data_7S11 # _model_server_result.job_id hHRf2e_W2GD8mWq7eDOanw _model_server_result.datetime_utc '2024-11-22 06:50:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":201}' # _entry.id 7S11 # _exptl.entry_id 7S11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S11 _cell.length_a 124.93 _cell.length_b 154.89 _cell.length_c 306 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 ? trimeric 3 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,M,N,O 1 1 D,E,F,P,Q,R 2 1 G,H,I,S 3 1 J,K,L,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 C CYS 45 1_555 A SG CYS 95 C CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf2 A SG CYS 56 C CYS 79 1_555 A SG CYS 62 C CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 B SG CYS 145 H CYS 140 1_555 B SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 22 L CYS 23 1_555 C SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 C SG CYS 136 L CYS 134 1_555 C SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 D SG CYS 22 D CYS 45 1_555 D SG CYS 95 D CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf8 D SG CYS 56 D CYS 79 1_555 D SG CYS 62 D CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 E SG CYS 22 I CYS 22 1_555 E SG CYS 95 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf10 E SG CYS 145 I CYS 140 1_555 E SG CYS 201 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 F SG CYS 22 M CYS 23 1_555 F SG CYS 90 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 F SG CYS 136 M CYS 134 1_555 F SG CYS 196 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf13 G SG CYS 22 E CYS 45 1_555 G SG CYS 95 E CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf14 G SG CYS 56 E CYS 79 1_555 G SG CYS 62 E CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 H SG CYS 22 J CYS 22 1_555 H SG CYS 95 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf16 H SG CYS 145 J CYS 140 1_555 H SG CYS 201 J CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 I SG CYS 22 N CYS 23 1_555 I SG CYS 90 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf18 I SG CYS 136 N CYS 134 1_555 I SG CYS 196 N CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf19 J SG CYS 22 F CYS 45 1_555 J SG CYS 95 F CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf20 J SG CYS 56 F CYS 79 1_555 J SG CYS 62 F CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf21 K SG CYS 22 K CYS 22 1_555 K SG CYS 95 K CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf22 K SG CYS 145 K CYS 140 1_555 K SG CYS 201 K CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf23 L SG CYS 22 O CYS 23 1_555 L SG CYS 90 O CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf24 L SG CYS 136 O CYS 134 1_555 L SG CYS 196 O CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A ND2 ASN 84 C ASN 107 1_555 M C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 C C PCA 1 L PCA 1 1_555 C N ALA 2 L ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 D ND2 ASN 84 D ASN 107 1_555 P C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 F C PCA 1 M PCA 1 1_555 F N ALA 2 M ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 I C PCA 1 N PCA 1 1_555 I N ALA 2 N ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 L C PCA 1 O PCA 1 1_555 L N ALA 2 O ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7S11 _atom_sites.fract_transf_matrix[1][1] 0.008004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 NAG C 1 201 201 NAG NAG . N 5 SO4 C 1 202 2 SO4 SO4 . O 5 SO4 L 1 301 9 SO4 SO4 . P 4 NAG D 1 201 201 NAG NAG . Q 5 SO4 D 1 202 10 SO4 SO4 . R 5 SO4 D 1 203 14 SO4 SO4 . S 5 SO4 N 1 301 15 SO4 SO4 . T 5 SO4 K 1 301 27 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 4 55.508 7.551 30.555 1 63.43 ? C1 NAG 201 D 1 HETATM 2 C C2 NAG . . . P 4 56.833 8.083 30.016 1 67.65 ? C2 NAG 201 D 1 HETATM 3 C C3 NAG . . . P 4 57.838 6.941 29.883 1 70.12 ? C3 NAG 201 D 1 HETATM 4 C C4 NAG . . . P 4 57.945 6.134 31.173 1 69.62 ? C4 NAG 201 D 1 HETATM 5 C C5 NAG . . . P 4 56.569 5.753 31.719 1 68.2 ? C5 NAG 201 D 1 HETATM 6 C C6 NAG . . . P 4 56.629 5.174 33.117 1 69.05 ? C6 NAG 201 D 1 HETATM 7 C C7 NAG . . . P 4 56.395 10.041 28.608 1 72.59 ? C7 NAG 201 D 1 HETATM 8 C C8 NAG . . . P 4 56.262 10.552 27.203 1 73.3 ? C8 NAG 201 D 1 HETATM 9 N N2 NAG . . . P 4 56.659 8.74 28.733 1 69.76 ? N2 NAG 201 D 1 HETATM 10 O O3 NAG . . . P 4 59.107 7.483 29.531 1 72.41 ? O3 NAG 201 D 1 HETATM 11 O O4 NAG . . . P 4 58.651 4.927 30.905 1 70.53 ? O4 NAG 201 D 1 HETATM 12 O O5 NAG . . . P 4 55.728 6.913 31.797 1 66.03 ? O5 NAG 201 D 1 HETATM 13 O O6 NAG . . . P 4 56.879 6.189 34.082 1 70.13 ? O6 NAG 201 D 1 HETATM 14 O O7 NAG . . . P 4 56.262 10.771 29.585 1 74.08 ? O7 NAG 201 D 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #