data_7S0K # _model_server_result.job_id KaDdL5gDamNmXuFY3Dq2qQ _model_server_result.datetime_utc '2024-12-03 01:59:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1435}' # _entry.id 7S0K # _exptl.entry_id 7S0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S0K _cell.length_a 102.96 _cell.length_b 197.01 _cell.length_c 74.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1247 NAG 2 n B NAG 2 B 2 NAG A 1248 NAG 2 n B BMA 3 B 3 BMA A 1249 BMA 2 n B BMA 4 B 4 BMA A 1250 BMA 2 n B MAN 5 B 5 MAN A 1251 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 43 1_555 A SG CYS 27 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 125 A CYS 152 1_555 A SG CYS 159 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 136 A CYS 163 1_555 A SG CYS 195 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 160 A CYS 187 1_555 A SG CYS 351 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 162 A CYS 189 1_555 A SG CYS 181 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 224 A CYS 251 1_555 A SG CYS 248 A CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 A SG CYS 297 A CYS 324 1_555 A SG CYS 305 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 334 A CYS 361 1_555 A SG CYS 358 A CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 A SG CYS 475 A CYS 502 1_555 A SG CYS 513 A CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 220 A ASN 247 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 407 A ASN 434 1_555 C C1 NAG . A NAG 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 B O3 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale6 B O3 BMA . B BMA 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 7S0K _atom_sites.fract_transf_matrix[1][1] 0.009713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1434 1434 NAG NAG . D 4 GOL A 1 1435 1501 GOL GOL . E 4 GOL A 1 1436 1502 GOL GOL . F 4 GOL A 1 1437 1503 GOL GOL . G 5 PEG A 1 1438 1504 PEG PEG . H 5 PEG A 1 1439 1505 PEG PEG . I 6 HOH A 1 1601 1601 HOH HOH . I 6 HOH A 2 1602 1602 HOH HOH . I 6 HOH A 3 1603 1603 HOH HOH . I 6 HOH A 4 1604 1604 HOH HOH . I 6 HOH A 5 1605 1605 HOH HOH . I 6 HOH A 6 1606 1606 HOH HOH . I 6 HOH A 7 1607 1607 HOH HOH . I 6 HOH A 8 1608 1608 HOH HOH . I 6 HOH A 9 1609 1609 HOH HOH . I 6 HOH A 10 1610 1610 HOH HOH . I 6 HOH A 11 1611 1611 HOH HOH . I 6 HOH A 12 1612 1612 HOH HOH . I 6 HOH A 13 1613 1613 HOH HOH . I 6 HOH A 14 1614 1614 HOH HOH . I 6 HOH A 15 1615 1615 HOH HOH . I 6 HOH A 16 1616 1616 HOH HOH . I 6 HOH A 17 1617 1617 HOH HOH . I 6 HOH A 18 1618 1618 HOH HOH . I 6 HOH A 19 1619 1619 HOH HOH . I 6 HOH A 20 1620 1620 HOH HOH . I 6 HOH A 21 1621 1621 HOH HOH . I 6 HOH A 22 1622 1622 HOH HOH . I 6 HOH A 23 1623 1623 HOH HOH . I 6 HOH A 24 1624 1624 HOH HOH . I 6 HOH A 25 1625 1625 HOH HOH . I 6 HOH A 26 1626 1626 HOH HOH . I 6 HOH A 27 1627 1627 HOH HOH . I 6 HOH A 28 1628 1628 HOH HOH . I 6 HOH A 29 1629 1629 HOH HOH . I 6 HOH A 30 1630 1630 HOH HOH . I 6 HOH A 31 1631 1631 HOH HOH . I 6 HOH A 32 1632 1632 HOH HOH . I 6 HOH A 33 1633 1633 HOH HOH . I 6 HOH A 34 1634 1634 HOH HOH . I 6 HOH A 35 1635 1635 HOH HOH . I 6 HOH A 36 1636 1636 HOH HOH . I 6 HOH A 37 1637 1637 HOH HOH . I 6 HOH A 38 1638 1638 HOH HOH . I 6 HOH A 39 1639 1639 HOH HOH . I 6 HOH A 40 1640 1640 HOH HOH . I 6 HOH A 41 1641 1641 HOH HOH . I 6 HOH A 42 1642 1642 HOH HOH . I 6 HOH A 43 1643 1643 HOH HOH . I 6 HOH A 44 1644 1644 HOH HOH . I 6 HOH A 45 1645 1645 HOH HOH . I 6 HOH A 46 1646 1646 HOH HOH . I 6 HOH A 47 1647 1647 HOH HOH . I 6 HOH A 48 1648 1648 HOH HOH . I 6 HOH A 49 1649 1649 HOH HOH . I 6 HOH A 50 1650 1650 HOH HOH . I 6 HOH A 51 1651 1651 HOH HOH . I 6 HOH A 52 1652 1652 HOH HOH . I 6 HOH A 53 1653 1653 HOH HOH . I 6 HOH A 54 1654 1654 HOH HOH . I 6 HOH A 55 1655 1655 HOH HOH . I 6 HOH A 56 1656 1656 HOH HOH . I 6 HOH A 57 1657 1657 HOH HOH . I 6 HOH A 58 1658 1658 HOH HOH . I 6 HOH A 59 1659 1659 HOH HOH . I 6 HOH A 60 1660 1660 HOH HOH . I 6 HOH A 61 1661 1661 HOH HOH . I 6 HOH A 62 1662 1662 HOH HOH . I 6 HOH A 63 1663 1663 HOH HOH . I 6 HOH A 64 1664 1664 HOH HOH . I 6 HOH A 65 1665 1665 HOH HOH . I 6 HOH A 66 1666 1666 HOH HOH . I 6 HOH A 67 1667 1667 HOH HOH . I 6 HOH A 68 1668 1668 HOH HOH . I 6 HOH A 69 1669 1669 HOH HOH . I 6 HOH A 70 1670 1670 HOH HOH . I 6 HOH A 71 1671 1671 HOH HOH . I 6 HOH A 72 1672 1672 HOH HOH . I 6 HOH A 73 1673 1673 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 35.353 74.911 -14.24 1 94.8 ? C1 GOL 1435 A 1 HETATM 2 O O1 GOL . . . D 4 34.256 74.432 -14.957 1 95.76 ? O1 GOL 1435 A 1 HETATM 3 C C2 GOL . . . D 4 36.376 73.759 -14.161 1 99.21 ? C2 GOL 1435 A 1 HETATM 4 O O2 GOL . . . D 4 37.554 74.077 -14.815 1 102.25 ? O2 GOL 1435 A 1 HETATM 5 C C3 GOL . . . D 4 36.604 73.526 -12.648 1 105.79 ? C3 GOL 1435 A 1 HETATM 6 O O3 GOL . . . D 4 35.363 73.642 -12.021 1 108.56 ? O3 GOL 1435 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #