data_7S0B # _model_server_result.job_id s0rP8YY9hli5VX7ZyUVkJg _model_server_result.datetime_utc '2024-10-19 20:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 7S0B # _exptl.entry_id 7S0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S0B _cell.length_a 102.297 _cell.length_b 153.656 _cell.length_c 96.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,H,I,J,N 1 1 C,D,E,G,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 148 A CYS 148 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 C SG CYS 148 C CYS 148 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 D SG CYS 23 D CYS 23 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 D SG CYS 134 D CYS 134 1_555 D SG CYS 194 D CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 D SG CYS 134 D CYS 134 1_555 D SG CYS 194 D CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 E SG CYS 18 E CYS 336 1_555 E SG CYS 43 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 E SG CYS 61 E CYS 379 1_555 E SG CYS 114 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 E SG CYS 73 E CYS 391 1_555 E SG CYS 207 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 E SG CYS 162 E CYS 480 1_555 E SG CYS 170 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 F SG CYS 18 F CYS 336 1_555 F SG CYS 43 F CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 F SG CYS 61 F CYS 379 1_555 F SG CYS 114 F CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf17 F SG CYS 73 F CYS 391 1_555 F SG CYS 207 F CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 162 F CYS 480 1_555 F SG CYS 170 F CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 E ND2 ASN 25 E ASN 343 1_555 G C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 F ND2 ASN 25 F ASN 343 1_555 H C1 NAG . F NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7S0B _atom_sites.fract_transf_matrix[1][1] 0.009775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG E 1 601 601 NAG NAG . H 4 NAG F 1 601 601 NAG NAG . I 5 HOH A 1 301 152 HOH HOH . I 5 HOH A 2 302 118 HOH HOH . I 5 HOH A 3 303 124 HOH HOH . I 5 HOH A 4 304 83 HOH HOH . I 5 HOH A 5 305 144 HOH HOH . I 5 HOH A 6 306 43 HOH HOH . I 5 HOH A 7 307 102 HOH HOH . I 5 HOH A 8 308 94 HOH HOH . I 5 HOH A 9 309 32 HOH HOH . I 5 HOH A 10 310 44 HOH HOH . I 5 HOH A 11 311 5 HOH HOH . I 5 HOH A 12 312 33 HOH HOH . I 5 HOH A 13 313 3 HOH HOH . I 5 HOH A 14 314 21 HOH HOH . I 5 HOH A 15 315 64 HOH HOH . I 5 HOH A 16 316 56 HOH HOH . I 5 HOH A 17 317 31 HOH HOH . I 5 HOH A 18 318 61 HOH HOH . I 5 HOH A 19 319 60 HOH HOH . I 5 HOH A 20 320 99 HOH HOH . J 5 HOH B 1 301 137 HOH HOH . J 5 HOH B 2 302 98 HOH HOH . J 5 HOH B 3 303 128 HOH HOH . J 5 HOH B 4 304 151 HOH HOH . J 5 HOH B 5 305 145 HOH HOH . J 5 HOH B 6 306 55 HOH HOH . J 5 HOH B 7 307 85 HOH HOH . J 5 HOH B 8 308 49 HOH HOH . J 5 HOH B 9 309 12 HOH HOH . J 5 HOH B 10 310 143 HOH HOH . J 5 HOH B 11 311 125 HOH HOH . J 5 HOH B 12 312 87 HOH HOH . J 5 HOH B 13 313 29 HOH HOH . J 5 HOH B 14 314 4 HOH HOH . J 5 HOH B 15 315 111 HOH HOH . J 5 HOH B 16 316 58 HOH HOH . J 5 HOH B 17 317 41 HOH HOH . J 5 HOH B 18 318 138 HOH HOH . J 5 HOH B 19 319 101 HOH HOH . J 5 HOH B 20 320 142 HOH HOH . J 5 HOH B 21 321 104 HOH HOH . J 5 HOH B 22 322 92 HOH HOH . K 5 HOH C 1 301 154 HOH HOH . K 5 HOH C 2 302 27 HOH HOH . K 5 HOH C 3 303 103 HOH HOH . K 5 HOH C 4 304 28 HOH HOH . K 5 HOH C 5 305 123 HOH HOH . K 5 HOH C 6 306 82 HOH HOH . K 5 HOH C 7 307 89 HOH HOH . K 5 HOH C 8 308 77 HOH HOH . K 5 HOH C 9 309 45 HOH HOH . K 5 HOH C 10 310 79 HOH HOH . K 5 HOH C 11 311 88 HOH HOH . L 5 HOH D 1 301 129 HOH HOH . L 5 HOH D 2 302 95 HOH HOH . L 5 HOH D 3 303 134 HOH HOH . L 5 HOH D 4 304 35 HOH HOH . L 5 HOH D 5 305 54 HOH HOH . L 5 HOH D 6 306 17 HOH HOH . L 5 HOH D 7 307 136 HOH HOH . L 5 HOH D 8 308 91 HOH HOH . L 5 HOH D 9 309 127 HOH HOH . L 5 HOH D 10 310 107 HOH HOH . L 5 HOH D 11 311 122 HOH HOH . L 5 HOH D 12 312 150 HOH HOH . L 5 HOH D 13 313 110 HOH HOH . L 5 HOH D 14 314 133 HOH HOH . L 5 HOH D 15 315 78 HOH HOH . L 5 HOH D 16 316 67 HOH HOH . L 5 HOH D 17 317 30 HOH HOH . L 5 HOH D 18 318 40 HOH HOH . L 5 HOH D 19 319 39 HOH HOH . L 5 HOH D 20 320 59 HOH HOH . L 5 HOH D 21 321 116 HOH HOH . M 5 HOH E 1 701 90 HOH HOH . M 5 HOH E 2 702 52 HOH HOH . M 5 HOH E 3 703 135 HOH HOH . M 5 HOH E 4 704 6 HOH HOH . M 5 HOH E 5 705 81 HOH HOH . M 5 HOH E 6 706 76 HOH HOH . M 5 HOH E 7 707 8 HOH HOH . M 5 HOH E 8 708 20 HOH HOH . M 5 HOH E 9 709 140 HOH HOH . M 5 HOH E 10 710 65 HOH HOH . M 5 HOH E 11 711 105 HOH HOH . M 5 HOH E 12 712 139 HOH HOH . M 5 HOH E 13 713 25 HOH HOH . M 5 HOH E 14 714 86 HOH HOH . M 5 HOH E 15 715 153 HOH HOH . M 5 HOH E 16 716 117 HOH HOH . M 5 HOH E 17 717 126 HOH HOH . M 5 HOH E 18 718 73 HOH HOH . M 5 HOH E 19 719 147 HOH HOH . M 5 HOH E 20 720 51 HOH HOH . M 5 HOH E 21 721 71 HOH HOH . M 5 HOH E 22 722 114 HOH HOH . M 5 HOH E 23 723 112 HOH HOH . M 5 HOH E 24 724 155 HOH HOH . N 5 HOH F 1 701 148 HOH HOH . N 5 HOH F 2 702 57 HOH HOH . N 5 HOH F 3 703 14 HOH HOH . N 5 HOH F 4 704 24 HOH HOH . N 5 HOH F 5 705 132 HOH HOH . N 5 HOH F 6 706 18 HOH HOH . N 5 HOH F 7 707 68 HOH HOH . N 5 HOH F 8 708 121 HOH HOH . N 5 HOH F 9 709 141 HOH HOH . N 5 HOH F 10 710 34 HOH HOH . N 5 HOH F 11 711 22 HOH HOH . N 5 HOH F 12 712 130 HOH HOH . N 5 HOH F 13 713 108 HOH HOH . N 5 HOH F 14 714 120 HOH HOH . N 5 HOH F 15 715 7 HOH HOH . N 5 HOH F 16 716 96 HOH HOH . N 5 HOH F 17 717 106 HOH HOH . N 5 HOH F 18 718 119 HOH HOH . N 5 HOH F 19 719 115 HOH HOH . N 5 HOH F 20 720 11 HOH HOH . N 5 HOH F 21 721 149 HOH HOH . N 5 HOH F 22 722 63 HOH HOH . N 5 HOH F 23 723 146 HOH HOH . N 5 HOH F 24 724 131 HOH HOH . N 5 HOH F 25 725 109 HOH HOH . N 5 HOH F 26 726 69 HOH HOH . N 5 HOH F 27 727 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 -30.447 -11.467 -59.611 0 62.46 ? C1 NAG 601 F 1 HETATM 2 C C2 NAG . . . H 4 -30.894 -12.929 -59.692 0 61.13 ? C2 NAG 601 F 1 HETATM 3 C C3 NAG . . . H 4 -31.386 -13.257 -61.101 0 60.21 ? C3 NAG 601 F 1 HETATM 4 C C4 NAG . . . H 4 -32.45 -12.261 -61.545 0 59.43 ? C4 NAG 601 F 1 HETATM 5 C C5 NAG . . . H 4 -31.943 -10.83 -61.382 0 60.18 ? C5 NAG 601 F 1 HETATM 6 C C6 NAG . . . H 4 -33 -9.792 -61.679 0 59.08 ? C6 NAG 601 F 1 HETATM 7 C C7 NAG . . . H 4 -30.014 -14.91 -58.542 0 60.54 ? C7 NAG 601 F 1 HETATM 8 C C8 NAG . . . H 4 -28.796 -15.729 -58.24 0 60.04 ? C8 NAG 601 F 1 HETATM 9 N N2 NAG . . . H 4 -29.82 -13.829 -59.304 0 60.97 ? N2 NAG 601 F 1 HETATM 10 O O3 NAG . . . H 4 -31.914 -14.578 -61.126 0 59.39 ? O3 NAG 601 F 1 HETATM 11 O O4 NAG . . . H 4 -32.789 -12.485 -62.909 0 58.73 ? O4 NAG 601 F 1 HETATM 12 O O5 NAG . . . H 4 -31.519 -10.613 -60.028 0 61.22 ? O5 NAG 601 F 1 HETATM 13 O O6 NAG . . . H 4 -33.895 -9.635 -60.587 0 59.06 ? O6 NAG 601 F 1 HETATM 14 O O7 NAG . . . H 4 -31.123 -15.212 -58.113 0 60.09 ? O7 NAG 601 F 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #