data_7S13 # _model_server_result.job_id h0KGGFXZVZs_eIvFV73GuA _model_server_result.datetime_utc '2024-11-29 01:36:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7S13 # _exptl.entry_id 7S13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S13 _cell.length_a 52.03 _cell.length_b 131.25 _cell.length_c 186.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,L,M,N,Q 1 1 C,D,E,J,K,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 143 H CYS 140 1_555 A SG CYS 198 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf3 B SG CYS 21 L CYS 23 1_555 B SG CYS 86 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 135 L CYS 135 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 22 I CYS 22 1_555 C SG CYS 95 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf6 C SG CYS 143 I CYS 140 1_555 C SG CYS 198 I CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 D SG CYS 21 M CYS 23 1_555 D SG CYS 86 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 135 M CYS 135 1_555 D SG CYS 194 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 E SG CYS 25 C CYS 45 1_555 E SG CYS 98 C CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf10 E SG CYS 59 C CYS 79 1_555 E SG CYS 65 C CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 F SG CYS 25 D CYS 45 1_555 F SG CYS 98 D CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf12 F SG CYS 59 D CYS 79 1_555 F SG CYS 65 D CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? covale ? covale1 A C PCA 1 H PCA 1 1_555 A N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 C C PCA 1 I PCA 1 1_555 C N VAL 2 I VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 E ND2 ASN 87 C ASN 107 1_555 K C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 F ND2 ASN 87 D ASN 107 1_555 L C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7S13 _atom_sites.fract_transf_matrix[1][1] 0.01922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 EDO H 1 301 2 EDO EDO . H 4 EDO L 1 301 1 EDO EDO . I 4 EDO L 1 302 3 EDO EDO . J 5 FLC I 1 301 1 FLC FLC . K 6 NAG C 1 201 201 NAG NAG . L 6 NAG D 1 201 201 NAG NAG . M 7 HOH H 1 401 1 HOH HOH . M 7 HOH H 2 402 25 HOH HOH . M 7 HOH H 3 403 5 HOH HOH . M 7 HOH H 4 404 27 HOH HOH . M 7 HOH H 5 405 18 HOH HOH . M 7 HOH H 6 406 36 HOH HOH . M 7 HOH H 7 407 4 HOH HOH . M 7 HOH H 8 408 31 HOH HOH . M 7 HOH H 9 409 37 HOH HOH . M 7 HOH H 10 410 17 HOH HOH . M 7 HOH H 11 411 2 HOH HOH . M 7 HOH H 12 412 12 HOH HOH . M 7 HOH H 13 413 3 HOH HOH . M 7 HOH H 14 414 13 HOH HOH . M 7 HOH H 15 415 32 HOH HOH . N 7 HOH L 1 401 7 HOH HOH . N 7 HOH L 2 402 8 HOH HOH . N 7 HOH L 3 403 28 HOH HOH . N 7 HOH L 4 404 26 HOH HOH . N 7 HOH L 5 405 14 HOH HOH . N 7 HOH L 6 406 29 HOH HOH . N 7 HOH L 7 407 10 HOH HOH . N 7 HOH L 8 408 11 HOH HOH . N 7 HOH L 9 409 35 HOH HOH . N 7 HOH L 10 410 16 HOH HOH . N 7 HOH L 11 411 6 HOH HOH . N 7 HOH L 12 412 30 HOH HOH . N 7 HOH L 13 413 9 HOH HOH . N 7 HOH L 14 414 15 HOH HOH . O 7 HOH I 1 401 33 HOH HOH . O 7 HOH I 2 402 21 HOH HOH . P 7 HOH C 1 301 22 HOH HOH . P 7 HOH C 2 302 23 HOH HOH . P 7 HOH C 3 303 20 HOH HOH . P 7 HOH C 4 304 34 HOH HOH . P 7 HOH C 5 305 19 HOH HOH . Q 7 HOH D 1 301 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 83.41 -9.339 72.29 1 51.13 ? C1 EDO 301 H 1 HETATM 2 O O1 EDO . . . G 4 82.583 -10.512 72.201 1 49.72 ? O1 EDO 301 H 1 HETATM 3 C C2 EDO . . . G 4 84.604 -9.61 73.211 1 61.16 ? C2 EDO 301 H 1 HETATM 4 O O2 EDO . . . G 4 85.501 -10.587 72.624 1 58.08 ? O2 EDO 301 H 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #