data_7S1Q # _model_server_result.job_id 7r1LoLxZ-5fr9iyqu92KWQ _model_server_result.datetime_utc '2024-10-19 11:50:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7S1Q # _exptl.entry_id 7S1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S1Q _cell.length_a 103.342 _cell.length_b 137.646 _cell.length_c 178.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 272 n n CS HCS1 MTA sing 273 n n CS HCS2 MTA sing 274 n n CS HCS3 MTA sing 275 n n S5' C5' MTA sing 276 n n C5' C4' MTA sing 277 n n C5' "H5'1" MTA sing 278 n n C5' "H5'2" MTA sing 279 n n C4' O4' MTA sing 280 n n C4' C3' MTA sing 281 n n C4' H4' MTA sing 282 n n O4' C1' MTA sing 283 n n C2' O2' MTA sing 284 n n C2' C3' MTA sing 285 n n C2' C1' MTA sing 286 n n C2' H2' MTA sing 287 n n O2' HO2' MTA sing 288 n n C3' O3' MTA sing 289 n n C3' H3' MTA sing 290 n n O3' H3T MTA sing 291 n n C1' N9 MTA sing 292 n n C1' H1' MTA sing 293 n n N9 C8 MTA sing 294 n y N9 C4 MTA sing 295 n y C8 N7 MTA doub 296 n y C8 H8 MTA sing 297 n n N7 C5 MTA sing 298 n y C5 C6 MTA sing 299 n y C5 C4 MTA doub 300 n y C6 N6 MTA sing 301 n n C6 N1 MTA doub 302 n y N6 H61 MTA sing 303 n n N6 H62 MTA sing 304 n n N1 C2 MTA sing 305 n y C2 N3 MTA doub 306 n y C2 H2 MTA sing 307 n n N3 C4 MTA sing 308 n y # _atom_sites.entry_id 7S1Q _atom_sites.fract_transf_matrix[1][1] 0.009677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 700 MTA MTA . D 4 84W A 1 702 801 84W LIG . E 5 HOH A 1 801 3 HOH HOH . E 5 HOH A 2 802 7 HOH HOH . E 5 HOH A 3 803 15 HOH HOH . E 5 HOH A 4 804 5 HOH HOH . E 5 HOH A 5 805 16 HOH HOH . E 5 HOH A 6 806 13 HOH HOH . E 5 HOH A 7 807 2 HOH HOH . E 5 HOH A 8 808 17 HOH HOH . E 5 HOH A 9 809 1 HOH HOH . E 5 HOH A 10 810 10 HOH HOH . E 5 HOH A 11 811 4 HOH HOH . E 5 HOH A 12 812 8 HOH HOH . E 5 HOH A 13 813 14 HOH HOH . E 5 HOH A 14 814 18 HOH HOH . E 5 HOH A 15 815 9 HOH HOH . E 5 HOH A 16 816 11 HOH HOH . F 5 HOH B 1 401 6 HOH HOH . F 5 HOH B 2 402 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . C 3 -30.119 -39.21 -6.888 1 50.78 ? CS MTA 701 A 1 HETATM 2 S S5' MTA . . . C 3 -31.652 -40.146 -6.617 1 49.63 ? S5' MTA 701 A 1 HETATM 3 C C5' MTA . . . C 3 -33.018 -38.982 -6.351 1 49.07 ? C5' MTA 701 A 1 HETATM 4 C C4' MTA . . . C 3 -32.687 -38.08 -5.146 1 50.35 ? C4' MTA 701 A 1 HETATM 5 O O4' MTA . . . C 3 -33.665 -37.044 -5.035 1 49.81 ? O4' MTA 701 A 1 HETATM 6 C C2' MTA . . . C 3 -34.255 -38.372 -3.355 1 48.92 ? C2' MTA 701 A 1 HETATM 7 O O2' MTA . . . C 3 -34.345 -38.445 -1.868 1 49.67 ? O2' MTA 701 A 1 HETATM 8 C C3' MTA . . . C 3 -32.851 -38.896 -3.838 1 48.87 ? C3' MTA 701 A 1 HETATM 9 O O3' MTA . . . C 3 -31.905 -38.59 -2.962 1 48.13 ? O3' MTA 701 A 1 HETATM 10 C C1' MTA . . . C 3 -34.319 -37.153 -3.765 1 46.79 ? C1' MTA 701 A 1 HETATM 11 N N9 MTA . . . C 3 -35.698 -36.779 -3.906 1 41.89 ? N9 MTA 701 A 1 HETATM 12 C C8 MTA . . . C 3 -36.668 -37.471 -4.578 1 42.11 ? C8 MTA 701 A 1 HETATM 13 N N7 MTA . . . C 3 -37.791 -36.83 -4.481 1 41.61 ? N7 MTA 701 A 1 HETATM 14 C C5 MTA . . . C 3 -37.635 -35.75 -3.786 1 42.61 ? C5 MTA 701 A 1 HETATM 15 C C6 MTA . . . C 3 -38.506 -34.74 -3.401 1 46.04 ? C6 MTA 701 A 1 HETATM 16 N N6 MTA . . . C 3 -39.872 -34.78 -3.782 1 49.25 ? N6 MTA 701 A 1 HETATM 17 N N1 MTA . . . C 3 -38.047 -33.722 -2.665 1 45.74 ? N1 MTA 701 A 1 HETATM 18 C C2 MTA . . . C 3 -36.757 -33.672 -2.297 1 47.73 ? C2 MTA 701 A 1 HETATM 19 N N3 MTA . . . C 3 -35.894 -34.637 -2.656 1 46.35 ? N3 MTA 701 A 1 HETATM 20 C C4 MTA . . . C 3 -36.312 -35.671 -3.394 1 42.71 ? C4 MTA 701 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #