data_7S13
#
_model_server_result.job_id            YAVlNoM8jHOkdWjc4AZoVw 
_model_server_result.datetime_utc      '2024-11-29 01:39:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7s13 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    7S13 
#
_exptl.entry_id    7S13 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7S13 
_cell.length_a            52.03 
_cell.length_b            131.25 
_cell.length_c            186.87 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7S13 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,L,M,N,Q 1 1 
C,D,E,J,K,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 A SG CYS 143 H CYS 140 1_555 A SG CYS 198 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
disulf ? disulf3 B SG CYS 21 L CYS 23 1_555 B SG CYS 86 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 B SG CYS 135 L CYS 135 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 C SG CYS 22 I CYS 22 1_555 C SG CYS 95 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf6 C SG CYS 143 I CYS 140 1_555 C SG CYS 198 I CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 21 M CYS 23 1_555 D SG CYS 86 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 D SG CYS 135 M CYS 135 1_555 D SG CYS 194 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf9 E SG CYS 25 C CYS 45 1_555 E SG CYS 98 C CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf10 E SG CYS 59 C CYS 79 1_555 E SG CYS 65 C CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf11 F SG CYS 25 D CYS 45 1_555 F SG CYS 98 D CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf12 F SG CYS 59 D CYS 79 1_555 F SG CYS 65 D CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
covale ? covale1 A C PCA 1 H PCA 1 1_555 A N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 C C PCA 1 I PCA 1 1_555 C N VAL 2 I VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 E ND2 ASN 87 C ASN 107 1_555 K C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale4 F ND2 ASN 87 D ASN 107 1_555 L C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 263 n n 
C1 O1 NAG sing 264 n n 
C1 O5 NAG sing 265 n n 
C1 H1 NAG sing 266 n n 
C2 C3 NAG sing 267 n n 
C2 N2 NAG sing 268 n n 
C2 H2 NAG sing 269 n n 
C3 C4 NAG sing 270 n n 
C3 O3 NAG sing 271 n n 
C3 H3 NAG sing 272 n n 
C4 C5 NAG sing 273 n n 
C4 O4 NAG sing 274 n n 
C4 H4 NAG sing 275 n n 
C5 C6 NAG sing 276 n n 
C5 O5 NAG sing 277 n n 
C5 H5 NAG sing 278 n n 
C6 O6 NAG sing 279 n n 
C6 H61 NAG sing 280 n n 
C6 H62 NAG sing 281 n n 
C7 C8 NAG sing 282 n n 
C7 N2 NAG sing 283 n n 
C7 O7 NAG doub 284 n n 
C8 H81 NAG sing 285 n n 
C8 H82 NAG sing 286 n n 
C8 H83 NAG sing 287 n n 
N2 HN2 NAG sing 288 n n 
O1 HO1 NAG sing 289 n n 
O3 HO3 NAG sing 290 n n 
O4 HO4 NAG sing 291 n n 
O6 HO6 NAG sing 292 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7S13 
_atom_sites.fract_transf_matrix[1][1]    0.01922 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007619 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005351 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 EDO H 1 301 2 EDO EDO . 
H 4 EDO L 1 301 1 EDO EDO . 
I 4 EDO L 1 302 3 EDO EDO . 
J 5 FLC I 1 301 1 FLC FLC . 
K 6 NAG C 1 201 201 NAG NAG . 
L 6 NAG D 1 201 201 NAG NAG . 
M 7 HOH H 1 401 1 HOH HOH . 
M 7 HOH H 2 402 25 HOH HOH . 
M 7 HOH H 3 403 5 HOH HOH . 
M 7 HOH H 4 404 27 HOH HOH . 
M 7 HOH H 5 405 18 HOH HOH . 
M 7 HOH H 6 406 36 HOH HOH . 
M 7 HOH H 7 407 4 HOH HOH . 
M 7 HOH H 8 408 31 HOH HOH . 
M 7 HOH H 9 409 37 HOH HOH . 
M 7 HOH H 10 410 17 HOH HOH . 
M 7 HOH H 11 411 2 HOH HOH . 
M 7 HOH H 12 412 12 HOH HOH . 
M 7 HOH H 13 413 3 HOH HOH . 
M 7 HOH H 14 414 13 HOH HOH . 
M 7 HOH H 15 415 32 HOH HOH . 
N 7 HOH L 1 401 7 HOH HOH . 
N 7 HOH L 2 402 8 HOH HOH . 
N 7 HOH L 3 403 28 HOH HOH . 
N 7 HOH L 4 404 26 HOH HOH . 
N 7 HOH L 5 405 14 HOH HOH . 
N 7 HOH L 6 406 29 HOH HOH . 
N 7 HOH L 7 407 10 HOH HOH . 
N 7 HOH L 8 408 11 HOH HOH . 
N 7 HOH L 9 409 35 HOH HOH . 
N 7 HOH L 10 410 16 HOH HOH . 
N 7 HOH L 11 411 6 HOH HOH . 
N 7 HOH L 12 412 30 HOH HOH . 
N 7 HOH L 13 413 9 HOH HOH . 
N 7 HOH L 14 414 15 HOH HOH . 
O 7 HOH I 1 401 33 HOH HOH . 
O 7 HOH I 2 402 21 HOH HOH . 
P 7 HOH C 1 301 22 HOH HOH . 
P 7 HOH C 2 302 23 HOH HOH . 
P 7 HOH C 3 303 20 HOH HOH . 
P 7 HOH C 4 304 34 HOH HOH . 
P 7 HOH C 5 305 19 HOH HOH . 
Q 7 HOH D 1 301 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 6 95.266 -26.729 44.347 1 83.68 ? C1 NAG 201 D 1 
HETATM 2 C C2 NAG . . . L 6 95.201 -28.01 45.197 1 84.65 ? C2 NAG 201 D 1 
HETATM 3 C C3 NAG . . . L 6 96.596 -28.587 45.453 1 89.28 ? C3 NAG 201 D 1 
HETATM 4 C C4 NAG . . . L 6 97.416 -28.658 44.174 1 91.27 ? C4 NAG 201 D 1 
HETATM 5 C C5 NAG . . . L 6 97.411 -27.293 43.5 1 87.39 ? C5 NAG 201 D 1 
HETATM 6 C C6 NAG . . . L 6 98.17 -27.241 42.196 1 82.27 ? C6 NAG 201 D 1 
HETATM 7 C C7 NAG . . . L 6 93.301 -28.129 46.758 1 91.89 ? C7 NAG 201 D 1 
HETATM 8 C C8 NAG . . . L 6 92.785 -27.724 48.107 1 90.61 ? C8 NAG 201 D 1 
HETATM 9 N N2 NAG . . . L 6 94.54 -27.726 46.462 1 89.77 ? N2 NAG 201 D 1 
HETATM 10 O O3 NAG . . . L 6 96.442 -29.901 45.975 1 90.33 ? O3 NAG 201 D 1 
HETATM 11 O O4 NAG . . . L 6 98.745 -29.069 44.477 1 92.15 ? O4 NAG 201 D 1 
HETATM 12 O O5 NAG . . . L 6 96.056 -26.946 43.206 1 86.34 ? O5 NAG 201 D 1 
HETATM 13 O O6 NAG . . . L 6 97.968 -28.426 41.441 1 84.24 ? O6 NAG 201 D 1 
HETATM 14 O O7 NAG . . . L 6 92.63 -28.793 45.975 1 85.9 ? O7 NAG 201 D 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#