data_7S0U # _model_server_result.job_id 3QQpsZCgx_nMFInwCZLWzg _model_server_result.datetime_utc '2025-07-07 19:58:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":705}' # _entry.id 7S0U # _exptl.entry_id 7S0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S0U _cell.length_a 98.748 _cell.length_b 138.418 _cell.length_c 177.264 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 269 n n CS HCS1 MTA sing 270 n n CS HCS2 MTA sing 271 n n CS HCS3 MTA sing 272 n n S5' C5' MTA sing 273 n n C5' C4' MTA sing 274 n n C5' "H5'1" MTA sing 275 n n C5' "H5'2" MTA sing 276 n n C4' O4' MTA sing 277 n n C4' C3' MTA sing 278 n n C4' H4' MTA sing 279 n n O4' C1' MTA sing 280 n n C2' O2' MTA sing 281 n n C2' C3' MTA sing 282 n n C2' C1' MTA sing 283 n n C2' H2' MTA sing 284 n n O2' HO2' MTA sing 285 n n C3' O3' MTA sing 286 n n C3' H3' MTA sing 287 n n O3' H3T MTA sing 288 n n C1' N9 MTA sing 289 n n C1' H1' MTA sing 290 n n N9 C8 MTA sing 291 n y N9 C4 MTA sing 292 n y C8 N7 MTA doub 293 n y C8 H8 MTA sing 294 n n N7 C5 MTA sing 295 n y C5 C6 MTA sing 296 n y C5 C4 MTA doub 297 n y C6 N6 MTA sing 298 n n C6 N1 MTA doub 299 n y N6 H61 MTA sing 300 n n N6 H62 MTA sing 301 n n N1 C2 MTA sing 302 n y C2 N3 MTA doub 303 n y C2 H2 MTA sing 304 n n N3 C4 MTA sing 305 n y # _atom_sites.entry_id 7S0U _atom_sites.fract_transf_matrix[1][1] 0.010127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 701 650 CL CL . D 4 NA A 1 702 651 NA NA . E 5 EDO A 1 703 652 EDO EDO . F 6 81X A 1 704 801 81X LIG . G 7 MTA A 1 705 802 MTA MTA . H 8 HOH A 1 801 78 HOH HOH . H 8 HOH A 2 802 36 HOH HOH . H 8 HOH A 3 803 10 HOH HOH . H 8 HOH A 4 804 72 HOH HOH . H 8 HOH A 5 805 93 HOH HOH . H 8 HOH A 6 806 75 HOH HOH . H 8 HOH A 7 807 82 HOH HOH . H 8 HOH A 8 808 1 HOH HOH . H 8 HOH A 9 809 77 HOH HOH . H 8 HOH A 10 810 2 HOH HOH . H 8 HOH A 11 811 6 HOH HOH . H 8 HOH A 12 812 32 HOH HOH . H 8 HOH A 13 813 30 HOH HOH . H 8 HOH A 14 814 12 HOH HOH . H 8 HOH A 15 815 92 HOH HOH . H 8 HOH A 16 816 105 HOH HOH . H 8 HOH A 17 817 63 HOH HOH . H 8 HOH A 18 818 40 HOH HOH . H 8 HOH A 19 819 53 HOH HOH . H 8 HOH A 20 820 14 HOH HOH . H 8 HOH A 21 821 52 HOH HOH . H 8 HOH A 22 822 3 HOH HOH . H 8 HOH A 23 823 18 HOH HOH . H 8 HOH A 24 824 46 HOH HOH . H 8 HOH A 25 825 127 HOH HOH . H 8 HOH A 26 826 84 HOH HOH . H 8 HOH A 27 827 44 HOH HOH . H 8 HOH A 28 828 61 HOH HOH . H 8 HOH A 29 829 58 HOH HOH . H 8 HOH A 30 830 67 HOH HOH . H 8 HOH A 31 831 101 HOH HOH . H 8 HOH A 32 832 4 HOH HOH . H 8 HOH A 33 833 130 HOH HOH . H 8 HOH A 34 834 83 HOH HOH . H 8 HOH A 35 835 35 HOH HOH . H 8 HOH A 36 836 8 HOH HOH . H 8 HOH A 37 837 33 HOH HOH . H 8 HOH A 38 838 79 HOH HOH . H 8 HOH A 39 839 121 HOH HOH . H 8 HOH A 40 840 95 HOH HOH . H 8 HOH A 41 841 57 HOH HOH . H 8 HOH A 42 842 15 HOH HOH . H 8 HOH A 43 843 85 HOH HOH . H 8 HOH A 44 844 90 HOH HOH . H 8 HOH A 45 845 17 HOH HOH . H 8 HOH A 46 846 28 HOH HOH . H 8 HOH A 47 847 131 HOH HOH . H 8 HOH A 48 848 19 HOH HOH . H 8 HOH A 49 849 113 HOH HOH . H 8 HOH A 50 850 134 HOH HOH . H 8 HOH A 51 851 23 HOH HOH . H 8 HOH A 52 852 68 HOH HOH . H 8 HOH A 53 853 49 HOH HOH . H 8 HOH A 54 854 112 HOH HOH . H 8 HOH A 55 855 21 HOH HOH . H 8 HOH A 56 856 54 HOH HOH . H 8 HOH A 57 857 24 HOH HOH . H 8 HOH A 58 858 25 HOH HOH . H 8 HOH A 59 859 59 HOH HOH . H 8 HOH A 60 860 11 HOH HOH . H 8 HOH A 61 861 86 HOH HOH . H 8 HOH A 62 862 69 HOH HOH . H 8 HOH A 63 863 74 HOH HOH . H 8 HOH A 64 864 38 HOH HOH . H 8 HOH A 65 865 70 HOH HOH . H 8 HOH A 66 866 13 HOH HOH . H 8 HOH A 67 867 48 HOH HOH . H 8 HOH A 68 868 88 HOH HOH . H 8 HOH A 69 869 62 HOH HOH . H 8 HOH A 70 870 16 HOH HOH . H 8 HOH A 71 871 64 HOH HOH . H 8 HOH A 72 872 122 HOH HOH . H 8 HOH A 73 873 123 HOH HOH . H 8 HOH A 74 874 45 HOH HOH . H 8 HOH A 75 875 39 HOH HOH . H 8 HOH A 76 876 132 HOH HOH . H 8 HOH A 77 877 94 HOH HOH . H 8 HOH A 78 878 119 HOH HOH . H 8 HOH A 79 879 51 HOH HOH . H 8 HOH A 80 880 96 HOH HOH . H 8 HOH A 81 881 65 HOH HOH . H 8 HOH A 82 882 43 HOH HOH . H 8 HOH A 83 883 9 HOH HOH . H 8 HOH A 84 884 22 HOH HOH . H 8 HOH A 85 885 87 HOH HOH . H 8 HOH A 86 886 91 HOH HOH . H 8 HOH A 87 887 103 HOH HOH . H 8 HOH A 88 888 27 HOH HOH . H 8 HOH A 89 889 50 HOH HOH . H 8 HOH A 90 890 136 HOH HOH . H 8 HOH A 91 891 26 HOH HOH . H 8 HOH A 92 892 100 HOH HOH . H 8 HOH A 93 893 108 HOH HOH . H 8 HOH A 94 894 106 HOH HOH . H 8 HOH A 95 895 114 HOH HOH . H 8 HOH A 96 896 55 HOH HOH . H 8 HOH A 97 897 118 HOH HOH . H 8 HOH A 98 898 111 HOH HOH . H 8 HOH A 99 899 128 HOH HOH . H 8 HOH A 100 900 126 HOH HOH . H 8 HOH A 101 901 66 HOH HOH . H 8 HOH A 102 902 133 HOH HOH . H 8 HOH A 103 903 120 HOH HOH . H 8 HOH A 104 904 41 HOH HOH . H 8 HOH A 105 905 135 HOH HOH . H 8 HOH A 106 906 60 HOH HOH . H 8 HOH A 107 907 115 HOH HOH . H 8 HOH A 108 908 98 HOH HOH . H 8 HOH A 109 909 107 HOH HOH . H 8 HOH A 110 910 124 HOH HOH . H 8 HOH A 111 911 125 HOH HOH . H 8 HOH A 112 912 129 HOH HOH . H 8 HOH A 113 913 76 HOH HOH . I 8 HOH B 1 401 20 HOH HOH . I 8 HOH B 2 402 37 HOH HOH . I 8 HOH B 3 403 7 HOH HOH . I 8 HOH B 4 404 5 HOH HOH . I 8 HOH B 5 405 29 HOH HOH . I 8 HOH B 6 406 102 HOH HOH . I 8 HOH B 7 407 47 HOH HOH . I 8 HOH B 8 408 104 HOH HOH . I 8 HOH B 9 409 89 HOH HOH . I 8 HOH B 10 410 31 HOH HOH . I 8 HOH B 11 411 110 HOH HOH . I 8 HOH B 12 412 56 HOH HOH . I 8 HOH B 13 413 42 HOH HOH . I 8 HOH B 14 414 71 HOH HOH . I 8 HOH B 15 415 99 HOH HOH . I 8 HOH B 16 416 109 HOH HOH . I 8 HOH B 17 417 117 HOH HOH . I 8 HOH B 18 418 81 HOH HOH . I 8 HOH B 19 419 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . G 7 -28.375 -39.372 -7.03 1 35.87 ? CS MTA 705 A 1 HETATM 2 S S5' MTA . . . G 7 -29.72 -40.47 -6.576 1 58.31 ? S5' MTA 705 A 1 HETATM 3 C C5' MTA . . . G 7 -31.038 -39.291 -6.178 1 35.7 ? C5' MTA 705 A 1 HETATM 4 C C4' MTA . . . G 7 -30.71 -38.368 -5.026 1 39.19 ? C4' MTA 705 A 1 HETATM 5 O O4' MTA . . . G 7 -31.717 -37.328 -4.965 1 36.85 ? O4' MTA 705 A 1 HETATM 6 C C2' MTA . . . G 7 -32.121 -38.701 -3.107 1 36.24 ? C2' MTA 705 A 1 HETATM 7 O O2' MTA . . . G 7 -32.187 -38.78 -1.699 1 44.89 ? O2' MTA 705 A 1 HETATM 8 C C3' MTA . . . G 7 -30.716 -38.999 -3.637 1 36.27 ? C3' MTA 705 A 1 HETATM 9 O O3' MTA . . . G 7 -29.772 -38.309 -2.821 1 39.69 ? O3' MTA 705 A 1 HETATM 10 C C1' MTA . . . G 7 -32.329 -37.314 -3.694 1 34.96 ? C1' MTA 705 A 1 HETATM 11 N N9 MTA . . . G 7 -33.745 -36.997 -3.846 1 32.82 ? N9 MTA 705 A 1 HETATM 12 C C8 MTA . . . G 7 -34.699 -37.732 -4.508 1 32.27 ? C8 MTA 705 A 1 HETATM 13 N N7 MTA . . . G 7 -35.892 -37.193 -4.473 1 33.79 ? N7 MTA 705 A 1 HETATM 14 C C5 MTA . . . G 7 -35.72 -36.036 -3.728 1 33.93 ? C5 MTA 705 A 1 HETATM 15 C C6 MTA . . . G 7 -36.616 -35.026 -3.332 1 32.89 ? C6 MTA 705 A 1 HETATM 16 N N6 MTA . . . G 7 -37.909 -35.024 -3.643 1 34.79 ? N6 MTA 705 A 1 HETATM 17 N N1 MTA . . . G 7 -36.121 -34.009 -2.588 1 35.69 ? N1 MTA 705 A 1 HETATM 18 C C2 MTA . . . G 7 -34.819 -34.021 -2.279 1 37.42 ? C2 MTA 705 A 1 HETATM 19 N N3 MTA . . . G 7 -33.884 -34.911 -2.601 1 36.65 ? N3 MTA 705 A 1 HETATM 20 C C4 MTA . . . G 7 -34.403 -35.907 -3.333 1 32.96 ? C4 MTA 705 A 1 HETATM 21 H HCS1 MTA . . . G 7 -27.594 -39.891 -7.258 1 43.49 ? HCS1 MTA 705 A 1 HETATM 22 H HCS2 MTA . . . G 7 -28.166 -38.79 -6.289 1 43.49 ? HCS2 MTA 705 A 1 HETATM 23 H HCS3 MTA . . . G 7 -28.634 -38.837 -7.791 1 43.49 ? HCS3 MTA 705 A 1 HETATM 24 H "H5'1" MTA . . . G 7 -31.829 -39.778 -5.961 1 43.27 ? "H5'1" MTA 705 A 1 HETATM 25 H "H5'2" MTA . . . G 7 -31.218 -38.76 -6.95 1 43.27 ? "H5'2" MTA 705 A 1 HETATM 26 H H4' MTA . . . G 7 -29.817 -37.974 -5.187 1 47.47 ? H4' MTA 705 A 1 HETATM 27 H H2' MTA . . . G 7 -32.813 -39.309 -3.479 1 43.93 ? H2' MTA 705 A 1 HETATM 28 H HO2' MTA . . . G 7 -32.979 -38.607 -1.448 1 54.3 ? HO2' MTA 705 A 1 HETATM 29 H H3' MTA . . . G 7 -30.558 -39.976 -3.701 1 43.96 ? H3' MTA 705 A 1 HETATM 30 H H3T MTA . . . G 7 -29.869 -38.565 -2.018 1 48.06 ? H3T MTA 705 A 1 HETATM 31 H H1' MTA . . . G 7 -31.883 -36.634 -3.139 1 42.39 ? H1' MTA 705 A 1 HETATM 32 H H8 MTA . . . G 7 -34.511 -38.545 -4.944 1 39.16 ? H8 MTA 705 A 1 HETATM 33 H H61 MTA . . . G 7 -38.421 -34.367 -3.368 1 42.19 ? H61 MTA 705 A 1 HETATM 34 H H62 MTA . . . G 7 -38.242 -35.679 -4.121 1 42.19 ? H62 MTA 705 A 1 HETATM 35 H H2 MTA . . . G 7 -34.521 -33.292 -1.756 1 45.34 ? H2 MTA 705 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #