 H151 PCW sing 307 n n 
C15 H152 PCW sing 308 n n 
C16 C17 PCW sing 309 n n 
C16 H161 PCW sing 310 n n 
C16 H162 PCW sing 311 n n 
C17 C18 PCW sing 312 n n 
C17 H171 PCW sing 313 n n 
C17 H172 PCW sing 314 n n 
C18 C19 PCW sing 315 n n 
C18 H181 PCW sing 316 n n 
C18 H182 PCW sing 317 n n 
C19 C20 PCW doub 318 z n 
C19 H19 PCW sing 319 n n 
C20 C21 PCW sing 320 n n 
C20 H20 PCW sing 321 n n 
C21 C22 PCW sing 322 n n 
C21 H211 PCW sing 323 n n 
C21 H212 PCW sing 324 n n 
C22 C23 PCW sing 325 n n 
C22 H221 PCW sing 326 n n 
C22 H222 PCW sing 327 n n 
C23 C24 PCW sing 328 n n 
C23 H231 PCW sing 329 n n 
C23 H232 PCW sing 330 n n 
C24 C25 PCW sing 331 n n 
C24 H241 PCW sing 332 n n 
C24 H242 PCW sing 333 n n 
C25 C26 PCW sing 334 n n 
C25 H251 PCW sing 335 n n 
C25 H252 PCW sing 336 n n 
C26 C27 PCW sing 337 n n 
C26 H261 PCW sing 338 n n 
C26 H262 PCW sing 339 n n 
C27 C28 PCW sing 340 n n 
C27 H271 PCW sing 341 n n 
C27 H272 PCW sing 342 n n 
C28 H281 PCW sing 343 n n 
C28 H282 PCW sing 344 n n 
C28 H283 PCW sing 345 n n 
C31 C32 PCW sing 346 n n 
C31 O2 PCW sing 347 n n 
C31 O31 PCW doub 348 n n 
C32 C33 PCW sing 349 n n 
C32 H321 PCW sing 350 n n 
C32 H322 PCW sing 351 n n 
C33 C34 PCW sing 352 n n 
C33 H331 PCW sing 353 n n 
C33 H332 PCW sing 354 n n 
C34 C35 PCW sing 355 n n 
C34 H341 PCW sing 356 n n 
C34 H342 PCW sing 357 n n 
C35 C36 PCW sing 358 n n 
C35 H351 PCW sing 359 n n 
C35 H352 PCW sing 360 n n 
C36 C37 PCW sing 361 n n 
C36 H361 PCW sing 362 n n 
C36 H362 PCW sing 363 n n 
C37 C38 PCW sing 364 n n 
C37 H371 PCW sing 365 n n 
C37 H372 PCW sing 366 n n 
C38 C39 PCW sing 367 n n 
C38 H381 PCW sing 368 n n 
C38 H382 PCW sing 369 n n 
C39 C40 PCW doub 370 z n 
C39 H39 PCW sing 371 n n 
C40 C41 PCW sing 372 n n 
C40 H40 PCW sing 373 n n 
C41 C42 PCW sing 374 n n 
C41 H411 PCW sing 375 n n 
C41 H412 PCW sing 376 n n 
C42 C43 PCW sing 377 n n 
C42 H421 PCW sing 378 n n 
C42 H422 PCW sing 379 n n 
C43 C44 PCW sing 380 n n 
C43 H431 PCW sing 381 n n 
C43 H432 PCW sing 382 n n 
C44 C45 PCW sing 383 n n 
C44 H441 PCW sing 384 n n 
C44 H442 PCW sing 385 n n 
C45 C46 PCW sing 386 n n 
C45 H451 PCW sing 387 n n 
C45 H452 PCW sing 388 n n 
C46 C47 PCW sing 389 n n 
C46 H461 PCW sing 390 n n 
C46 H462 PCW sing 391 n n 
C47 C48 PCW sing 392 n n 
C47 H471 PCW sing 393 n n 
C47 H472 PCW sing 394 n n 
C48 H481 PCW sing 395 n n 
C48 H482 PCW sing 396 n n 
C48 H483 PCW sing 397 n n 
O1P P PCW sing 398 n n 
O1P H1P PCW sing 399 n n 
O2P P PCW doub 400 n n 
O3P P PCW sing 401 n n 
O4P P PCW sing 402 n n 
#
_atom_sites.entry_id                     7RZ4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZK1 A 1 1101 1101 ZK1 ZK1 . 
F 3 NAG A 1 1102 1102 NAG NAG . 
G 4 PCW A 1 1103 1105 PCW PCW . 
H 4 PCW A 1 1104 1106 PCW PCW . 
I 4 PCW A 1 1105 1107 PCW PCW . 
J 4 PCW A 1 1106 1108 PCW PCW . 
K 4 PCW A 1 1107 1109 PCW PCW . 
L 4 PCW A 1 1108 1110 PCW PCW . 
M 2 ZK1 B 1 1101 1101 ZK1 ZK1 . 
N 3 NAG B 1 1102 1102 NAG NAG . 
O 4 PCW B 1 1103 1105 PCW PCW . 
P 4 PCW B 1 1104 1106 PCW PCW . 
Q 4 PCW B 1 1105 1107 PCW PCW . 
R 4 PCW B 1 1106 1108 PCW PCW . 
S 4 PCW B 1 1107 1109 PCW PCW . 
T 4 PCW B 1 1108 1110 PCW PCW . 
U 2 ZK1 C 1 1101 1101 ZK1 ZK1 . 
V 3 NAG C 1 1102 1102 NAG NAG . 
W 4 PCW C 1 1103 1105 PCW PCW . 
X 4 PCW C 1 1104 1106 PCW PCW . 
Y 4 PCW C 1 1105 1107 PCW PCW . 
Z 4 PCW C 1 1106 1108 PCW PCW . 
AA 4 PCW C 1 1107 1109 PCW PCW . 
BA 4 PCW C 1 1108 1110 PCW PCW . 
CA 4 PCW D 1 1101 1110 PCW PCW . 
DA 2 ZK1 D 1 1102 1101 ZK1 ZK1 . 
EA 3 NAG D 1 1103 1102 NAG NAG . 
FA 4 PCW D 1 1104 1105 PCW PCW . 
GA 4 PCW D 1 1105 1106 PCW PCW . 
HA 4 PCW D 1 1106 1107 PCW PCW . 
IA 4 PCW D 1 1107 1108 PCW PCW . 
JA 4 PCW D 1 1108 1109 PCW PCW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 PCW . . . Z 4 180.373 174.294 157.281 1 29.35 ? C13 PCW 1106 C 1 
HETATM 2 C C14 PCW . . . Z 4 180.496 174.396 155.731 1 29.35 ? C14 PCW 1106 C 1 
HETATM 3 C C15 PCW . . . Z 4 181.608 173.461 155.16 1 29.35 ? C15 PCW 1106 C 1 
HETATM 4 C C16 PCW . . . Z 4 181.663 173.505 153.604 1 29.35 ? C16 PCW 1106 C 1 
HETATM 5 C C17 PCW . . . Z 4 182.483 172.326 153.002 1 29.35 ? C17 PCW 1106 C 1 
HETATM 6 C C18 PCW . . . Z 4 182.894 172.6 151.525 1 29.35 ? C18 PCW 1106 C 1 
HETATM 7 C C19 PCW . . . Z 4 181.7 173.102 150.675 1 29.35 ? C19 PCW 1106 C 1 
HETATM 8 C C20 PCW . . . Z 4 181.766 173.128 149.329 1 29.35 ? C20 PCW 1106 C 1 
HETATM 9 C C21 PCW . . . Z 4 183.038 172.655 148.584 1 29.35 ? C21 PCW 1106 C 1 
HETATM 10 C C22 PCW . . . Z 4 182.798 171.344 147.781 1 29.35 ? C22 PCW 1106 C 1 
HETATM 11 C C23 PCW . . . Z 4 182.364 171.627 146.316 1 29.35 ? C23 PCW 1106 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#