data_7S2I # _model_server_result.job_id kJRQSF-JYUpSoNPk9fQYMw _model_server_result.datetime_utc '2024-11-07 15:31:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":303}' # _entry.id 7S2I # _exptl.entry_id 7S2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S2I _cell.length_a 186.568 _cell.length_b 186.568 _cell.length_c 186.568 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall 'P 4bd 2ab 3' _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,T 1 1 B,L,M,N,O,P,Q,R,S,U 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 19_444 -x-1/4,-z-1/4,-y-1/4 -1 0 0 0 0 -1 0 -1 0 -46.642 -46.642 -46.642 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7S2I _atom_sites.fract_transf_matrix[1][1] 0.00536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HHR A 1 301 1 HHR HHR . D 3 GOL A 1 302 5 GOL GOL . E 3 GOL A 1 303 6 GOL GOL . F 4 SO4 A 1 304 8 SO4 SO4 . G 4 SO4 A 1 305 9 SO4 SO4 . H 4 SO4 A 1 306 10 SO4 SO4 . I 4 SO4 A 1 307 11 SO4 SO4 . J 5 CL A 1 308 12 CL CL . K 5 CL A 1 309 16 CL CL . L 2 HHR B 1 301 2 HHR HHR . M 3 GOL B 1 302 1 GOL GOL . N 3 GOL B 1 303 2 GOL GOL . O 3 GOL B 1 304 3 GOL GOL . P 3 GOL B 1 305 7 GOL GOL . Q 5 CL B 1 306 13 CL CL . R 5 CL B 1 307 14 CL CL . S 5 CL B 1 308 15 CL CL . T 6 HOH A 1 401 293 HOH HOH . T 6 HOH A 2 402 16 HOH HOH . T 6 HOH A 3 403 52 HOH HOH . T 6 HOH A 4 404 87 HOH HOH . T 6 HOH A 5 405 7 HOH HOH . T 6 HOH A 6 406 128 HOH HOH . T 6 HOH A 7 407 4 HOH HOH . T 6 HOH A 8 408 108 HOH HOH . T 6 HOH A 9 409 255 HOH HOH . T 6 HOH A 10 410 258 HOH HOH . T 6 HOH A 11 411 15 HOH HOH . T 6 HOH A 12 412 79 HOH HOH . T 6 HOH A 13 413 21 HOH HOH . T 6 HOH A 14 414 264 HOH HOH . T 6 HOH A 15 415 34 HOH HOH . T 6 HOH A 16 416 42 HOH HOH . T 6 HOH A 17 417 31 HOH HOH . T 6 HOH A 18 418 10 HOH HOH . T 6 HOH A 19 419 24 HOH HOH . T 6 HOH A 20 420 59 HOH HOH . T 6 HOH A 21 421 120 HOH HOH . T 6 HOH A 22 422 100 HOH HOH . T 6 HOH A 23 423 27 HOH HOH . T 6 HOH A 24 424 86 HOH HOH . T 6 HOH A 25 425 119 HOH HOH . T 6 HOH A 26 426 122 HOH HOH . T 6 HOH A 27 427 89 HOH HOH . T 6 HOH A 28 428 138 HOH HOH . T 6 HOH A 29 429 37 HOH HOH . T 6 HOH A 30 430 26 HOH HOH . T 6 HOH A 31 431 33 HOH HOH . T 6 HOH A 32 432 199 HOH HOH . T 6 HOH A 33 433 195 HOH HOH . T 6 HOH A 34 434 266 HOH HOH . T 6 HOH A 35 435 41 HOH HOH . T 6 HOH A 36 436 84 HOH HOH . T 6 HOH A 37 437 8 HOH HOH . T 6 HOH A 38 438 68 HOH HOH . T 6 HOH A 39 439 58 HOH HOH . T 6 HOH A 40 440 9 HOH HOH . T 6 HOH A 41 441 107 HOH HOH . T 6 HOH A 42 442 53 HOH HOH . T 6 HOH A 43 443 260 HOH HOH . T 6 HOH A 44 444 77 HOH HOH . T 6 HOH A 45 445 256 HOH HOH . T 6 HOH A 46 446 252 HOH HOH . T 6 HOH A 47 447 90 HOH HOH . T 6 HOH A 48 448 215 HOH HOH . T 6 HOH A 49 449 30 HOH HOH . T 6 HOH A 50 450 82 HOH HOH . T 6 HOH A 51 451 99 HOH HOH . T 6 HOH A 52 452 126 HOH HOH . T 6 HOH A 53 453 67 HOH HOH . T 6 HOH A 54 454 134 HOH HOH . T 6 HOH A 55 455 63 HOH HOH . T 6 HOH A 56 456 239 HOH HOH . T 6 HOH A 57 457 123 HOH HOH . T 6 HOH A 58 458 73 HOH HOH . T 6 HOH A 59 459 233 HOH HOH . T 6 HOH A 60 460 50 HOH HOH . T 6 HOH A 61 461 253 HOH HOH . T 6 HOH A 62 462 294 HOH HOH . T 6 HOH A 63 463 257 HOH HOH . T 6 HOH A 64 464 200 HOH HOH . T 6 HOH A 65 465 115 HOH HOH . T 6 HOH A 66 466 261 HOH HOH . T 6 HOH A 67 467 193 HOH HOH . T 6 HOH A 68 468 217 HOH HOH . T 6 HOH A 69 469 268 HOH HOH . T 6 HOH A 70 470 104 HOH HOH . T 6 HOH A 71 471 135 HOH HOH . T 6 HOH A 72 472 92 HOH HOH . T 6 HOH A 73 473 137 HOH HOH . T 6 HOH A 74 474 287 HOH HOH . T 6 HOH A 75 475 127 HOH HOH . T 6 HOH A 76 476 280 HOH HOH . T 6 HOH A 77 477 114 HOH HOH . T 6 HOH A 78 478 157 HOH HOH . T 6 HOH A 79 479 218 HOH HOH . T 6 HOH A 80 480 265 HOH HOH . T 6 HOH A 81 481 203 HOH HOH . T 6 HOH A 82 482 210 HOH HOH . T 6 HOH A 83 483 116 HOH HOH . T 6 HOH A 84 484 269 HOH HOH . T 6 HOH A 85 485 76 HOH HOH . T 6 HOH A 86 486 285 HOH HOH . T 6 HOH A 87 487 131 HOH HOH . T 6 HOH A 88 488 146 HOH HOH . T 6 HOH A 89 489 163 HOH HOH . T 6 HOH A 90 490 289 HOH HOH . T 6 HOH A 91 491 288 HOH HOH . T 6 HOH A 92 492 124 HOH HOH . T 6 HOH A 93 493 147 HOH HOH . T 6 HOH A 94 494 238 HOH HOH . T 6 HOH A 95 495 121 HOH HOH . T 6 HOH A 96 496 202 HOH HOH . T 6 HOH A 97 497 102 HOH HOH . T 6 HOH A 98 498 196 HOH HOH . T 6 HOH A 99 499 237 HOH HOH . T 6 HOH A 100 500 129 HOH HOH . T 6 HOH A 101 501 132 HOH HOH . T 6 HOH A 102 502 273 HOH HOH . T 6 HOH A 103 503 290 HOH HOH . T 6 HOH A 104 504 275 HOH HOH . T 6 HOH A 105 505 151 HOH HOH . T 6 HOH A 106 506 111 HOH HOH . T 6 HOH A 107 507 235 HOH HOH . T 6 HOH A 108 508 93 HOH HOH . T 6 HOH A 109 509 201 HOH HOH . T 6 HOH A 110 510 206 HOH HOH . T 6 HOH A 111 511 286 HOH HOH . T 6 HOH A 112 512 72 HOH HOH . T 6 HOH A 113 513 156 HOH HOH . T 6 HOH A 114 514 153 HOH HOH . T 6 HOH A 115 515 101 HOH HOH . T 6 HOH A 116 516 130 HOH HOH . T 6 HOH A 117 517 145 HOH HOH . T 6 HOH A 118 518 198 HOH HOH . T 6 HOH A 119 519 300 HOH HOH . T 6 HOH A 120 520 204 HOH HOH . T 6 HOH A 121 521 103 HOH HOH . T 6 HOH A 122 522 125 HOH HOH . T 6 HOH A 123 523 112 HOH HOH . T 6 HOH A 124 524 283 HOH HOH . T 6 HOH A 125 525 117 HOH HOH . T 6 HOH A 126 526 118 HOH HOH . T 6 HOH A 127 527 136 HOH HOH . T 6 HOH A 128 528 236 HOH HOH . T 6 HOH A 129 529 267 HOH HOH . U 6 HOH B 1 401 35 HOH HOH . U 6 HOH B 2 402 254 HOH HOH . U 6 HOH B 3 403 17 HOH HOH . U 6 HOH B 4 404 29 HOH HOH . U 6 HOH B 5 405 282 HOH HOH . U 6 HOH B 6 406 11 HOH HOH . U 6 HOH B 7 407 83 HOH HOH . U 6 HOH B 8 408 18 HOH HOH . U 6 HOH B 9 409 3 HOH HOH . U 6 HOH B 10 410 150 HOH HOH . U 6 HOH B 11 411 57 HOH HOH . U 6 HOH B 12 412 6 HOH HOH . U 6 HOH B 13 413 75 HOH HOH . U 6 HOH B 14 414 2 HOH HOH . U 6 HOH B 15 415 5 HOH HOH . U 6 HOH B 16 416 38 HOH HOH . U 6 HOH B 17 417 262 HOH HOH . U 6 HOH B 18 418 171 HOH HOH . U 6 HOH B 19 419 20 HOH HOH . U 6 HOH B 20 420 208 HOH HOH . U 6 HOH B 21 421 80 HOH HOH . U 6 HOH B 22 422 44 HOH HOH . U 6 HOH B 23 423 19 HOH HOH . U 6 HOH B 24 424 60 HOH HOH . U 6 HOH B 25 425 40 HOH HOH . U 6 HOH B 26 426 61 HOH HOH . U 6 HOH B 27 427 25 HOH HOH . U 6 HOH B 28 428 48 HOH HOH . U 6 HOH B 29 429 56 HOH HOH . U 6 HOH B 30 430 221 HOH HOH . U 6 HOH B 31 431 170 HOH HOH . U 6 HOH B 32 432 226 HOH HOH . U 6 HOH B 33 433 281 HOH HOH . U 6 HOH B 34 434 242 HOH HOH . U 6 HOH B 35 435 259 HOH HOH . U 6 HOH B 36 436 184 HOH HOH . U 6 HOH B 37 437 228 HOH HOH . U 6 HOH B 38 438 28 HOH HOH . U 6 HOH B 39 439 1 HOH HOH . U 6 HOH B 40 440 71 HOH HOH . U 6 HOH B 41 441 186 HOH HOH . U 6 HOH B 42 442 22 HOH HOH . U 6 HOH B 43 443 55 HOH HOH . U 6 HOH B 44 444 149 HOH HOH . U 6 HOH B 45 445 66 HOH HOH . U 6 HOH B 46 446 39 HOH HOH . U 6 HOH B 47 447 51 HOH HOH . U 6 HOH B 48 448 144 HOH HOH . U 6 HOH B 49 449 263 HOH HOH . U 6 HOH B 50 450 32 HOH HOH . U 6 HOH B 51 451 47 HOH HOH . U 6 HOH B 52 452 179 HOH HOH . U 6 HOH B 53 453 36 HOH HOH . U 6 HOH B 54 454 159 HOH HOH . U 6 HOH B 55 455 180 HOH HOH . U 6 HOH B 56 456 69 HOH HOH . U 6 HOH B 57 457 43 HOH HOH . U 6 HOH B 58 458 166 HOH HOH . U 6 HOH B 59 459 54 HOH HOH . U 6 HOH B 60 460 14 HOH HOH . U 6 HOH B 61 461 85 HOH HOH . U 6 HOH B 62 462 165 HOH HOH . U 6 HOH B 63 463 74 HOH HOH . U 6 HOH B 64 464 175 HOH HOH . U 6 HOH B 65 465 81 HOH HOH . U 6 HOH B 66 466 225 HOH HOH . U 6 HOH B 67 467 244 HOH HOH . U 6 HOH B 68 468 23 HOH HOH . U 6 HOH B 69 469 45 HOH HOH . U 6 HOH B 70 470 46 HOH HOH . U 6 HOH B 71 471 222 HOH HOH . U 6 HOH B 72 472 164 HOH HOH . U 6 HOH B 73 473 161 HOH HOH . U 6 HOH B 74 474 62 HOH HOH . U 6 HOH B 75 475 284 HOH HOH . U 6 HOH B 76 476 65 HOH HOH . U 6 HOH B 77 477 160 HOH HOH . U 6 HOH B 78 478 88 HOH HOH . U 6 HOH B 79 479 13 HOH HOH . U 6 HOH B 80 480 64 HOH HOH . U 6 HOH B 81 481 169 HOH HOH . U 6 HOH B 82 482 181 HOH HOH . U 6 HOH B 83 483 207 HOH HOH . U 6 HOH B 84 484 110 HOH HOH . U 6 HOH B 85 485 183 HOH HOH . U 6 HOH B 86 486 227 HOH HOH . U 6 HOH B 87 487 70 HOH HOH . U 6 HOH B 88 488 191 HOH HOH . U 6 HOH B 89 489 224 HOH HOH . U 6 HOH B 90 490 232 HOH HOH . U 6 HOH B 91 491 194 HOH HOH . U 6 HOH B 92 492 91 HOH HOH . U 6 HOH B 93 493 197 HOH HOH . U 6 HOH B 94 494 109 HOH HOH . U 6 HOH B 95 495 209 HOH HOH . U 6 HOH B 96 496 96 HOH HOH . U 6 HOH B 97 497 216 HOH HOH . U 6 HOH B 98 498 177 HOH HOH . U 6 HOH B 99 499 299 HOH HOH . U 6 HOH B 100 500 241 HOH HOH . U 6 HOH B 101 501 291 HOH HOH . U 6 HOH B 102 502 168 HOH HOH . U 6 HOH B 103 503 246 HOH HOH . U 6 HOH B 104 504 49 HOH HOH . U 6 HOH B 105 505 189 HOH HOH . U 6 HOH B 106 506 297 HOH HOH . U 6 HOH B 107 507 298 HOH HOH . U 6 HOH B 108 508 211 HOH HOH . U 6 HOH B 109 509 192 HOH HOH . U 6 HOH B 110 510 243 HOH HOH . U 6 HOH B 111 511 158 HOH HOH . U 6 HOH B 112 512 174 HOH HOH . U 6 HOH B 113 513 219 HOH HOH . U 6 HOH B 114 514 231 HOH HOH . U 6 HOH B 115 515 274 HOH HOH . U 6 HOH B 116 516 178 HOH HOH . U 6 HOH B 117 517 190 HOH HOH . U 6 HOH B 118 518 154 HOH HOH . U 6 HOH B 119 519 249 HOH HOH . U 6 HOH B 120 520 182 HOH HOH . U 6 HOH B 121 521 185 HOH HOH . U 6 HOH B 122 522 248 HOH HOH . U 6 HOH B 123 523 223 HOH HOH . U 6 HOH B 124 524 12 HOH HOH . U 6 HOH B 125 525 245 HOH HOH . U 6 HOH B 126 526 296 HOH HOH . U 6 HOH B 127 527 106 HOH HOH . U 6 HOH B 128 528 113 HOH HOH . U 6 HOH B 129 529 251 HOH HOH . U 6 HOH B 130 530 301 HOH HOH . U 6 HOH B 131 531 302 HOH HOH . U 6 HOH B 132 532 229 HOH HOH . U 6 HOH B 133 533 152 HOH HOH . U 6 HOH B 134 534 188 HOH HOH . U 6 HOH B 135 535 303 HOH HOH . U 6 HOH B 136 536 272 HOH HOH . U 6 HOH B 137 537 97 HOH HOH . U 6 HOH B 138 538 176 HOH HOH . U 6 HOH B 139 539 250 HOH HOH . U 6 HOH B 140 540 172 HOH HOH . U 6 HOH B 141 541 247 HOH HOH . U 6 HOH B 142 542 94 HOH HOH . U 6 HOH B 143 543 155 HOH HOH . U 6 HOH B 144 544 148 HOH HOH . U 6 HOH B 145 545 173 HOH HOH . U 6 HOH B 146 546 187 HOH HOH . U 6 HOH B 147 547 162 HOH HOH . U 6 HOH B 148 548 78 HOH HOH . U 6 HOH B 149 549 240 HOH HOH . U 6 HOH B 150 550 295 HOH HOH . U 6 HOH B 151 551 234 HOH HOH . U 6 HOH B 152 552 271 HOH HOH . U 6 HOH B 153 553 105 HOH HOH . U 6 HOH B 154 554 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 3 -21.369 -89.796 7.95 1 96.36 ? C1 GOL 303 B 1 HETATM 2 O O1 GOL . . . N 3 -21.117 -89.803 9.337 1 94.25 ? O1 GOL 303 B 1 HETATM 3 C C2 GOL . . . N 3 -22.787 -90.426 7.7 1 105.53 ? C2 GOL 303 B 1 HETATM 4 O O2 GOL . . . N 3 -23.691 -90.127 8.713 1 119.53 ? O2 GOL 303 B 1 HETATM 5 C C3 GOL . . . N 3 -23.256 -89.923 6.276 1 99.96 ? C3 GOL 303 B 1 HETATM 6 O O3 GOL . . . N 3 -23.998 -88.729 6.421 1 88.74 ? O3 GOL 303 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #