data_7RZ5
#
_model_server_result.job_id            cunNPMrwTKJyOGfD1YgYnw 
_model_server_result.datetime_utc      '2024-11-18 02:43:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rz5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1104}' 
#
_entry.id    7RZ5 
#
_exptl.entry_id    7RZ5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RZ5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RZ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 881 A CYS 890 1_555 A SG CYS 891 A CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 C SG CYS 881 C CYS 890 1_555 C SG CYS 891 C CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 235 n n 
C1 O3P PCW sing 236 n n 
C1 H11 PCW sing 237 n n 
C1 H12 PCW sing 238 n n 
C2 C3 PCW sing 239 n n 
C2 O2 PCW sing 240 n n 
C2 H2 PCW sing 241 n n 
C3 O3 PCW sing 242 n n 
C3 H31 PCW sing 243 n n 
C3 H32 PCW sing 244 n n 
C4 C5 PCW sing 245 n n 
C4 O4P PCW sing 246 n n 
C4 H41 PCW sing 247 n n 
C4 H42 PCW sing 248 n n 
C5 N PCW sing 249 n n 
C5 H51 PCW sing 250 n n 
C5 H52 PCW sing 251 n n 
C6 N PCW sing 252 n n 
C6 H61 PCW sing 253 n n 
C6 H62 PCW sing 254 n n 
C6 H63 PCW sing 255 n n 
C7 N PCW sing 256 n n 
C7 H71 PCW sing 257 n n 
C7 H72 PCW sing 258 n n 
C7 H73 PCW sing 259 n n 
C8 N PCW sing 260 n n 
C8 H81 PCW sing 261 n n 
C8 H82 PCW sing 262 n n 
C8 H83 PCW sing 263 n n 
C11 C12 PCW sing 264 n n 
C11 O3 PCW sing 265 n n 
C11 O11 PCW doub 266 n n 
C12 C13 PCW sing 267 n n 
C12 H121 PCW sing 268 n n 
C12 H122 PCW sing 269 n n 
C13 C14 PCW sing 270 n n 
C13 H131 PCW sing 271 n n 
C13 H132 PCW sing 272 n n 
C14 C15 PCW sing 273 n n 
C14 H141 PCW sing 274 n n 
C14 H142 PCW sing 275 n n 
C15 C16 PCW sing 276 n n 
C15 H151 PCW sing 277 n n 
C15 H152 PCW sing 278 n n 
C16 C17 PCW sing 279 n n 
C16 H161 PCW sing 280 n n 
C16 H162 PCW sing 281 n n 
C17 C18 PCW sing 282 n n 
C17 H171 PCW sing 283 n n 
C17 H172 PCW sing 284 n n 
C18 C19 PCW sing 285 n n 
C18 H181 PCW sing 286 n n 
C18 H182 PCW sing 287 n n 
C19 C20 PCW doub 288 z n 
C19 H19 PCW sing 289 n n 
C20 C21 PCW sing 290 n n 
C20 H20 PCW sing 291 n n 
C21 C22 PCW sing 292 n n 
C21 H211 PCW sing 293 n n 
C21 H212 PCW sing 294 n n 
C22 C23 PCW sing 295 n n 
C22 H221 PCW sing 296 n n 
C22 H222 PCW sing 297 n n 
C23 C24 PCW sing 298 n n 
C23 H231 PCW sing 299 n n 
C23 H232 PCW sing 300 n n 
C24 C25 PCW sing 301 n n 
C24 H241 PCW sing 302 n n 
C24 H242 PCW sing 303 n n 
C25 C26 PCW sing 304 n n 
C25 H251 PCW sing 305 n n 
C25 H252 PCW sing 306 n n 
C26 C27 PCW sing 307 n n 
C26 H261 PCW sing 308 n n 
C26 H262 PCW sing 309 n n 
C27 C28 PCW sing 310 n n 
C27 H271 PCW sing 311 n n 
C27 H272 PCW sing 312 n n 
C28 H281 PCW sing 313 n n 
C28 H282 PCW sing 314 n n 
C28 H283 PCW sing 315 n n 
C31 C32 PCW sing 316 n n 
C31 O2 PCW sing 317 n n 
C31 O31 PCW doub 318 n n 
C32 C33 PCW sing 319 n n 
C32 H321 PCW sing 320 n n 
C32 H322 PCW sing 321 n n 
C33 C34 PCW sing 322 n n 
C33 H331 PCW sing 323 n n 
C33 H332 PCW sing 324 n n 
C34 C35 PCW sing 325 n n 
C34 H341 PCW sing 326 n n 
C34 H342 PCW sing 327 n n 
C35 C36 PCW sing 328 n n 
C35 H351 PCW sing 329 n n 
C35 H352 PCW sing 330 n n 
C36 C37 PCW sing 331 n n 
C36 H361 PCW sing 332 n n 
C36 H362 PCW sing 333 n n 
C37 C38 PCW sing 334 n n 
C37 H371 PCW sing 335 n n 
C37 H372 PCW sing 336 n n 
C38 C39 PCW sing 337 n n 
C38 H381 PCW sing 338 n n 
C38 H382 PCW sing 339 n n 
C39 C40 PCW doub 340 z n 
C39 H39 PCW sing 341 n n 
C40 C41 PCW sing 342 n n 
C40 H40 PCW sing 343 n n 
C41 C42 PCW sing 344 n n 
C41 H411 PCW sing 345 n n 
C41 H412 PCW sing 346 n n 
C42 C43 PCW sing 347 n n 
C42 H421 PCW sing 348 n n 
C42 H422 PCW sing 349 n n 
C43 C44 PCW sing 350 n n 
C43 H431 PCW sing 351 n n 
C43 H432 PCW sing 352 n n 
C44 C45 PCW sing 353 n n 
C44 H441 PCW sing 354 n n 
C44 H442 PCW sing 355 n n 
C45 C46 PCW sing 356 n n 
C45 H451 PCW sing 357 n n 
C45 H452 PCW sing 358 n n 
C46 C47 PCW sing 359 n n 
C46 H461 PCW sing 360 n n 
C46 H462 PCW sing 361 n n 
C47 C48 PCW sing 362 n n 
C47 H471 PCW sing 363 n n 
C47 H472 PCW sing 364 n n 
C48 H481 PCW sing 365 n n 
C48 H482 PCW sing 366 n n 
C48 H483 PCW sing 367 n n 
O1P P PCW sing 368 n n 
O1P H1P PCW sing 369 n n 
O2P P PCW doub 370 n n 
O3P P PCW sing 371 n n 
O4P P PCW sing 372 n n 
#
_atom_sites.entry_id                     7RZ5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZK1 A 1 1101 1101 ZK1 ZK1 . 
F 3 PCW A 1 1102 1105 PCW PCW . 
G 3 PCW A 1 1103 1106 PCW PCW . 
H 3 PCW A 1 1104 1107 PCW PCW . 
I 3 PCW A 1 1105 1108 PCW PCW . 
J 3 PCW A 1 1106 1109 PCW PCW . 
K 3 PCW A 1 1107 1109 PCW PCW . 
L 3 PCW A 1 1108 1110 PCW PCW . 
M 2 ZK1 B 1 1101 1101 ZK1 ZK1 . 
N 3 PCW B 1 1102 1105 PCW PCW . 
O 3 PCW B 1 1103 1106 PCW PCW . 
P 3 PCW B 1 1104 1107 PCW PCW . 
Q 3 PCW B 1 1105 1108 PCW PCW . 
R 3 PCW B 1 1106 1110 PCW PCW . 
S 2 ZK1 C 1 1101 1101 ZK1 ZK1 . 
T 3 PCW C 1 1102 1105 PCW PCW . 
U 3 PCW C 1 1103 1106 PCW PCW . 
V 3 PCW C 1 1104 1107 PCW PCW . 
W 3 PCW C 1 1105 1108 PCW PCW . 
X 3 PCW C 1 1106 1109 PCW PCW . 
Y 3 PCW C 1 1107 1110 PCW PCW . 
Z 3 PCW D 1 1101 1110 PCW PCW . 
AA 2 ZK1 D 1 1102 1101 ZK1 ZK1 . 
BA 3 PCW D 1 1103 1105 PCW PCW . 
CA 3 PCW D 1 1104 1106 PCW PCW . 
DA 3 PCW D 1 1105 1107 PCW PCW . 
EA 3 PCW D 1 1106 1108 PCW PCW . 
FA 3 PCW D 1 1107 1109 PCW PCW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCW . . . V 3 174.398 190.116 125.967 1 85.07 ? C1 PCW 1104 C 1 
HETATM 2 C C2 PCW . . . V 3 174.086 188.839 126.763 1 85.07 ? C2 PCW 1104 C 1 
HETATM 3 C C3 PCW . . . V 3 175.06 188.749 127.949 1 85.07 ? C3 PCW 1104 C 1 
HETATM 4 C C4 PCW . . . V 3 177.833 192.323 123.171 1 85.07 ? C4 PCW 1104 C 1 
HETATM 5 C C5 PCW . . . V 3 177.094 193.7 123.161 1 85.07 ? C5 PCW 1104 C 1 
HETATM 6 C C6 PCW . . . V 3 178.714 194.675 121.666 1 85.07 ? C6 PCW 1104 C 1 
HETATM 7 C C7 PCW . . . V 3 176.818 193.607 120.715 1 85.07 ? C7 PCW 1104 C 1 
HETATM 8 C C8 PCW . . . V 3 176.343 195.594 121.914 1 85.07 ? C8 PCW 1104 C 1 
HETATM 9 C C11 PCW . . . V 3 176.831 187.241 128.427 1 85.07 ? C11 PCW 1104 C 1 
HETATM 10 C C12 PCW . . . V 3 177.286 186.249 129.531 1 85.07 ? C12 PCW 1104 C 1 
HETATM 11 C C13 PCW . . . V 3 176.09 185.76 130.399 1 85.07 ? C13 PCW 1104 C 1 
HETATM 12 C C14 PCW . . . V 3 176.465 185.636 131.904 1 85.07 ? C14 PCW 1104 C 1 
HETATM 13 C C15 PCW . . . V 3 176.621 187.023 132.599 1 85.07 ? C15 PCW 1104 C 1 
HETATM 14 C C16 PCW . . . V 3 175.35 187.439 133.399 1 85.07 ? C16 PCW 1104 C 1 
HETATM 15 C C17 PCW . . . V 3 174.805 186.301 134.312 1 85.07 ? C17 PCW 1104 C 1 
HETATM 16 C C18 PCW . . . V 3 175.725 185.997 135.531 1 85.07 ? C18 PCW 1104 C 1 
HETATM 17 C C19 PCW . . . V 3 176.454 184.637 135.394 1 85.07 ? C19 PCW 1104 C 1 
HETATM 18 C C31 PCW . . . V 3 171.736 189.237 126.361 1 85.07 ? C31 PCW 1104 C 1 
HETATM 19 C C32 PCW . . . V 3 170.795 190.399 126.772 1 85.07 ? C32 PCW 1104 C 1 
HETATM 20 C C33 PCW . . . V 3 171.082 190.854 128.232 1 85.07 ? C33 PCW 1104 C 1 
HETATM 21 C C34 PCW . . . V 3 170.258 190.028 129.259 1 85.07 ? C34 PCW 1104 C 1 
HETATM 22 C C35 PCW . . . V 3 171.155 189.18 130.206 1 85.07 ? C35 PCW 1104 C 1 
HETATM 23 C C36 PCW . . . V 3 172.188 190.062 130.96 1 85.07 ? C36 PCW 1104 C 1 
HETATM 24 C C37 PCW . . . V 3 171.5 191.011 131.98 1 85.07 ? C37 PCW 1104 C 1 
HETATM 25 C C38 PCW . . . V 3 172.485 191.512 133.068 1 85.07 ? C38 PCW 1104 C 1 
HETATM 26 C C39 PCW . . . V 3 172.498 190.612 134.326 1 85.07 ? C39 PCW 1104 C 1 
HETATM 27 C C40 PCW . . . V 3 173.487 190.742 135.221 1 85.07 ? C40 PCW 1104 C 1 
HETATM 28 C C41 PCW . . . V 3 173.508 189.849 136.483 1 85.07 ? C41 PCW 1104 C 1 
HETATM 29 C C42 PCW . . . V 3 172.28 190.113 137.392 1 85.07 ? C42 PCW 1104 C 1 
HETATM 30 C C43 PCW . . . V 3 171.723 188.813 138.023 1 85.07 ? C43 PCW 1104 C 1 
HETATM 31 C C44 PCW . . . V 3 172.714 188.169 139.022 1 85.07 ? C44 PCW 1104 C 1 
HETATM 32 N N PCW . . . V 3 177.262 194.426 121.863 1 85.07 ? N PCW 1104 C 1 
HETATM 33 O O2 PCW . . . V 3 172.772 188.85 127.259 1 85.07 ? O2 PCW 1104 C 1 
HETATM 34 O O3 PCW . . . V 3 175.454 187.392 128.114 1 85.07 ? O3 PCW 1104 C 1 
HETATM 35 O O11 PCW . . . V 3 177.632 187.877 127.831 1 85.07 ? O11 PCW 1104 C 1 
HETATM 36 O O31 PCW . . . V 3 171.564 188.669 125.332 1 85.07 ? O31 PCW 1104 C 1 
HETATM 37 O O1P PCW . . . V 3 177.281 189.114 124.21 1 85.07 ? O1P PCW 1104 C 1 
HETATM 38 O O2P PCW . . . V 3 175.471 190.602 123.413 1 85.07 ? O2P PCW 1104 C 1 
HETATM 39 O O3P PCW . . . V 3 175.802 190.33 125.959 1 85.07 ? O3P PCW 1104 C 1 
HETATM 40 O O4P PCW . . . V 3 177.604 191.692 124.427 1 85.07 ? O4P PCW 1104 C 1 
HETATM 41 P P PCW . . . V 3 176.537 190.408 124.469 1 85.07 ? P PCW 1104 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           41 
#