data_7S0K # _model_server_result.job_id Oq-khZRg91WUKaFQet1M-w _model_server_result.datetime_utc '2024-12-01 04:37:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1434}' # _entry.id 7S0K # _exptl.entry_id 7S0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S0K _cell.length_a 102.96 _cell.length_b 197.01 _cell.length_c 74.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1247 NAG 2 n B NAG 2 B 2 NAG A 1248 NAG 2 n B BMA 3 B 3 BMA A 1249 BMA 2 n B BMA 4 B 4 BMA A 1250 BMA 2 n B MAN 5 B 5 MAN A 1251 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 43 1_555 A SG CYS 27 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 125 A CYS 152 1_555 A SG CYS 159 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 136 A CYS 163 1_555 A SG CYS 195 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 160 A CYS 187 1_555 A SG CYS 351 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 162 A CYS 189 1_555 A SG CYS 181 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 224 A CYS 251 1_555 A SG CYS 248 A CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 A SG CYS 297 A CYS 324 1_555 A SG CYS 305 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 334 A CYS 361 1_555 A SG CYS 358 A CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 A SG CYS 475 A CYS 502 1_555 A SG CYS 513 A CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 220 A ASN 247 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 407 A ASN 434 1_555 C C1 NAG . A NAG 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 B O3 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale6 B O3 BMA . B BMA 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 298 n n C1 O1 NAG sing 299 n n C1 O5 NAG sing 300 n n C1 H1 NAG sing 301 n n C2 C3 NAG sing 302 n n C2 N2 NAG sing 303 n n C2 H2 NAG sing 304 n n C3 C4 NAG sing 305 n n C3 O3 NAG sing 306 n n C3 H3 NAG sing 307 n n C4 C5 NAG sing 308 n n C4 O4 NAG sing 309 n n C4 H4 NAG sing 310 n n C5 C6 NAG sing 311 n n C5 O5 NAG sing 312 n n C5 H5 NAG sing 313 n n C6 O6 NAG sing 314 n n C6 H61 NAG sing 315 n n C6 H62 NAG sing 316 n n C7 C8 NAG sing 317 n n C7 N2 NAG sing 318 n n C7 O7 NAG doub 319 n n C8 H81 NAG sing 320 n n C8 H82 NAG sing 321 n n C8 H83 NAG sing 322 n n N2 HN2 NAG sing 323 n n O1 HO1 NAG sing 324 n n O3 HO3 NAG sing 325 n n O4 HO4 NAG sing 326 n n O6 HO6 NAG sing 327 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7S0K _atom_sites.fract_transf_matrix[1][1] 0.009713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1434 1434 NAG NAG . D 4 GOL A 1 1435 1501 GOL GOL . E 4 GOL A 1 1436 1502 GOL GOL . F 4 GOL A 1 1437 1503 GOL GOL . G 5 PEG A 1 1438 1504 PEG PEG . H 5 PEG A 1 1439 1505 PEG PEG . I 6 HOH A 1 1601 1601 HOH HOH . I 6 HOH A 2 1602 1602 HOH HOH . I 6 HOH A 3 1603 1603 HOH HOH . I 6 HOH A 4 1604 1604 HOH HOH . I 6 HOH A 5 1605 1605 HOH HOH . I 6 HOH A 6 1606 1606 HOH HOH . I 6 HOH A 7 1607 1607 HOH HOH . I 6 HOH A 8 1608 1608 HOH HOH . I 6 HOH A 9 1609 1609 HOH HOH . I 6 HOH A 10 1610 1610 HOH HOH . I 6 HOH A 11 1611 1611 HOH HOH . I 6 HOH A 12 1612 1612 HOH HOH . I 6 HOH A 13 1613 1613 HOH HOH . I 6 HOH A 14 1614 1614 HOH HOH . I 6 HOH A 15 1615 1615 HOH HOH . I 6 HOH A 16 1616 1616 HOH HOH . I 6 HOH A 17 1617 1617 HOH HOH . I 6 HOH A 18 1618 1618 HOH HOH . I 6 HOH A 19 1619 1619 HOH HOH . I 6 HOH A 20 1620 1620 HOH HOH . I 6 HOH A 21 1621 1621 HOH HOH . I 6 HOH A 22 1622 1622 HOH HOH . I 6 HOH A 23 1623 1623 HOH HOH . I 6 HOH A 24 1624 1624 HOH HOH . I 6 HOH A 25 1625 1625 HOH HOH . I 6 HOH A 26 1626 1626 HOH HOH . I 6 HOH A 27 1627 1627 HOH HOH . I 6 HOH A 28 1628 1628 HOH HOH . I 6 HOH A 29 1629 1629 HOH HOH . I 6 HOH A 30 1630 1630 HOH HOH . I 6 HOH A 31 1631 1631 HOH HOH . I 6 HOH A 32 1632 1632 HOH HOH . I 6 HOH A 33 1633 1633 HOH HOH . I 6 HOH A 34 1634 1634 HOH HOH . I 6 HOH A 35 1635 1635 HOH HOH . I 6 HOH A 36 1636 1636 HOH HOH . I 6 HOH A 37 1637 1637 HOH HOH . I 6 HOH A 38 1638 1638 HOH HOH . I 6 HOH A 39 1639 1639 HOH HOH . I 6 HOH A 40 1640 1640 HOH HOH . I 6 HOH A 41 1641 1641 HOH HOH . I 6 HOH A 42 1642 1642 HOH HOH . I 6 HOH A 43 1643 1643 HOH HOH . I 6 HOH A 44 1644 1644 HOH HOH . I 6 HOH A 45 1645 1645 HOH HOH . I 6 HOH A 46 1646 1646 HOH HOH . I 6 HOH A 47 1647 1647 HOH HOH . I 6 HOH A 48 1648 1648 HOH HOH . I 6 HOH A 49 1649 1649 HOH HOH . I 6 HOH A 50 1650 1650 HOH HOH . I 6 HOH A 51 1651 1651 HOH HOH . I 6 HOH A 52 1652 1652 HOH HOH . I 6 HOH A 53 1653 1653 HOH HOH . I 6 HOH A 54 1654 1654 HOH HOH . I 6 HOH A 55 1655 1655 HOH HOH . I 6 HOH A 56 1656 1656 HOH HOH . I 6 HOH A 57 1657 1657 HOH HOH . I 6 HOH A 58 1658 1658 HOH HOH . I 6 HOH A 59 1659 1659 HOH HOH . I 6 HOH A 60 1660 1660 HOH HOH . I 6 HOH A 61 1661 1661 HOH HOH . I 6 HOH A 62 1662 1662 HOH HOH . I 6 HOH A 63 1663 1663 HOH HOH . I 6 HOH A 64 1664 1664 HOH HOH . I 6 HOH A 65 1665 1665 HOH HOH . I 6 HOH A 66 1666 1666 HOH HOH . I 6 HOH A 67 1667 1667 HOH HOH . I 6 HOH A 68 1668 1668 HOH HOH . I 6 HOH A 69 1669 1669 HOH HOH . I 6 HOH A 70 1670 1670 HOH HOH . I 6 HOH A 71 1671 1671 HOH HOH . I 6 HOH A 72 1672 1672 HOH HOH . I 6 HOH A 73 1673 1673 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -13.87 22.73 -8.446 1 141.5 ? C1 NAG 1434 A 1 HETATM 2 C C2 NAG . . . C 3 -13.764 24.162 -8.971 1 154.97 ? C2 NAG 1434 A 1 HETATM 3 C C3 NAG . . . C 3 -14.906 24.461 -9.938 1 158.31 ? C3 NAG 1434 A 1 HETATM 4 C C4 NAG . . . C 3 -14.958 23.415 -11.043 1 159.68 ? C4 NAG 1434 A 1 HETATM 5 C C5 NAG . . . C 3 -15.035 22.018 -10.435 1 155.91 ? C5 NAG 1434 A 1 HETATM 6 C C6 NAG . . . C 3 -14.968 20.918 -11.47 1 152.31 ? C6 NAG 1434 A 1 HETATM 7 C C7 NAG . . . C 3 -12.642 25.512 -7.251 1 161.86 ? C7 NAG 1434 A 1 HETATM 8 C C8 NAG . . . C 3 -12.824 26.511 -6.148 1 157.8 ? C8 NAG 1434 A 1 HETATM 9 N N2 NAG . . . C 3 -13.757 25.123 -7.879 1 160.87 ? N2 NAG 1434 A 1 HETATM 10 O O3 NAG . . . C 3 -14.722 25.756 -10.5 1 156.86 ? O3 NAG 1434 A 1 HETATM 11 O O4 NAG . . . C 3 -16.097 23.631 -11.869 1 162.03 ? O4 NAG 1434 A 1 HETATM 12 O O5 NAG . . . C 3 -13.928 21.814 -9.546 1 151.64 ? O5 NAG 1434 A 1 HETATM 13 O O6 NAG . . . C 3 -14.394 19.734 -10.934 1 151.06 ? O6 NAG 1434 A 1 HETATM 14 O O7 NAG . . . C 3 -11.536 25.073 -7.556 1 164.91 ? O7 NAG 1434 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #