data_7RZP # _model_server_result.job_id gTlZFz8kJBTJHwUFdWR0hQ _model_server_result.datetime_utc '2024-11-10 01:25:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7RZP # _exptl.entry_id 7RZP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7RZP _cell.length_a 56.17 _cell.length_b 56.17 _cell.length_c 122.49 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall 'P 31' _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C LYS 68 A LYS 65 1_555 A N MSE 69 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C MSE 69 A MSE 66 1_555 A N LYS 70 A LYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C GLY 75 A GLY 72 1_555 A N MSE 76 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 76 A MSE 73 1_555 A N ILE 77 A ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C VAL 105 A VAL 102 1_555 A N MSE 106 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C MSE 106 A MSE 103 1_555 A N ALA 107 A ALA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C ASP 130 A ASP 127 1_555 A N MSE 131 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 131 A MSE 128 1_555 A N LYS 132 A LYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C ASN 154 A ASN 151 1_555 A N MSE 155 A MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 A C MSE 155 A MSE 152 1_555 A N LEU 156 A LEU 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C LYS 176 A LYS 173 1_555 A N MSE 177 A MSE 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale13 A C MSE 177 A MSE 174 1_555 A N ASN 178 A ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale14 B C MSE 4 B MSE 1 1_555 B N THR 5 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C LYS 68 B LYS 65 1_555 B N MSE 69 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale16 B C MSE 69 B MSE 66 1_555 B N LYS 70 B LYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 B C GLY 75 B GLY 72 1_555 B N MSE 76 B MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale18 B C MSE 76 B MSE 73 1_555 B N ILE 77 B ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale19 B C VAL 105 B VAL 102 1_555 B N MSE 106 B MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C MSE 106 B MSE 103 1_555 B N ALA 107 B ALA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale21 B C ASP 130 B ASP 127 1_555 B N MSE 131 B MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 B C MSE 131 B MSE 128 1_555 B N LYS 132 B LYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale23 B C ASN 154 B ASN 151 1_555 B N MSE 155 B MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 B C MSE 155 B MSE 152 1_555 B N LEU 156 B LEU 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 B C LYS 176 B LYS 173 1_555 B N MSE 177 B MSE 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale26 B C MSE 177 B MSE 174 1_555 B N ASN 178 B ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 90 n n C1 C2 EDO sing 91 n n C1 H11 EDO sing 92 n n C1 H12 EDO sing 93 n n O1 HO1 EDO sing 94 n n C2 O2 EDO sing 95 n n C2 H21 EDO sing 96 n n C2 H22 EDO sing 97 n n O2 HO2 EDO sing 98 n n # _atom_sites.entry_id 7RZP _atom_sites.fract_transf_matrix[1][1] 0.017803 _atom_sites.fract_transf_matrix[1][2] 0.010279 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 225 FMN FMN . D 3 EDO A 1 302 227 EDO EDO . E 4 SO4 A 1 303 228 SO4 SO4 . F 5 ACY A 1 304 226 ACY ACY . G 5 ACY B 1 301 226 ACY ACY . H 2 FMN B 1 302 225 FMN FMN . I 3 EDO B 1 303 227 EDO EDO . J 6 HOH A 1 401 133 HOH HOH . J 6 HOH A 2 402 81 HOH HOH . J 6 HOH A 3 403 140 HOH HOH . J 6 HOH A 4 404 128 HOH HOH . J 6 HOH A 5 405 175 HOH HOH . J 6 HOH A 6 406 49 HOH HOH . J 6 HOH A 7 407 45 HOH HOH . J 6 HOH A 8 408 13 HOH HOH . J 6 HOH A 9 409 191 HOH HOH . J 6 HOH A 10 410 32 HOH HOH . J 6 HOH A 11 411 72 HOH HOH . J 6 HOH A 12 412 185 HOH HOH . J 6 HOH A 13 413 182 HOH HOH . J 6 HOH A 14 414 41 HOH HOH . J 6 HOH A 15 415 195 HOH HOH . J 6 HOH A 16 416 79 HOH HOH . J 6 HOH A 17 417 197 HOH HOH . J 6 HOH A 18 418 113 HOH HOH . J 6 HOH A 19 419 4 HOH HOH . J 6 HOH A 20 420 103 HOH HOH . J 6 HOH A 21 421 61 HOH HOH . J 6 HOH A 22 422 36 HOH HOH . J 6 HOH A 23 423 21 HOH HOH . J 6 HOH A 24 424 132 HOH HOH . J 6 HOH A 25 425 99 HOH HOH . J 6 HOH A 26 426 198 HOH HOH . J 6 HOH A 27 427 109 HOH HOH . J 6 HOH A 28 428 23 HOH HOH . J 6 HOH A 29 429 122 HOH HOH . J 6 HOH A 30 430 44 HOH HOH . J 6 HOH A 31 431 187 HOH HOH . J 6 HOH A 32 432 83 HOH HOH . J 6 HOH A 33 433 8 HOH HOH . J 6 HOH A 34 434 166 HOH HOH . J 6 HOH A 35 435 180 HOH HOH . J 6 HOH A 36 436 97 HOH HOH . J 6 HOH A 37 437 164 HOH HOH . J 6 HOH A 38 438 155 HOH HOH . J 6 HOH A 39 439 31 HOH HOH . J 6 HOH A 40 440 71 HOH HOH . J 6 HOH A 41 441 85 HOH HOH . J 6 HOH A 42 442 58 HOH HOH . J 6 HOH A 43 443 129 HOH HOH . J 6 HOH A 44 444 74 HOH HOH . J 6 HOH A 45 445 73 HOH HOH . J 6 HOH A 46 446 152 HOH HOH . J 6 HOH A 47 447 35 HOH HOH . J 6 HOH A 48 448 15 HOH HOH . J 6 HOH A 49 449 54 HOH HOH . J 6 HOH A 50 450 53 HOH HOH . J 6 HOH A 51 451 165 HOH HOH . J 6 HOH A 52 452 172 HOH HOH . J 6 HOH A 53 453 63 HOH HOH . J 6 HOH A 54 454 12 HOH HOH . J 6 HOH A 55 455 93 HOH HOH . J 6 HOH A 56 456 38 HOH HOH . J 6 HOH A 57 457 196 HOH HOH . J 6 HOH A 58 458 3 HOH HOH . J 6 HOH A 59 459 19 HOH HOH . J 6 HOH A 60 460 48 HOH HOH . J 6 HOH A 61 461 130 HOH HOH . J 6 HOH A 62 462 167 HOH HOH . J 6 HOH A 63 463 34 HOH HOH . J 6 HOH A 64 464 25 HOH HOH . J 6 HOH A 65 465 105 HOH HOH . J 6 HOH A 66 466 67 HOH HOH . J 6 HOH A 67 467 6 HOH HOH . J 6 HOH A 68 468 27 HOH HOH . J 6 HOH A 69 469 115 HOH HOH . J 6 HOH A 70 470 112 HOH HOH . J 6 HOH A 71 471 55 HOH HOH . J 6 HOH A 72 472 193 HOH HOH . J 6 HOH A 73 473 108 HOH HOH . J 6 HOH A 74 474 64 HOH HOH . J 6 HOH A 75 475 144 HOH HOH . J 6 HOH A 76 476 190 HOH HOH . J 6 HOH A 77 477 92 HOH HOH . J 6 HOH A 78 478 18 HOH HOH . J 6 HOH A 79 479 174 HOH HOH . J 6 HOH A 80 480 157 HOH HOH . J 6 HOH A 81 481 59 HOH HOH . J 6 HOH A 82 482 170 HOH HOH . J 6 HOH A 83 483 150 HOH HOH . J 6 HOH A 84 484 147 HOH HOH . J 6 HOH A 85 485 178 HOH HOH . J 6 HOH A 86 486 136 HOH HOH . J 6 HOH A 87 487 78 HOH HOH . J 6 HOH A 88 488 188 HOH HOH . J 6 HOH A 89 489 153 HOH HOH . J 6 HOH A 90 490 75 HOH HOH . K 6 HOH B 1 401 66 HOH HOH . K 6 HOH B 2 402 10 HOH HOH . K 6 HOH B 3 403 183 HOH HOH . K 6 HOH B 4 404 107 HOH HOH . K 6 HOH B 5 405 127 HOH HOH . K 6 HOH B 6 406 39 HOH HOH . K 6 HOH B 7 407 80 HOH HOH . K 6 HOH B 8 408 137 HOH HOH . K 6 HOH B 9 409 123 HOH HOH . K 6 HOH B 10 410 114 HOH HOH . K 6 HOH B 11 411 142 HOH HOH . K 6 HOH B 12 412 57 HOH HOH . K 6 HOH B 13 413 17 HOH HOH . K 6 HOH B 14 414 181 HOH HOH . K 6 HOH B 15 415 46 HOH HOH . K 6 HOH B 16 416 11 HOH HOH . K 6 HOH B 17 417 138 HOH HOH . K 6 HOH B 18 418 30 HOH HOH . K 6 HOH B 19 419 90 HOH HOH . K 6 HOH B 20 420 51 HOH HOH . K 6 HOH B 21 421 22 HOH HOH . K 6 HOH B 22 422 56 HOH HOH . K 6 HOH B 23 423 131 HOH HOH . K 6 HOH B 24 424 118 HOH HOH . K 6 HOH B 25 425 95 HOH HOH . K 6 HOH B 26 426 159 HOH HOH . K 6 HOH B 27 427 47 HOH HOH . K 6 HOH B 28 428 87 HOH HOH . K 6 HOH B 29 429 43 HOH HOH . K 6 HOH B 30 430 173 HOH HOH . K 6 HOH B 31 431 33 HOH HOH . K 6 HOH B 32 432 1 HOH HOH . K 6 HOH B 33 433 9 HOH HOH . K 6 HOH B 34 434 69 HOH HOH . K 6 HOH B 35 435 116 HOH HOH . K 6 HOH B 36 436 98 HOH HOH . K 6 HOH B 37 437 76 HOH HOH . K 6 HOH B 38 438 184 HOH HOH . K 6 HOH B 39 439 60 HOH HOH . K 6 HOH B 40 440 96 HOH HOH . K 6 HOH B 41 441 24 HOH HOH . K 6 HOH B 42 442 20 HOH HOH . K 6 HOH B 43 443 14 HOH HOH . K 6 HOH B 44 444 100 HOH HOH . K 6 HOH B 45 445 86 HOH HOH . K 6 HOH B 46 446 70 HOH HOH . K 6 HOH B 47 447 168 HOH HOH . K 6 HOH B 48 448 37 HOH HOH . K 6 HOH B 49 449 177 HOH HOH . K 6 HOH B 50 450 26 HOH HOH . K 6 HOH B 51 451 5 HOH HOH . K 6 HOH B 52 452 189 HOH HOH . K 6 HOH B 53 453 106 HOH HOH . K 6 HOH B 54 454 52 HOH HOH . K 6 HOH B 55 455 110 HOH HOH . K 6 HOH B 56 456 171 HOH HOH . K 6 HOH B 57 457 119 HOH HOH . K 6 HOH B 58 458 120 HOH HOH . K 6 HOH B 59 459 42 HOH HOH . K 6 HOH B 60 460 126 HOH HOH . K 6 HOH B 61 461 117 HOH HOH . K 6 HOH B 62 462 65 HOH HOH . K 6 HOH B 63 463 192 HOH HOH . K 6 HOH B 64 464 199 HOH HOH . K 6 HOH B 65 465 29 HOH HOH . K 6 HOH B 66 466 62 HOH HOH . K 6 HOH B 67 467 68 HOH HOH . K 6 HOH B 68 468 82 HOH HOH . K 6 HOH B 69 469 102 HOH HOH . K 6 HOH B 70 470 94 HOH HOH . K 6 HOH B 71 471 134 HOH HOH . K 6 HOH B 72 472 154 HOH HOH . K 6 HOH B 73 473 7 HOH HOH . K 6 HOH B 74 474 77 HOH HOH . K 6 HOH B 75 475 135 HOH HOH . K 6 HOH B 76 476 160 HOH HOH . K 6 HOH B 77 477 186 HOH HOH . K 6 HOH B 78 478 169 HOH HOH . K 6 HOH B 79 479 163 HOH HOH . K 6 HOH B 80 480 179 HOH HOH . K 6 HOH B 81 481 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 31.979 39.366 17.796 1 30.86 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . D 3 31.556 38.475 18.839 1 31.37 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . D 3 30.872 40.373 17.487 1 34.71 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . D 3 29.566 39.756 17.429 1 37.23 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #