data_7S1P # _model_server_result.job_id HAl8v6Z-ydHMbK9kXIH9Cw _model_server_result.datetime_utc '2025-07-06 17:41:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7S1P # _exptl.entry_id 7S1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S1P _cell.length_a 96.755 _cell.length_b 137.73 _cell.length_c 178.249 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 290 n n N HN1 SFG sing 291 n n N HN2 SFG sing 292 n n CA C SFG sing 293 n n CA CB SFG sing 294 n n CA HA SFG sing 295 n n C O SFG doub 296 n n C OXT SFG sing 297 n n OXT HXT SFG sing 298 n n CB CG SFG sing 299 n n CB HB1 SFG sing 300 n n CB HB2 SFG sing 301 n n CG CD SFG sing 302 n n CG HG1 SFG sing 303 n n CG HG2 SFG sing 304 n n CD NE SFG sing 305 n n CD C5' SFG sing 306 n n CD HD SFG sing 307 n n NE HNE1 SFG sing 308 n n NE HNE2 SFG sing 309 n n C5' C4' SFG sing 310 n n C5' "H5'1" SFG sing 311 n n C5' "H5'2" SFG sing 312 n n C4' O4' SFG sing 313 n n C4' C3' SFG sing 314 n n C4' H4' SFG sing 315 n n O4' C1' SFG sing 316 n n C3' O3' SFG sing 317 n n C3' C2' SFG sing 318 n n C3' H3' SFG sing 319 n n O3' HO3' SFG sing 320 n n C2' O2' SFG sing 321 n n C2' C1' SFG sing 322 n n C2' H2' SFG sing 323 n n O2' HO2' SFG sing 324 n n C1' N9 SFG sing 325 n n C1' H1' SFG sing 326 n n N9 C8 SFG sing 327 n y N9 C4 SFG sing 328 n y C8 N7 SFG doub 329 n y C8 H8 SFG sing 330 n n N7 C5 SFG sing 331 n y C5 C6 SFG sing 332 n y C5 C4 SFG doub 333 n y C6 N6 SFG sing 334 n n C6 N1 SFG doub 335 n y N6 HN61 SFG sing 336 n n N6 HN62 SFG sing 337 n n N1 C2 SFG sing 338 n y C2 N3 SFG doub 339 n y C2 H2 SFG sing 340 n n N3 C4 SFG sing 341 n y # _atom_sites.entry_id 7S1P _atom_sites.fract_transf_matrix[1][1] 0.010335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SFG A 1 701 701 SFG SFG . D 4 HOH A 1 801 116 HOH HOH . D 4 HOH A 2 802 113 HOH HOH . D 4 HOH A 3 803 82 HOH HOH . D 4 HOH A 4 804 9 HOH HOH . D 4 HOH A 5 805 86 HOH HOH . D 4 HOH A 6 806 121 HOH HOH . D 4 HOH A 7 807 70 HOH HOH . D 4 HOH A 8 808 39 HOH HOH . D 4 HOH A 9 809 47 HOH HOH . D 4 HOH A 10 810 105 HOH HOH . D 4 HOH A 11 811 94 HOH HOH . D 4 HOH A 12 812 26 HOH HOH . D 4 HOH A 13 813 22 HOH HOH . D 4 HOH A 14 814 58 HOH HOH . D 4 HOH A 15 815 4 HOH HOH . D 4 HOH A 16 816 68 HOH HOH . D 4 HOH A 17 817 36 HOH HOH . D 4 HOH A 18 818 42 HOH HOH . D 4 HOH A 19 819 44 HOH HOH . D 4 HOH A 20 820 77 HOH HOH . D 4 HOH A 21 821 52 HOH HOH . D 4 HOH A 22 822 76 HOH HOH . D 4 HOH A 23 823 102 HOH HOH . D 4 HOH A 24 824 78 HOH HOH . D 4 HOH A 25 825 15 HOH HOH . D 4 HOH A 26 826 66 HOH HOH . D 4 HOH A 27 827 63 HOH HOH . D 4 HOH A 28 828 27 HOH HOH . D 4 HOH A 29 829 59 HOH HOH . D 4 HOH A 30 830 10 HOH HOH . D 4 HOH A 31 831 89 HOH HOH . D 4 HOH A 32 832 40 HOH HOH . D 4 HOH A 33 833 93 HOH HOH . D 4 HOH A 34 834 18 HOH HOH . D 4 HOH A 35 835 69 HOH HOH . D 4 HOH A 36 836 117 HOH HOH . D 4 HOH A 37 837 8 HOH HOH . D 4 HOH A 38 838 57 HOH HOH . D 4 HOH A 39 839 13 HOH HOH . D 4 HOH A 40 840 38 HOH HOH . D 4 HOH A 41 841 65 HOH HOH . D 4 HOH A 42 842 95 HOH HOH . D 4 HOH A 43 843 20 HOH HOH . D 4 HOH A 44 844 85 HOH HOH . D 4 HOH A 45 845 46 HOH HOH . D 4 HOH A 46 846 16 HOH HOH . D 4 HOH A 47 847 97 HOH HOH . D 4 HOH A 48 848 107 HOH HOH . D 4 HOH A 49 849 87 HOH HOH . D 4 HOH A 50 850 43 HOH HOH . D 4 HOH A 51 851 19 HOH HOH . D 4 HOH A 52 852 128 HOH HOH . D 4 HOH A 53 853 130 HOH HOH . D 4 HOH A 54 854 61 HOH HOH . D 4 HOH A 55 855 91 HOH HOH . D 4 HOH A 56 856 74 HOH HOH . D 4 HOH A 57 857 54 HOH HOH . D 4 HOH A 58 858 62 HOH HOH . D 4 HOH A 59 859 11 HOH HOH . D 4 HOH A 60 860 30 HOH HOH . D 4 HOH A 61 861 29 HOH HOH . D 4 HOH A 62 862 60 HOH HOH . D 4 HOH A 63 863 111 HOH HOH . D 4 HOH A 64 864 92 HOH HOH . D 4 HOH A 65 865 3 HOH HOH . D 4 HOH A 66 866 75 HOH HOH . D 4 HOH A 67 867 98 HOH HOH . D 4 HOH A 68 868 2 HOH HOH . D 4 HOH A 69 869 64 HOH HOH . D 4 HOH A 70 870 108 HOH HOH . D 4 HOH A 71 871 83 HOH HOH . D 4 HOH A 72 872 81 HOH HOH . D 4 HOH A 73 873 72 HOH HOH . D 4 HOH A 74 874 34 HOH HOH . D 4 HOH A 75 875 101 HOH HOH . D 4 HOH A 76 876 25 HOH HOH . D 4 HOH A 77 877 31 HOH HOH . D 4 HOH A 78 878 7 HOH HOH . D 4 HOH A 79 879 106 HOH HOH . D 4 HOH A 80 880 110 HOH HOH . D 4 HOH A 81 881 5 HOH HOH . D 4 HOH A 82 882 115 HOH HOH . D 4 HOH A 83 883 6 HOH HOH . D 4 HOH A 84 884 48 HOH HOH . D 4 HOH A 85 885 56 HOH HOH . D 4 HOH A 86 886 51 HOH HOH . D 4 HOH A 87 887 1 HOH HOH . D 4 HOH A 88 888 124 HOH HOH . D 4 HOH A 89 889 49 HOH HOH . D 4 HOH A 90 890 73 HOH HOH . D 4 HOH A 91 891 125 HOH HOH . D 4 HOH A 92 892 122 HOH HOH . D 4 HOH A 93 893 84 HOH HOH . D 4 HOH A 94 894 71 HOH HOH . D 4 HOH A 95 895 129 HOH HOH . D 4 HOH A 96 896 109 HOH HOH . D 4 HOH A 97 897 55 HOH HOH . D 4 HOH A 98 898 104 HOH HOH . D 4 HOH A 99 899 99 HOH HOH . E 4 HOH B 1 401 103 HOH HOH . E 4 HOH B 2 402 114 HOH HOH . E 4 HOH B 3 403 79 HOH HOH . E 4 HOH B 4 404 88 HOH HOH . E 4 HOH B 5 405 53 HOH HOH . E 4 HOH B 6 406 67 HOH HOH . E 4 HOH B 7 407 50 HOH HOH . E 4 HOH B 8 408 127 HOH HOH . E 4 HOH B 9 409 17 HOH HOH . E 4 HOH B 10 410 80 HOH HOH . E 4 HOH B 11 411 14 HOH HOH . E 4 HOH B 12 412 37 HOH HOH . E 4 HOH B 13 413 118 HOH HOH . E 4 HOH B 14 414 24 HOH HOH . E 4 HOH B 15 415 12 HOH HOH . E 4 HOH B 16 416 23 HOH HOH . E 4 HOH B 17 417 96 HOH HOH . E 4 HOH B 18 418 21 HOH HOH . E 4 HOH B 19 419 32 HOH HOH . E 4 HOH B 20 420 41 HOH HOH . E 4 HOH B 21 421 45 HOH HOH . E 4 HOH B 22 422 126 HOH HOH . E 4 HOH B 23 423 33 HOH HOH . E 4 HOH B 24 424 90 HOH HOH . E 4 HOH B 25 425 35 HOH HOH . E 4 HOH B 26 426 28 HOH HOH . E 4 HOH B 27 427 112 HOH HOH . E 4 HOH B 28 428 119 HOH HOH . E 4 HOH B 29 429 123 HOH HOH . E 4 HOH B 30 430 100 HOH HOH . E 4 HOH B 31 431 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . C 3 -25.459 -36.131 -6.906 1 39.28 ? N SFG 701 A 1 HETATM 2 C CA SFG . . . C 3 -24.801 -37.196 -6.202 1 40.42 ? CA SFG 701 A 1 HETATM 3 C C SFG . . . C 3 -23.713 -37.787 -7.052 1 50.39 ? C SFG 701 A 1 HETATM 4 O O SFG . . . C 3 -23.517 -37.34 -8.228 1 44.46 ? O SFG 701 A 1 HETATM 5 O OXT SFG . . . C 3 -22.997 -38.726 -6.591 1 53.37 ? OXT SFG 701 A 1 HETATM 6 C CB SFG . . . C 3 -25.824 -38.292 -5.798 1 32.34 ? CB SFG 701 A 1 HETATM 7 C CG SFG . . . C 3 -27.037 -38.231 -6.721 1 38.16 ? CG SFG 701 A 1 HETATM 8 C CD SFG . . . C 3 -27.928 -39.417 -6.458 1 43.11 ? CD SFG 701 A 1 HETATM 9 N NE SFG . . . C 3 -28.057 -40.204 -7.655 1 60.94 ? NE SFG 701 A 1 HETATM 10 C C5' SFG . . . C 3 -29.348 -38.919 -6.014 1 33.63 ? C5' SFG 701 A 1 HETATM 11 C C4' SFG . . . C 3 -29.242 -37.936 -4.79 1 34.15 ? C4' SFG 701 A 1 HETATM 12 O O4' SFG . . . C 3 -30.166 -36.984 -4.847 1 30.27 ? O4' SFG 701 A 1 HETATM 13 C C3' SFG . . . C 3 -29.416 -38.7 -3.485 1 31.07 ? C3' SFG 701 A 1 HETATM 14 O O3' SFG . . . C 3 -28.525 -38.225 -2.563 1 27.57 ? O3' SFG 701 A 1 HETATM 15 C C2' SFG . . . C 3 -30.86 -38.311 -3.052 1 26.19 ? C2' SFG 701 A 1 HETATM 16 O O2' SFG . . . C 3 -30.983 -38.339 -1.546 1 26.7 ? O2' SFG 701 A 1 HETATM 17 C C1' SFG . . . C 3 -30.99 -37.094 -3.468 1 27.46 ? C1' SFG 701 A 1 HETATM 18 N N9 SFG . . . C 3 -32.441 -36.773 -3.728 1 28.02 ? N9 SFG 701 A 1 HETATM 19 C C8 SFG . . . C 3 -33.297 -37.471 -4.418 1 26.48 ? C8 SFG 701 A 1 HETATM 20 N N7 SFG . . . C 3 -34.492 -36.834 -4.398 1 23.75 ? N7 SFG 701 A 1 HETATM 21 C C5 SFG . . . C 3 -34.347 -35.726 -3.682 1 23.76 ? C5 SFG 701 A 1 HETATM 22 C C6 SFG . . . C 3 -35.224 -34.704 -3.33 1 29.65 ? C6 SFG 701 A 1 HETATM 23 N N6 SFG . . . C 3 -36.626 -34.524 -3.651 1 29.78 ? N6 SFG 701 A 1 HETATM 24 N N1 SFG . . . C 3 -34.798 -33.702 -2.593 1 25.18 ? N1 SFG 701 A 1 HETATM 25 C C2 SFG . . . C 3 -33.496 -33.658 -2.169 1 24.23 ? C2 SFG 701 A 1 HETATM 26 N N3 SFG . . . C 3 -32.656 -34.638 -2.505 1 22.36 ? N3 SFG 701 A 1 HETATM 27 C C4 SFG . . . C 3 -33.086 -35.678 -3.267 1 23.9 ? C4 SFG 701 A 1 # _model_server_stats.io_time_ms 125 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #