data_7S04 # _model_server_result.job_id I2u9-WEgahkEnLvmLVb9tw _model_server_result.datetime_utc '2024-11-06 01:33:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7S04 # _exptl.entry_id 7S04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 197.126 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[ethanoyl(hydroxy)amino]propylphosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S04 _cell.length_a 66.572 _cell.length_b 118.251 _cell.length_c 53.911 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 159 A ASP 159 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A OE1 GLU 161 A GLU 161 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc3 A OE2 GLU 239 A GLU 239 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc4 B O1 F98 . A F98 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 B O2 F98 . A F98 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? # _chem_comp.formula 'C5 H12 N O5 P' _chem_comp.formula_weight 197.126 _chem_comp.id F98 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[ethanoyl(hydroxy)amino]propylphosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 F98 sing 83 n n C1 O1 F98 doub 84 n n C1 C11 F98 sing 85 n n N1 C2 F98 sing 86 n n N1 O2 F98 sing 87 n n C2 C3 F98 sing 88 n n C3 C4 F98 sing 89 n n C4 PA1 F98 sing 90 n n PA1 OP1 F98 sing 91 n n PA1 OP2 F98 doub 92 n n PA1 OP3 F98 sing 93 n n C2 H2 F98 sing 94 n n C2 H2A F98 sing 95 n n O2 HO2 F98 sing 96 n n C3 H3 F98 sing 97 n n C3 H3A F98 sing 98 n n C4 H4 F98 sing 99 n n C4 H4A F98 sing 100 n n C11 H11 F98 sing 101 n n C11 H11A F98 sing 102 n n C11 H11B F98 sing 103 n n OP1 HOP1 F98 sing 104 n n OP3 HOP3 F98 sing 105 n n # _atom_sites.entry_id 7S04 _atom_sites.fract_transf_matrix[1][1] 0.015021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F98 A 1 501 1 F98 F98 . C 3 MG A 1 502 1 MG MG . D 4 NDP A 1 503 2001 NDP NDP . E 5 HOH A 1 601 40 HOH HOH . E 5 HOH A 2 602 70 HOH HOH . E 5 HOH A 3 603 80 HOH HOH . E 5 HOH A 4 604 124 HOH HOH . E 5 HOH A 5 605 25 HOH HOH . E 5 HOH A 6 606 74 HOH HOH . E 5 HOH A 7 607 1 HOH HOH . E 5 HOH A 8 608 69 HOH HOH . E 5 HOH A 9 609 57 HOH HOH . E 5 HOH A 10 610 92 HOH HOH . E 5 HOH A 11 611 11 HOH HOH . E 5 HOH A 12 612 34 HOH HOH . E 5 HOH A 13 613 51 HOH HOH . E 5 HOH A 14 614 88 HOH HOH . E 5 HOH A 15 615 33 HOH HOH . E 5 HOH A 16 616 44 HOH HOH . E 5 HOH A 17 617 8 HOH HOH . E 5 HOH A 18 618 41 HOH HOH . E 5 HOH A 19 619 120 HOH HOH . E 5 HOH A 20 620 2 HOH HOH . E 5 HOH A 21 621 86 HOH HOH . E 5 HOH A 22 622 10 HOH HOH . E 5 HOH A 23 623 140 HOH HOH . E 5 HOH A 24 624 6 HOH HOH . E 5 HOH A 25 625 23 HOH HOH . E 5 HOH A 26 626 15 HOH HOH . E 5 HOH A 27 627 30 HOH HOH . E 5 HOH A 28 628 117 HOH HOH . E 5 HOH A 29 629 126 HOH HOH . E 5 HOH A 30 630 54 HOH HOH . E 5 HOH A 31 631 13 HOH HOH . E 5 HOH A 32 632 137 HOH HOH . E 5 HOH A 33 633 38 HOH HOH . E 5 HOH A 34 634 59 HOH HOH . E 5 HOH A 35 635 39 HOH HOH . E 5 HOH A 36 636 65 HOH HOH . E 5 HOH A 37 637 4 HOH HOH . E 5 HOH A 38 638 122 HOH HOH . E 5 HOH A 39 639 22 HOH HOH . E 5 HOH A 40 640 46 HOH HOH . E 5 HOH A 41 641 43 HOH HOH . E 5 HOH A 42 642 45 HOH HOH . E 5 HOH A 43 643 108 HOH HOH . E 5 HOH A 44 644 5 HOH HOH . E 5 HOH A 45 645 73 HOH HOH . E 5 HOH A 46 646 62 HOH HOH . E 5 HOH A 47 647 17 HOH HOH . E 5 HOH A 48 648 71 HOH HOH . E 5 HOH A 49 649 37 HOH HOH . E 5 HOH A 50 650 121 HOH HOH . E 5 HOH A 51 651 96 HOH HOH . E 5 HOH A 52 652 20 HOH HOH . E 5 HOH A 53 653 47 HOH HOH . E 5 HOH A 54 654 50 HOH HOH . E 5 HOH A 55 655 138 HOH HOH . E 5 HOH A 56 656 48 HOH HOH . E 5 HOH A 57 657 18 HOH HOH . E 5 HOH A 58 658 29 HOH HOH . E 5 HOH A 59 659 27 HOH HOH . E 5 HOH A 60 660 107 HOH HOH . E 5 HOH A 61 661 135 HOH HOH . E 5 HOH A 62 662 12 HOH HOH . E 5 HOH A 63 663 100 HOH HOH . E 5 HOH A 64 664 149 HOH HOH . E 5 HOH A 65 665 103 HOH HOH . E 5 HOH A 66 666 7 HOH HOH . E 5 HOH A 67 667 119 HOH HOH . E 5 HOH A 68 668 61 HOH HOH . E 5 HOH A 69 669 72 HOH HOH . E 5 HOH A 70 670 125 HOH HOH . E 5 HOH A 71 671 146 HOH HOH . E 5 HOH A 72 672 19 HOH HOH . E 5 HOH A 73 673 90 HOH HOH . E 5 HOH A 74 674 89 HOH HOH . E 5 HOH A 75 675 150 HOH HOH . E 5 HOH A 76 676 95 HOH HOH . E 5 HOH A 77 677 16 HOH HOH . E 5 HOH A 78 678 32 HOH HOH . E 5 HOH A 79 679 9 HOH HOH . E 5 HOH A 80 680 76 HOH HOH . E 5 HOH A 81 681 142 HOH HOH . E 5 HOH A 82 682 147 HOH HOH . E 5 HOH A 83 683 14 HOH HOH . E 5 HOH A 84 684 139 HOH HOH . E 5 HOH A 85 685 49 HOH HOH . E 5 HOH A 86 686 132 HOH HOH . E 5 HOH A 87 687 123 HOH HOH . E 5 HOH A 88 688 66 HOH HOH . E 5 HOH A 89 689 56 HOH HOH . E 5 HOH A 90 690 81 HOH HOH . E 5 HOH A 91 691 134 HOH HOH . E 5 HOH A 92 692 87 HOH HOH . E 5 HOH A 93 693 21 HOH HOH . E 5 HOH A 94 694 84 HOH HOH . E 5 HOH A 95 695 136 HOH HOH . E 5 HOH A 96 696 143 HOH HOH . E 5 HOH A 97 697 36 HOH HOH . E 5 HOH A 98 698 42 HOH HOH . E 5 HOH A 99 699 114 HOH HOH . E 5 HOH A 100 700 144 HOH HOH . E 5 HOH A 101 701 94 HOH HOH . E 5 HOH A 102 702 55 HOH HOH . E 5 HOH A 103 703 113 HOH HOH . E 5 HOH A 104 704 35 HOH HOH . E 5 HOH A 105 705 63 HOH HOH . E 5 HOH A 106 706 129 HOH HOH . E 5 HOH A 107 707 91 HOH HOH . E 5 HOH A 108 708 75 HOH HOH . E 5 HOH A 109 709 64 HOH HOH . E 5 HOH A 110 710 118 HOH HOH . E 5 HOH A 111 711 28 HOH HOH . E 5 HOH A 112 712 104 HOH HOH . E 5 HOH A 113 713 24 HOH HOH . E 5 HOH A 114 714 31 HOH HOH . E 5 HOH A 115 715 93 HOH HOH . E 5 HOH A 116 716 116 HOH HOH . E 5 HOH A 117 717 78 HOH HOH . E 5 HOH A 118 718 99 HOH HOH . E 5 HOH A 119 719 110 HOH HOH . E 5 HOH A 120 720 97 HOH HOH . E 5 HOH A 121 721 85 HOH HOH . E 5 HOH A 122 722 101 HOH HOH . E 5 HOH A 123 723 26 HOH HOH . E 5 HOH A 124 724 141 HOH HOH . E 5 HOH A 125 725 79 HOH HOH . E 5 HOH A 126 726 68 HOH HOH . E 5 HOH A 127 727 52 HOH HOH . E 5 HOH A 128 728 111 HOH HOH . E 5 HOH A 129 729 133 HOH HOH . E 5 HOH A 130 730 53 HOH HOH . E 5 HOH A 131 731 58 HOH HOH . E 5 HOH A 132 732 83 HOH HOH . E 5 HOH A 133 733 3 HOH HOH . E 5 HOH A 134 734 148 HOH HOH . E 5 HOH A 135 735 127 HOH HOH . E 5 HOH A 136 736 130 HOH HOH . E 5 HOH A 137 737 151 HOH HOH . E 5 HOH A 138 738 102 HOH HOH . E 5 HOH A 139 739 112 HOH HOH . E 5 HOH A 140 740 109 HOH HOH . E 5 HOH A 141 741 98 HOH HOH . E 5 HOH A 142 742 77 HOH HOH . E 5 HOH A 143 743 128 HOH HOH . E 5 HOH A 144 744 115 HOH HOH . E 5 HOH A 145 745 145 HOH HOH . E 5 HOH A 146 746 131 HOH HOH . E 5 HOH A 147 747 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F98 . . . B 2 -12.137 11.539 -21.423 1 16.6 ? C1 F98 501 A 1 HETATM 2 N N1 F98 . . . B 2 -12.219 12.77 -22.193 1 17.12 ? N1 F98 501 A 1 HETATM 3 O O1 F98 . . . B 2 -11.594 11.541 -20.37 1 13.69 ? O1 F98 501 A 1 HETATM 4 C C2 F98 . . . B 2 -12.878 12.787 -23.486 1 19.26 ? C2 F98 501 A 1 HETATM 5 O O2 F98 . . . B 2 -11.656 13.948 -21.68 1 14 ? O2 F98 501 A 1 HETATM 6 C C3 F98 . . . B 2 -11.982 13.456 -24.525 1 20.83 ? C3 F98 501 A 1 HETATM 7 C C4 F98 . . . B 2 -10.775 12.573 -24.837 1 21.63 ? C4 F98 501 A 1 HETATM 8 C C11 F98 . . . B 2 -12.742 10.241 -21.951 1 17.39 ? C11 F98 501 A 1 HETATM 9 P PA1 F98 . . . B 2 -9.634 13.512 -25.97 1 22.57 ? PA1 F98 501 A 1 HETATM 10 O OP1 F98 . . . B 2 -8.309 12.794 -26.072 1 22.53 ? OP1 F98 501 A 1 HETATM 11 O OP2 F98 . . . B 2 -10.253 13.613 -27.344 1 22.87 ? OP2 F98 501 A 1 HETATM 12 O OP3 F98 . . . B 2 -9.414 14.899 -25.422 1 22.91 ? OP3 F98 501 A 1 HETATM 13 H H2 F98 . . . B 2 -13.065 11.876 -23.763 1 23.12 ? H2 F98 501 A 1 HETATM 14 H H2A F98 . . . B 2 -13.71 13.28 -23.415 1 23.12 ? H2A F98 501 A 1 HETATM 15 H HO2 F98 . . . B 2 -12.024 14.621 -22.045 1 16.79 ? HO2 F98 501 A 1 HETATM 16 H H3 F98 . . . B 2 -12.49 13.601 -25.338 1 25 ? H3 F98 501 A 1 HETATM 17 H H3A F98 . . . B 2 -11.674 14.308 -24.179 1 25 ? H3A F98 501 A 1 HETATM 18 H H4 F98 . . . B 2 -11.07 11.758 -25.271 1 25.95 ? H4 F98 501 A 1 HETATM 19 H H4A F98 . . . B 2 -10.311 12.352 -24.014 1 25.95 ? H4A F98 501 A 1 HETATM 20 H H11 F98 . . . B 2 -12.706 9.562 -21.259 1 20.86 ? H11 F98 501 A 1 HETATM 21 H H11A F98 . . . B 2 -12.238 9.941 -22.724 1 20.86 ? H11A F98 501 A 1 HETATM 22 H H11B F98 . . . B 2 -13.665 10.395 -22.207 1 20.86 ? H11B F98 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #