data_7S19 # _model_server_result.job_id f146IgIJMGqCuFWPKrbTLQ _model_server_result.datetime_utc '2025-07-08 04:15:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s19 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 7S19 # _exptl.entry_id 7S19 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.026 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-dimethyl-L-valyl-L-leucyl-N-[(3S)-6-{(2S)-2-[(1H-indol-3-yl)methyl]-3-methoxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl}-6-oxo-1-phenylhexan-3-yl]-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7S19 _cell.length_a 95.93 _cell.length_b 95.93 _cell.length_c 68.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S19 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 203 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C16 83K . A 83K 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? # _chem_comp.formula 'C45 H64 N6 O6' _chem_comp.formula_weight 785.026 _chem_comp.id 83K _chem_comp.mon_nstd_flag . _chem_comp.name N,N-dimethyl-L-valyl-L-leucyl-N-[(3S)-6-{(2S)-2-[(1H-indol-3-yl)methyl]-3-methoxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl}-6-oxo-1-phenylhexan-3-yl]-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C29 83K sing 1 n n C29 C28 83K sing 2 n n C29 C30 83K sing 3 n n C28 C27 83K sing 4 n n C16 C15 83K sing 5 n n C16 C17 83K sing 6 n n O3 C26 83K doub 7 n n O2 C14 83K doub 8 n n C15 C14 83K sing 9 n n C26 C27 83K sing 10 n n C26 N2 83K sing 11 n n C17 N2 83K sing 12 n n C17 C18 83K sing 13 n n C14 N 83K sing 14 n n C27 N3 83K sing 15 n n N3 C32 83K sing 16 n n O5 C38 83K doub 17 n n N C4 83K sing 18 n n N C3 83K sing 19 n n C42 C40 83K sing 20 n n C41 C40 83K sing 21 n n C4 C1 83K sing 22 n n C4 C5 83K sing 23 n n C37 C35 83K sing 24 n n C18 C19 83K sing 25 n n C3 O1 83K doub 26 n n C3 C2 83K sing 27 n n C32 C33 83K sing 28 n n C32 O4 83K doub 29 n n C1 C2 83K doub 30 n n C1 O 83K sing 31 n n C40 C39 83K sing 32 n n C5 C6 83K sing 33 n n C38 N4 83K sing 34 n n C38 C39 83K sing 35 n n C33 N4 83K sing 36 n n C33 C34 83K sing 37 n n C19 C20 83K sing 38 n n O C 83K sing 39 n n C39 N5 83K sing 40 n n C35 C34 83K sing 41 n n C35 C36 83K sing 42 n n C44 N5 83K sing 43 n n C21 C20 83K doub 44 n y C21 C22 83K sing 45 n y C20 C25 83K sing 46 n y C6 C7 83K doub 47 n y C6 C9 83K sing 48 n y N5 C43 83K sing 49 n n C7 N1 83K sing 50 n y C22 C23 83K doub 51 n y C25 C24 83K doub 52 n y C9 C10 83K doub 53 n y C9 C8 83K sing 54 n y C10 C11 83K sing 55 n y N1 C8 83K sing 56 n y C23 C24 83K sing 57 n y C8 C13 83K doub 58 n y C11 C12 83K doub 59 n y C13 C12 83K sing 60 n y N1 H1 83K sing 61 n n C2 H2 83K sing 62 n n N3 H3 83K sing 63 n n C4 H4 83K sing 64 n n C5 H5 83K sing 65 n n C5 H6 83K sing 66 n n C39 H7 83K sing 67 n n C44 H9 83K sing 68 n n C44 H10 83K sing 69 n n C44 H11 83K sing 70 n n C43 H12 83K sing 71 n n C43 H13 83K sing 72 n n C43 H14 83K sing 73 n n C40 H15 83K sing 74 n n C42 H16 83K sing 75 n n C42 H17 83K sing 76 n n C42 H18 83K sing 77 n n C41 H19 83K sing 78 n n C41 H20 83K sing 79 n n C41 H21 83K sing 80 n n N4 H22 83K sing 81 n n C33 H23 83K sing 82 n n C34 H24 83K sing 83 n n C34 H25 83K sing 84 n n C35 H26 83K sing 85 n n C37 H27 83K sing 86 n n C37 H28 83K sing 87 n n C37 H29 83K sing 88 n n C36 H30 83K sing 89 n n C36 H31 83K sing 90 n n C36 H32 83K sing 91 n n C27 H33 83K sing 92 n n C28 H34 83K sing 93 n n C28 H35 83K sing 94 n n C29 H36 83K sing 95 n n C31 H37 83K sing 96 n n C31 H38 83K sing 97 n n C31 H39 83K sing 98 n n C30 H40 83K sing 99 n n C30 H41 83K sing 100 n n C30 H42 83K sing 101 n n N2 H43 83K sing 102 n n C17 H44 83K sing 103 n n C18 H45 83K sing 104 n n C18 H46 83K sing 105 n n C19 H47 83K sing 106 n n C19 H48 83K sing 107 n n C25 H49 83K sing 108 n n C24 H50 83K sing 109 n n C23 H51 83K sing 110 n n C22 H52 83K sing 111 n n C21 H53 83K sing 112 n n C16 H54 83K sing 113 n n C16 H55 83K sing 114 n n C15 H56 83K sing 115 n n C15 H57 83K sing 116 n n C H58 83K sing 117 n n C H59 83K sing 118 n n C H60 83K sing 119 n n C10 H61 83K sing 120 n n C11 H62 83K sing 121 n n C12 H63 83K sing 122 n n C13 H64 83K sing 123 n n C7 H65 83K sing 124 n n # _atom_sites.entry_id 7S19 _atom_sites.fract_transf_matrix[1][1] 0.010424 _atom_sites.fract_transf_matrix[1][2] 0.006018 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 83K A 1 300 300 83K AT4 . C 3 HOH A 1 401 17 HOH HOH . C 3 HOH A 2 402 69 HOH HOH . C 3 HOH A 3 403 73 HOH HOH . C 3 HOH A 4 404 15 HOH HOH . C 3 HOH A 5 405 36 HOH HOH . C 3 HOH A 6 406 78 HOH HOH . C 3 HOH A 7 407 14 HOH HOH . C 3 HOH A 8 408 57 HOH HOH . C 3 HOH A 9 409 71 HOH HOH . C 3 HOH A 10 410 11 HOH HOH . C 3 HOH A 11 411 7 HOH HOH . C 3 HOH A 12 412 79 HOH HOH . C 3 HOH A 13 413 9 HOH HOH . C 3 HOH A 14 414 23 HOH HOH . C 3 HOH A 15 415 1 HOH HOH . C 3 HOH A 16 416 75 HOH HOH . C 3 HOH A 17 417 29 HOH HOH . C 3 HOH A 18 418 6 HOH HOH . C 3 HOH A 19 419 16 HOH HOH . C 3 HOH A 20 420 52 HOH HOH . C 3 HOH A 21 421 12 HOH HOH . C 3 HOH A 22 422 76 HOH HOH . C 3 HOH A 23 423 63 HOH HOH . C 3 HOH A 24 424 64 HOH HOH . C 3 HOH A 25 425 10 HOH HOH . C 3 HOH A 26 426 58 HOH HOH . C 3 HOH A 27 427 53 HOH HOH . C 3 HOH A 28 428 35 HOH HOH . C 3 HOH A 29 429 56 HOH HOH . C 3 HOH A 30 430 5 HOH HOH . C 3 HOH A 31 431 70 HOH HOH . C 3 HOH A 32 432 45 HOH HOH . C 3 HOH A 33 433 3 HOH HOH . C 3 HOH A 34 434 42 HOH HOH . C 3 HOH A 35 435 83 HOH HOH . C 3 HOH A 36 436 32 HOH HOH . C 3 HOH A 37 437 59 HOH HOH . C 3 HOH A 38 438 48 HOH HOH . C 3 HOH A 39 439 24 HOH HOH . C 3 HOH A 40 440 81 HOH HOH . C 3 HOH A 41 441 67 HOH HOH . C 3 HOH A 42 442 25 HOH HOH . C 3 HOH A 43 443 65 HOH HOH . C 3 HOH A 44 444 77 HOH HOH . C 3 HOH A 45 445 31 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 41 HOH HOH . C 3 HOH A 48 448 62 HOH HOH . C 3 HOH A 49 449 13 HOH HOH . C 3 HOH A 50 450 2 HOH HOH . C 3 HOH A 51 451 80 HOH HOH . C 3 HOH A 52 452 51 HOH HOH . C 3 HOH A 53 453 37 HOH HOH . C 3 HOH A 54 454 33 HOH HOH . C 3 HOH A 55 455 61 HOH HOH . C 3 HOH A 56 456 55 HOH HOH . C 3 HOH A 57 457 26 HOH HOH . C 3 HOH A 58 458 8 HOH HOH . C 3 HOH A 59 459 66 HOH HOH . C 3 HOH A 60 460 4 HOH HOH . C 3 HOH A 61 461 49 HOH HOH . C 3 HOH A 62 462 60 HOH HOH . C 3 HOH A 63 463 74 HOH HOH . C 3 HOH A 64 464 18 HOH HOH . C 3 HOH A 65 465 47 HOH HOH . C 3 HOH A 66 466 27 HOH HOH . C 3 HOH A 67 467 72 HOH HOH . C 3 HOH A 68 468 82 HOH HOH . C 3 HOH A 69 469 43 HOH HOH . C 3 HOH A 70 470 34 HOH HOH . C 3 HOH A 71 471 44 HOH HOH . C 3 HOH A 72 472 20 HOH HOH . C 3 HOH A 73 473 21 HOH HOH . C 3 HOH A 74 474 84 HOH HOH . C 3 HOH A 75 475 28 HOH HOH . C 3 HOH A 76 476 38 HOH HOH . C 3 HOH A 77 477 54 HOH HOH . C 3 HOH A 78 478 39 HOH HOH . C 3 HOH A 79 479 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5 83K . . . B 2 61.901 7.514 46.009 1 102.02 ? N5 83K 300 A 1 HETATM 2 C C39 83K . . . B 2 61.68 8.768 45.158 1 87.09 ? C39 83K 300 A 1 HETATM 3 C C38 83K . . . B 2 60.373 8.498 44.392 1 75.31 ? C38 83K 300 A 1 HETATM 4 O O5 83K . . . B 2 60.37 8.36 43.178 1 71.09 ? O5 83K 300 A 1 HETATM 5 C C40 83K . . . B 2 62.927 9.364 44.349 1 75.32 ? C40 83K 300 A 1 HETATM 6 C C44 83K . . . B 2 62.363 6.266 45.314 1 91.48 ? C44 83K 300 A 1 HETATM 7 C C43 83K . . . B 2 62.616 7.79 47.295 1 98.83 ? C43 83K 300 A 1 HETATM 8 C C42 83K . . . B 2 63.744 8.392 43.477 1 75.71 ? C42 83K 300 A 1 HETATM 9 C C41 83K . . . B 2 62.633 10.635 43.502 1 64.25 ? C41 83K 300 A 1 HETATM 10 N N4 83K . . . B 2 59.236 8.356 45.12 1 62.35 ? N4 83K 300 A 1 HETATM 11 C C33 83K . . . B 2 57.956 8.106 44.491 1 53.87 ? C33 83K 300 A 1 HETATM 12 C C32 83K . . . B 2 57.329 9.43 44.16 1 47.71 ? C32 83K 300 A 1 HETATM 13 O O4 83K . . . B 2 57.066 10.201 45.03 1 46.35 ? O4 83K 300 A 1 HETATM 14 C C34 83K . . . B 2 56.944 7.366 45.34 1 51.46 ? C34 83K 300 A 1 HETATM 15 C C35 83K . . . B 2 56.907 5.847 45.161 1 61.33 ? C35 83K 300 A 1 HETATM 16 C C37 83K . . . B 2 56.996 5.267 43.732 1 53.87 ? C37 83K 300 A 1 HETATM 17 C C36 83K . . . B 2 55.675 5.296 45.923 1 70.01 ? C36 83K 300 A 1 HETATM 18 N N3 83K . . . B 2 57.024 9.762 42.931 1 40.38 ? N3 83K 300 A 1 HETATM 19 C C27 83K . . . B 2 56.364 11.022 42.65 1 34.48 ? C27 83K 300 A 1 HETATM 20 C C26 83K . . . B 2 54.928 10.701 42.408 1 32.82 ? C26 83K 300 A 1 HETATM 21 O O3 83K . . . B 2 54.62 9.683 41.82 1 36.82 ? O3 83K 300 A 1 HETATM 22 C C28 83K . . . B 2 56.896 11.652 41.383 1 31.92 ? C28 83K 300 A 1 HETATM 23 C C29 83K . . . B 2 58.409 11.722 41.285 1 31.61 ? C29 83K 300 A 1 HETATM 24 C C31 83K . . . B 2 58.798 12.126 39.862 1 35.36 ? C31 83K 300 A 1 HETATM 25 C C30 83K . . . B 2 58.985 12.658 42.323 1 30.94 ? C30 83K 300 A 1 HETATM 26 N N2 83K . . . B 2 54.008 11.544 42.816 1 32.42 ? N2 83K 300 A 1 HETATM 27 C C17 83K . . . B 2 52.56 11.406 42.566 1 32.1 ? C17 83K 300 A 1 HETATM 28 C C18 83K . . . B 2 51.768 11.386 43.861 1 32.29 ? C18 83K 300 A 1 HETATM 29 C C19 83K . . . B 2 51.928 10.036 44.572 1 36.87 ? C19 83K 300 A 1 HETATM 30 C C20 83K . . . B 2 50.949 10.017 45.723 1 40.55 ? C20 83K 300 A 1 HETATM 31 C C25 83K . . . B 2 51.316 10.581 46.938 1 41.16 ? C25 83K 300 A 1 HETATM 32 C C24 83K . . . B 2 50.426 10.571 47.998 1 42.58 ? C24 83K 300 A 1 HETATM 33 C C23 83K . . . B 2 49.166 10.002 47.835 1 47.82 ? C23 83K 300 A 1 HETATM 34 C C22 83K . . . B 2 48.812 9.397 46.624 1 45.8 ? C22 83K 300 A 1 HETATM 35 C C21 83K . . . B 2 49.697 9.417 45.567 1 43.72 ? C21 83K 300 A 1 HETATM 36 C C16 83K . . . B 2 52.118 12.496 41.546 1 31.12 ? C16 83K 300 A 1 HETATM 37 C C15 83K . . . B 2 51.933 13.853 42.241 1 30.27 ? C15 83K 300 A 1 HETATM 38 C C14 83K . . . B 2 50.519 14.221 42.581 1 33.34 ? C14 83K 300 A 1 HETATM 39 O O2 83K . . . B 2 49.682 13.562 42.039 1 36.56 ? O2 83K 300 A 1 HETATM 40 N N1 83K . . . B 2 49.831 14.073 47.647 1 35.81 ? N1 83K 300 A 1 HETATM 41 C C2 83K . . . B 2 50.098 17.145 44.666 1 35.03 ? C2 83K 300 A 1 HETATM 42 C C4 83K . . . B 2 48.645 15.516 43.524 1 37.14 ? C4 83K 300 A 1 HETATM 43 C C5 83K . . . B 2 47.879 14.465 44.385 1 34.13 ? C5 83K 300 A 1 HETATM 44 C C6 83K . . . B 2 48.424 14.372 45.81 1 37.43 ? C6 83K 300 A 1 HETATM 45 C C8 83K . . . B 2 48.701 14.547 48.166 1 36.83 ? C8 83K 300 A 1 HETATM 46 N N 83K . . . B 2 50.094 15.26 43.364 1 35.04 ? N 83K 300 A 1 HETATM 47 C C3 83K . . . B 2 50.862 16.17 44.008 1 37.1 ? C3 83K 300 A 1 HETATM 48 O O1 83K . . . B 2 52.115 16.258 44.065 1 33.03 ? O1 83K 300 A 1 HETATM 49 C C1 83K . . . B 2 48.793 16.761 44.317 1 36.72 ? C1 83K 300 A 1 HETATM 50 O O 83K . . . B 2 47.691 17.409 44.721 1 40.21 ? O 83K 300 A 1 HETATM 51 C C 83K . . . B 2 47.755 18.519 45.621 1 41.24 ? C 83K 300 A 1 HETATM 52 C C9 83K . . . B 2 47.734 14.783 47.045 1 35.17 ? C9 83K 300 A 1 HETATM 53 C C10 83K . . . B 2 46.472 15.284 47.273 1 36.58 ? C10 83K 300 A 1 HETATM 54 C C11 83K . . . B 2 46.096 15.571 48.593 1 37.95 ? C11 83K 300 A 1 HETATM 55 C C12 83K . . . B 2 46.968 15.333 49.652 1 35.46 ? C12 83K 300 A 1 HETATM 56 C C13 83K . . . B 2 48.274 14.827 49.443 1 37.54 ? C13 83K 300 A 1 HETATM 57 C C7 83K . . . B 2 49.692 13.936 46.272 1 36.35 ? C7 83K 300 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 57 #