data_7S3B # _model_server_result.job_id Y2Nz3TYV7A9XCNVSkw_eMA _model_server_result.datetime_utc '2024-11-15 18:58:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7S3B # _exptl.entry_id 7S3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S3B _cell.length_a 43.668 _cell.length_b 57.839 _cell.length_c 76.938 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 5 B U 6 1_555 B P BRU 6 B BRU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale2 B O3' BRU 6 B BRU 7 1_555 B P C 7 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 381 n n C1 C2 PEG sing 382 n n C1 H11 PEG sing 383 n n C1 H12 PEG sing 384 n n O1 HO1 PEG sing 385 n n C2 O2 PEG sing 386 n n C2 H21 PEG sing 387 n n C2 H22 PEG sing 388 n n O2 C3 PEG sing 389 n n C3 C4 PEG sing 390 n n C3 H31 PEG sing 391 n n C3 H32 PEG sing 392 n n C4 O4 PEG sing 393 n n C4 H41 PEG sing 394 n n C4 H42 PEG sing 395 n n O4 HO4 PEG sing 396 n n # _atom_sites.entry_id 7S3B _atom_sites.fract_transf_matrix[1][1] 0.0229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PEG A 1 401 1 PEG PEG . D 3 PEG A 1 402 3 PEG PEG . E 4 HOH A 1 501 52 HOH HOH . E 4 HOH A 2 502 209 HOH HOH . E 4 HOH A 3 503 122 HOH HOH . E 4 HOH A 4 504 137 HOH HOH . E 4 HOH A 5 505 55 HOH HOH . E 4 HOH A 6 506 131 HOH HOH . E 4 HOH A 7 507 75 HOH HOH . E 4 HOH A 8 508 240 HOH HOH . E 4 HOH A 9 509 50 HOH HOH . E 4 HOH A 10 510 139 HOH HOH . E 4 HOH A 11 511 149 HOH HOH . E 4 HOH A 12 512 198 HOH HOH . E 4 HOH A 13 513 47 HOH HOH . E 4 HOH A 14 514 167 HOH HOH . E 4 HOH A 15 515 96 HOH HOH . E 4 HOH A 16 516 40 HOH HOH . E 4 HOH A 17 517 118 HOH HOH . E 4 HOH A 18 518 102 HOH HOH . E 4 HOH A 19 519 64 HOH HOH . E 4 HOH A 20 520 43 HOH HOH . E 4 HOH A 21 521 13 HOH HOH . E 4 HOH A 22 522 179 HOH HOH . E 4 HOH A 23 523 31 HOH HOH . E 4 HOH A 24 524 126 HOH HOH . E 4 HOH A 25 525 17 HOH HOH . E 4 HOH A 26 526 221 HOH HOH . E 4 HOH A 27 527 23 HOH HOH . E 4 HOH A 28 528 173 HOH HOH . E 4 HOH A 29 529 146 HOH HOH . E 4 HOH A 30 530 80 HOH HOH . E 4 HOH A 31 531 2 HOH HOH . E 4 HOH A 32 532 99 HOH HOH . E 4 HOH A 33 533 46 HOH HOH . E 4 HOH A 34 534 76 HOH HOH . E 4 HOH A 35 535 84 HOH HOH . E 4 HOH A 36 536 7 HOH HOH . E 4 HOH A 37 537 14 HOH HOH . E 4 HOH A 38 538 162 HOH HOH . E 4 HOH A 39 539 22 HOH HOH . E 4 HOH A 40 540 34 HOH HOH . E 4 HOH A 41 541 91 HOH HOH . E 4 HOH A 42 542 20 HOH HOH . E 4 HOH A 43 543 207 HOH HOH . E 4 HOH A 44 544 97 HOH HOH . E 4 HOH A 45 545 113 HOH HOH . E 4 HOH A 46 546 174 HOH HOH . E 4 HOH A 47 547 62 HOH HOH . E 4 HOH A 48 548 212 HOH HOH . E 4 HOH A 49 549 237 HOH HOH . E 4 HOH A 50 550 27 HOH HOH . E 4 HOH A 51 551 153 HOH HOH . E 4 HOH A 52 552 38 HOH HOH . E 4 HOH A 53 553 86 HOH HOH . E 4 HOH A 54 554 236 HOH HOH . E 4 HOH A 55 555 25 HOH HOH . E 4 HOH A 56 556 160 HOH HOH . E 4 HOH A 57 557 101 HOH HOH . E 4 HOH A 58 558 51 HOH HOH . E 4 HOH A 59 559 78 HOH HOH . E 4 HOH A 60 560 164 HOH HOH . E 4 HOH A 61 561 77 HOH HOH . E 4 HOH A 62 562 63 HOH HOH . E 4 HOH A 63 563 6 HOH HOH . E 4 HOH A 64 564 9 HOH HOH . E 4 HOH A 65 565 158 HOH HOH . E 4 HOH A 66 566 222 HOH HOH . E 4 HOH A 67 567 56 HOH HOH . E 4 HOH A 68 568 41 HOH HOH . E 4 HOH A 69 569 21 HOH HOH . E 4 HOH A 70 570 100 HOH HOH . E 4 HOH A 71 571 106 HOH HOH . E 4 HOH A 72 572 133 HOH HOH . E 4 HOH A 73 573 18 HOH HOH . E 4 HOH A 74 574 61 HOH HOH . E 4 HOH A 75 575 82 HOH HOH . E 4 HOH A 76 576 15 HOH HOH . E 4 HOH A 77 577 248 HOH HOH . E 4 HOH A 78 578 193 HOH HOH . E 4 HOH A 79 579 161 HOH HOH . E 4 HOH A 80 580 10 HOH HOH . E 4 HOH A 81 581 8 HOH HOH . E 4 HOH A 82 582 199 HOH HOH . E 4 HOH A 83 583 180 HOH HOH . E 4 HOH A 84 584 36 HOH HOH . E 4 HOH A 85 585 48 HOH HOH . E 4 HOH A 86 586 3 HOH HOH . E 4 HOH A 87 587 57 HOH HOH . E 4 HOH A 88 588 30 HOH HOH . E 4 HOH A 89 589 223 HOH HOH . E 4 HOH A 90 590 148 HOH HOH . E 4 HOH A 91 591 24 HOH HOH . E 4 HOH A 92 592 220 HOH HOH . E 4 HOH A 93 593 53 HOH HOH . E 4 HOH A 94 594 110 HOH HOH . E 4 HOH A 95 595 59 HOH HOH . E 4 HOH A 96 596 70 HOH HOH . E 4 HOH A 97 597 171 HOH HOH . E 4 HOH A 98 598 244 HOH HOH . E 4 HOH A 99 599 4 HOH HOH . E 4 HOH A 100 600 29 HOH HOH . E 4 HOH A 101 601 239 HOH HOH . E 4 HOH A 102 602 147 HOH HOH . E 4 HOH A 103 603 156 HOH HOH . E 4 HOH A 104 604 87 HOH HOH . E 4 HOH A 105 605 33 HOH HOH . E 4 HOH A 106 606 16 HOH HOH . E 4 HOH A 107 607 127 HOH HOH . E 4 HOH A 108 608 154 HOH HOH . E 4 HOH A 109 609 95 HOH HOH . E 4 HOH A 110 610 203 HOH HOH . E 4 HOH A 111 611 225 HOH HOH . E 4 HOH A 112 612 42 HOH HOH . E 4 HOH A 113 613 116 HOH HOH . E 4 HOH A 114 614 35 HOH HOH . E 4 HOH A 115 615 81 HOH HOH . E 4 HOH A 116 616 119 HOH HOH . E 4 HOH A 117 617 71 HOH HOH . E 4 HOH A 118 618 72 HOH HOH . E 4 HOH A 119 619 150 HOH HOH . E 4 HOH A 120 620 189 HOH HOH . E 4 HOH A 121 621 166 HOH HOH . E 4 HOH A 122 622 227 HOH HOH . E 4 HOH A 123 623 115 HOH HOH . E 4 HOH A 124 624 39 HOH HOH . E 4 HOH A 125 625 28 HOH HOH . E 4 HOH A 126 626 235 HOH HOH . E 4 HOH A 127 627 242 HOH HOH . E 4 HOH A 128 628 123 HOH HOH . E 4 HOH A 129 629 232 HOH HOH . E 4 HOH A 130 630 89 HOH HOH . E 4 HOH A 131 631 169 HOH HOH . E 4 HOH A 132 632 163 HOH HOH . E 4 HOH A 133 633 181 HOH HOH . E 4 HOH A 134 634 130 HOH HOH . E 4 HOH A 135 635 12 HOH HOH . E 4 HOH A 136 636 83 HOH HOH . E 4 HOH A 137 637 219 HOH HOH . E 4 HOH A 138 638 107 HOH HOH . E 4 HOH A 139 639 58 HOH HOH . E 4 HOH A 140 640 67 HOH HOH . E 4 HOH A 141 641 206 HOH HOH . E 4 HOH A 142 642 205 HOH HOH . E 4 HOH A 143 643 136 HOH HOH . E 4 HOH A 144 644 187 HOH HOH . E 4 HOH A 145 645 247 HOH HOH . E 4 HOH A 146 646 104 HOH HOH . E 4 HOH A 147 647 228 HOH HOH . E 4 HOH A 148 648 135 HOH HOH . E 4 HOH A 149 649 141 HOH HOH . E 4 HOH A 150 650 229 HOH HOH . E 4 HOH A 151 651 186 HOH HOH . E 4 HOH A 152 652 103 HOH HOH . E 4 HOH A 153 653 249 HOH HOH . E 4 HOH A 154 654 197 HOH HOH . E 4 HOH A 155 655 233 HOH HOH . E 4 HOH A 156 656 49 HOH HOH . E 4 HOH A 157 657 172 HOH HOH . E 4 HOH A 158 658 93 HOH HOH . E 4 HOH A 159 659 231 HOH HOH . E 4 HOH A 160 660 111 HOH HOH . E 4 HOH A 161 661 157 HOH HOH . E 4 HOH A 162 662 26 HOH HOH . E 4 HOH A 163 663 117 HOH HOH . E 4 HOH A 164 664 90 HOH HOH . E 4 HOH A 165 665 195 HOH HOH . E 4 HOH A 166 666 73 HOH HOH . E 4 HOH A 167 667 105 HOH HOH . E 4 HOH A 168 668 218 HOH HOH . E 4 HOH A 169 669 112 HOH HOH . E 4 HOH A 170 670 177 HOH HOH . E 4 HOH A 171 671 215 HOH HOH . E 4 HOH A 172 672 234 HOH HOH . E 4 HOH A 173 673 246 HOH HOH . E 4 HOH A 174 674 69 HOH HOH . E 4 HOH A 175 675 152 HOH HOH . E 4 HOH A 176 676 201 HOH HOH . E 4 HOH A 177 677 241 HOH HOH . E 4 HOH A 178 678 145 HOH HOH . E 4 HOH A 179 679 250 HOH HOH . F 4 HOH B 1 101 190 HOH HOH . F 4 HOH B 2 102 120 HOH HOH . F 4 HOH B 3 103 138 HOH HOH . F 4 HOH B 4 104 98 HOH HOH . F 4 HOH B 5 105 230 HOH HOH . F 4 HOH B 6 106 92 HOH HOH . F 4 HOH B 7 107 238 HOH HOH . F 4 HOH B 8 108 44 HOH HOH . F 4 HOH B 9 109 245 HOH HOH . F 4 HOH B 10 110 1 HOH HOH . F 4 HOH B 11 111 11 HOH HOH . F 4 HOH B 12 112 182 HOH HOH . F 4 HOH B 13 113 74 HOH HOH . F 4 HOH B 14 114 88 HOH HOH . F 4 HOH B 15 115 226 HOH HOH . F 4 HOH B 16 116 85 HOH HOH . F 4 HOH B 17 117 224 HOH HOH . F 4 HOH B 18 118 54 HOH HOH . F 4 HOH B 19 119 216 HOH HOH . F 4 HOH B 20 120 60 HOH HOH . F 4 HOH B 21 121 178 HOH HOH . F 4 HOH B 22 122 79 HOH HOH . F 4 HOH B 23 123 217 HOH HOH . F 4 HOH B 24 124 124 HOH HOH . F 4 HOH B 25 125 144 HOH HOH . F 4 HOH B 26 126 243 HOH HOH . F 4 HOH B 27 127 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 3 -4.203 14.425 18.836 1 33.45 ? C1 PEG 402 A 1 HETATM 2 O O1 PEG . . . D 3 -5.615 14.652 18.783 1 44.41 ? O1 PEG 402 A 1 HETATM 3 C C2 PEG . . . D 3 -3.618 14.476 17.427 1 34.7 ? C2 PEG 402 A 1 HETATM 4 O O2 PEG . . . D 3 -2.541 15.41 17.35 1 42.32 ? O2 PEG 402 A 1 HETATM 5 C C3 PEG . . . D 3 -1.763 15.192 16.173 1 41.34 ? C3 PEG 402 A 1 HETATM 6 C C4 PEG . . . D 3 -1.124 16.49 15.689 1 34.23 ? C4 PEG 402 A 1 HETATM 7 O O4 PEG . . . D 3 -0.358 16.231 14.508 1 37.4 ? O4 PEG 402 A 1 HETATM 8 H H11 PEG . . . D 3 -4.002 13.45 19.284 1 40.14 ? H11 PEG 402 A 1 HETATM 9 H H12 PEG . . . D 3 -3.73 15.186 19.46 1 40.14 ? H12 PEG 402 A 1 HETATM 10 H HO1 PEG . . . D 3 -5.99 14.557 19.67 1 53.3 ? HO1 PEG 402 A 1 HETATM 11 H H21 PEG . . . D 3 -4.399 14.763 16.72 1 41.64 ? H21 PEG 402 A 1 HETATM 12 H H22 PEG . . . D 3 -3.259 13.484 17.147 1 41.64 ? H22 PEG 402 A 1 HETATM 13 H H31 PEG . . . D 3 -2.402 14.785 15.386 1 49.61 ? H31 PEG 402 A 1 HETATM 14 H H32 PEG . . . D 3 -0.983 14.458 16.385 1 49.61 ? H32 PEG 402 A 1 HETATM 15 H H41 PEG . . . D 3 -0.477 16.898 16.469 1 41.08 ? H41 PEG 402 A 1 HETATM 16 H H42 PEG . . . D 3 -1.899 17.228 15.475 1 41.08 ? H42 PEG 402 A 1 HETATM 17 H HO4 PEG . . . D 3 0.023 17.058 14.183 1 44.87 ? HO4 PEG 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 17 #