data_7S3L # _model_server_result.job_id omrOxOtY3ITZ6K-3UWnRgg _model_server_result.datetime_utc '2025-08-22 00:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7S3L # _exptl.entry_id 7S3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S3L _cell.length_a 98.118 _cell.length_b 98.118 _cell.length_c 69.127 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 4 A ASP 4 1_555 A N MSE 5 A MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 5 A MSE 5 1_555 A N ASN 6 A ASN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C ARG 65 A ARG 65 1_555 A N MSE 66 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C MSE 66 A MSE 66 1_555 A N GLU 67 A GLU 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C TRP 77 A TRP 77 1_555 A N MSE 78 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 A C MSE 78 A MSE 78 1_555 A N THR 79 A THR 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C ASP 87 A ASP 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 88 A MSE 88 1_555 A N SER 89 A SER 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C ASP 108 A ASP 108 1_555 A N MSE 109 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C MSE 109 A MSE 109 1_555 A N LEU 110 A LEU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C ALA 188 A ALA 188 1_555 A N MSE 189 A MSE 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale12 A C MSE 189 A MSE 189 1_555 A N ILE 190 A ILE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C ALA 194 A ALA 194 1_555 A N MSE 195 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C MSE 195 A MSE 195 1_555 A N ASP 196 A ASP 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 A C SER 215 A SER 215 1_555 A N MSE 216 A MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 A C MSE 216 A MSE 216 1_555 A N TYR 217 A TYR 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 A C ARG 228 A ARG 228 1_555 A N MSE 229 A MSE 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 A C MSE 229 A MSE 229 1_555 A N ALA 230 A ALA 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale19 A C ALA 256 A ALA 256 1_555 A N MSE 257 A MSE 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 A C MSE 257 A MSE 257 1_555 A N GLU 258 A GLU 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale21 A C LEU 263 A LEU 263 1_555 A N MSE 264 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 A C MSE 264 A MSE 264 1_555 A N LYS 265 A LYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7S3L _atom_sites.fract_transf_matrix[1][1] 0.010192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 301 301 ANP ANP . C 3 HOH A 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 50.812 7.051 13.213 1 120.43 ? PG ANP 301 A 1 HETATM 2 O O1G ANP . . . B 2 51.186 6.046 12.162 1 116.48 ? O1G ANP 301 A 1 HETATM 3 O O2G ANP . . . B 2 50.625 8.47 12.528 1 108.36 ? O2G ANP 301 A 1 HETATM 4 O O3G ANP . . . B 2 49.453 6.61 13.91 1 114.13 ? O3G ANP 301 A 1 HETATM 5 P PB ANP . . . B 2 51.781 8.267 15.576 1 116.13 ? PB ANP 301 A 1 HETATM 6 O O1B ANP . . . B 2 50.322 8.23 16.018 1 116.82 ? O1B ANP 301 A 1 HETATM 7 O O2B ANP . . . B 2 52.719 7.994 16.79 1 96.7 ? O2B ANP 301 A 1 HETATM 8 N N3B ANP . . . B 2 52.048 7.099 14.386 1 111.2 ? N3B ANP 301 A 1 HETATM 9 P PA ANP . . . B 2 53.359 10.254 14.282 1 97.79 ? PA ANP 301 A 1 HETATM 10 O O1A ANP . . . B 2 54.563 9.425 14.554 1 90.19 ? O1A ANP 301 A 1 HETATM 11 O O2A ANP . . . B 2 52.994 10.471 12.807 1 93.15 ? O2A ANP 301 A 1 HETATM 12 O O3A ANP . . . B 2 52.033 9.715 15.013 1 108.31 ? O3A ANP 301 A 1 HETATM 13 O O5' ANP . . . B 2 53.567 11.611 15.052 1 91.52 ? O5' ANP 301 A 1 HETATM 14 C C5' ANP . . . B 2 52.47 12.536 15.097 1 90.43 ? C5' ANP 301 A 1 HETATM 15 C C4' ANP . . . B 2 52.318 13.109 16.483 1 90.81 ? C4' ANP 301 A 1 HETATM 16 O O4' ANP . . . B 2 53.325 14.128 16.69 1 87.53 ? O4' ANP 301 A 1 HETATM 17 C C3' ANP . . . B 2 50.99 13.825 16.707 1 93 ? C3' ANP 301 A 1 HETATM 18 O O3' ANP . . . B 2 50.701 13.866 18.102 1 94.39 ? O3' ANP 301 A 1 HETATM 19 C C2' ANP . . . B 2 51.295 15.21 16.138 1 84.6 ? C2' ANP 301 A 1 HETATM 20 O O2' ANP . . . B 2 50.434 16.226 16.641 1 88.98 ? O2' ANP 301 A 1 HETATM 21 C C1' ANP . . . B 2 52.715 15.409 16.671 1 82.92 ? C1' ANP 301 A 1 HETATM 22 N N9 ANP . . . B 2 53.535 16.305 15.89 1 78.73 ? N9 ANP 301 A 1 HETATM 23 C C8 ANP . . . B 2 54.264 16.029 14.756 1 75.87 ? C8 ANP 301 A 1 HETATM 24 N N7 ANP . . . B 2 54.938 17.041 14.268 1 74.86 ? N7 ANP 301 A 1 HETATM 25 C C5 ANP . . . B 2 54.627 18.076 15.157 1 71.93 ? C5 ANP 301 A 1 HETATM 26 C C6 ANP . . . B 2 55.022 19.431 15.193 1 68.95 ? C6 ANP 301 A 1 HETATM 27 N N6 ANP . . . B 2 55.84 19.996 14.304 1 63.72 ? N6 ANP 301 A 1 HETATM 28 N N1 ANP . . . B 2 54.528 20.193 16.202 1 69.59 ? N1 ANP 301 A 1 HETATM 29 C C2 ANP . . . B 2 53.715 19.627 17.099 1 67.06 ? C2 ANP 301 A 1 HETATM 30 N N3 ANP . . . B 2 53.276 18.367 17.156 1 71.09 ? N3 ANP 301 A 1 HETATM 31 C C4 ANP . . . B 2 53.781 17.638 16.139 1 72.32 ? C4 ANP 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #