data_7S3P
#
_model_server_result.job_id            Xkrp84atjg36mdkyOe1aVA 
_model_server_result.datetime_utc      '2024-11-09 01:22:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7s3p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":501}' 
#
_entry.id    7S3P 
#
_exptl.entry_id    7S3P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              546.649 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Physachenolide C' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7S3P 
_cell.length_a            101.448 
_cell.length_b            158.535 
_cell.length_c            293.233 
_cell.Z_PDB               88 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7S3P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,L,M,CA 1 1 
B,N,O,DA 2 1 
C,P,EA 3 1 
D,Q,R,FA 4 1 
E,S,GA 5 1 
F,T,HA 6 1 
G,U,V,IA 7 1 
H,W,X,JA 8 1 
I,Y,KA 9 1 
J,Z,AA,LA 10 1 
K,BA,MA 11 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 T N N 
? 2 V N N 
? 2 W N N 
? 2 Y N N 
? 2 Z N N 
? 2 BA N N 
#
_chem_comp.formula           'C30 H42 O9' 
_chem_comp.formula_weight    546.649 
_chem_comp.id                8L6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Physachenolide C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C24 8L6 doub 1 n n 
C25 C24 8L6 sing 2 n n 
C24 O5 8L6 sing 3 n n 
O5 C23 8L6 sing 4 n n 
C18 C17 8L6 sing 5 n n 
C7 C6 8L6 sing 6 n n 
C23 C22 8L6 sing 7 n n 
O7 C16 8L6 sing 8 n n 
O7 C15 8L6 sing 9 n n 
C17 C16 8L6 sing 10 n n 
C17 C29 8L6 sing 11 n n 
C17 C19 8L6 sing 12 n n 
C16 C26 8L6 sing 13 n n 
C16 C15 8L6 sing 14 n n 
C28 C29 8L6 sing 15 n n 
C28 C27 8L6 sing 16 n n 
C29 O8 8L6 doub 17 n n 
C26 C27 8L6 sing 18 n n 
O3 C9 8L6 sing 19 n n 
C6 C8 8L6 sing 20 n n 
C6 C4 8L6 doub 21 n n 
C20 C21 8L6 sing 22 n n 
C20 C19 8L6 sing 23 n n 
C22 C21 8L6 sing 24 n n 
C22 C9 8L6 sing 25 n n 
C22 C12 8L6 sing 26 n n 
C8 C2 8L6 sing 27 n n 
C19 C13 8L6 sing 28 n n 
C13 C14 8L6 sing 29 n n 
C13 C12 8L6 sing 30 n n 
C15 C14 8L6 sing 31 n n 
C5 C4 8L6 sing 32 n n 
C9 C10 8L6 sing 33 n n 
C9 C1 8L6 sing 34 n n 
C4 C3 8L6 sing 35 n n 
C12 C11 8L6 sing 36 n n 
C12 O4 8L6 sing 37 n n 
C10 C11 8L6 sing 38 n n 
C2 C1 8L6 sing 39 n n 
C2 O 8L6 sing 40 n n 
C1 O2 8L6 sing 41 n n 
C1 C 8L6 sing 42 n n 
C3 O 8L6 sing 43 n n 
C3 O1 8L6 doub 44 n n 
C H1 8L6 sing 45 n n 
C H3 8L6 sing 46 n n 
C H2 8L6 sing 47 n n 
C10 H5 8L6 sing 48 n n 
C10 H4 8L6 sing 49 n n 
C11 H7 8L6 sing 50 n n 
C11 H6 8L6 sing 51 n n 
C13 H8 8L6 sing 52 n n 
C14 H9 8L6 sing 53 n n 
C14 H10 8L6 sing 54 n n 
C15 H11 8L6 sing 55 n n 
C18 H12 8L6 sing 56 n n 
C18 H13 8L6 sing 57 n n 
C18 H14 8L6 sing 58 n n 
C19 H15 8L6 sing 59 n n 
C2 H16 8L6 sing 60 n n 
C20 H17 8L6 sing 61 n n 
C20 H18 8L6 sing 62 n n 
C21 H19 8L6 sing 63 n n 
C21 H20 8L6 sing 64 n n 
C23 H22 8L6 sing 65 n n 
C23 H21 8L6 sing 66 n n 
C25 H23 8L6 sing 67 n n 
C25 H25 8L6 sing 68 n n 
C25 H24 8L6 sing 69 n n 
C26 H27 8L6 sing 70 n n 
C26 H26 8L6 sing 71 n n 
C27 H28 8L6 sing 72 n n 
C27 H29 8L6 sing 73 n n 
C28 H30 8L6 sing 74 n n 
C28 H31 8L6 sing 75 n n 
C5 H33 8L6 sing 76 n n 
C5 H34 8L6 sing 77 n n 
C5 H35 8L6 sing 78 n n 
C7 H37 8L6 sing 79 n n 
C7 H38 8L6 sing 80 n n 
C7 H39 8L6 sing 81 n n 
C8 H40 8L6 sing 82 n n 
C8 H41 8L6 sing 83 n n 
O2 H42 8L6 sing 84 n n 
O3 H43 8L6 sing 85 n n 
O4 H44 8L6 sing 86 n n 
#
_atom_sites.entry_id                     7S3P 
_atom_sites.fract_transf_matrix[1][1]    0.009857 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00341 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 2 8L6 K 1 501 417 8L6 LIG . 
M 3 CL K 1 502 418 CL CL . 
N 2 8L6 A 1 501 418 8L6 LIG . 
O 3 CL A 1 502 418 CL CL . 
P 2 8L6 B 1 501 417 8L6 LIG . 
Q 2 8L6 C 1 501 417 8L6 LIG . 
R 3 CL C 1 502 418 CL CL . 
S 2 8L6 D 1 501 417 8L6 LIG . 
T 2 8L6 E 1 501 417 8L6 LIG . 
U 3 CL F 1 501 417 CL CL . 
V 2 8L6 F 1 502 417 8L6 LIG . 
W 2 8L6 G 1 501 418 8L6 LIG . 
X 3 CL G 1 502 419 CL CL . 
Y 2 8L6 H 1 501 417 8L6 LIG . 
Z 2 8L6 I 1 501 417 8L6 LIG . 
AA 3 CL I 1 502 1 CL CL . 
BA 2 8L6 J 1 501 417 8L6 LIG . 
CA 4 HOH K 1 601 424 HOH HOH . 
CA 4 HOH K 2 602 420 HOH HOH . 
CA 4 HOH K 3 603 9 HOH HOH . 
CA 4 HOH K 4 604 421 HOH HOH . 
CA 4 HOH K 5 605 422 HOH HOH . 
CA 4 HOH K 6 606 419 HOH HOH . 
DA 4 HOH A 1 601 423 HOH HOH . 
DA 4 HOH A 2 602 424 HOH HOH . 
DA 4 HOH A 3 603 425 HOH HOH . 
DA 4 HOH A 4 604 4 HOH HOH . 
DA 4 HOH A 5 605 427 HOH HOH . 
DA 4 HOH A 6 606 426 HOH HOH . 
DA 4 HOH A 7 607 420 HOH HOH . 
DA 4 HOH A 8 608 421 HOH HOH . 
DA 4 HOH A 9 609 422 HOH HOH . 
EA 4 HOH B 1 601 419 HOH HOH . 
EA 4 HOH B 2 602 421 HOH HOH . 
EA 4 HOH B 3 603 422 HOH HOH . 
EA 4 HOH B 4 604 420 HOH HOH . 
FA 4 HOH C 1 601 419 HOH HOH . 
FA 4 HOH C 2 602 422 HOH HOH . 
FA 4 HOH C 3 603 8 HOH HOH . 
FA 4 HOH C 4 604 423 HOH HOH . 
FA 4 HOH C 5 605 420 HOH HOH . 
GA 4 HOH D 1 601 423 HOH HOH . 
GA 4 HOH D 2 602 425 HOH HOH . 
GA 4 HOH D 3 603 422 HOH HOH . 
GA 4 HOH D 4 604 421 HOH HOH . 
GA 4 HOH D 5 605 426 HOH HOH . 
GA 4 HOH D 6 606 424 HOH HOH . 
GA 4 HOH D 7 607 419 HOH HOH . 
GA 4 HOH D 8 608 420 HOH HOH . 
HA 4 HOH E 1 601 422 HOH HOH . 
HA 4 HOH E 2 602 421 HOH HOH . 
HA 4 HOH E 3 603 424 HOH HOH . 
HA 4 HOH E 4 604 1 HOH HOH . 
HA 4 HOH E 5 605 419 HOH HOH . 
HA 4 HOH E 6 606 420 HOH HOH . 
HA 4 HOH E 7 607 418 HOH HOH . 
HA 4 HOH E 8 608 2 HOH HOH . 
IA 4 HOH F 1 601 423 HOH HOH . 
IA 4 HOH F 2 602 419 HOH HOH . 
IA 4 HOH F 3 603 424 HOH HOH . 
IA 4 HOH F 4 604 418 HOH HOH . 
IA 4 HOH F 5 605 421 HOH HOH . 
IA 4 HOH F 6 606 420 HOH HOH . 
JA 4 HOH G 1 601 423 HOH HOH . 
JA 4 HOH G 2 602 426 HOH HOH . 
JA 4 HOH G 3 603 427 HOH HOH . 
JA 4 HOH G 4 604 421 HOH HOH . 
JA 4 HOH G 5 605 422 HOH HOH . 
JA 4 HOH G 6 606 428 HOH HOH . 
JA 4 HOH G 7 607 420 HOH HOH . 
KA 4 HOH H 1 601 425 HOH HOH . 
KA 4 HOH H 2 602 427 HOH HOH . 
KA 4 HOH H 3 603 3 HOH HOH . 
KA 4 HOH H 4 604 421 HOH HOH . 
KA 4 HOH H 5 605 423 HOH HOH . 
KA 4 HOH H 6 606 424 HOH HOH . 
KA 4 HOH H 7 607 419 HOH HOH . 
KA 4 HOH H 8 608 422 HOH HOH . 
KA 4 HOH H 9 609 420 HOH HOH . 
LA 4 HOH I 1 601 421 HOH HOH . 
LA 4 HOH I 2 602 420 HOH HOH . 
LA 4 HOH I 3 603 422 HOH HOH . 
LA 4 HOH I 4 604 419 HOH HOH . 
LA 4 HOH I 5 605 5 HOH HOH . 
LA 4 HOH I 6 606 6 HOH HOH . 
MA 4 HOH J 1 601 419 HOH HOH . 
MA 4 HOH J 2 602 421 HOH HOH . 
MA 4 HOH J 3 603 420 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 8L6 . . . W 2 16.448 61.283 -5.836 1 43.43 ? C 8L6 501 G 1 
HETATM 2 O O 8L6 . . . W 2 15.3 63.977 -6.62 1 44.36 ? O 8L6 501 G 1 
HETATM 3 C C1 8L6 . . . W 2 16.942 62.179 -6.946 1 50.08 ? C1 8L6 501 G 1 
HETATM 4 C C10 8L6 . . . W 2 18.566 60.034 -7.389 1 47.55 ? C10 8L6 501 G 1 
HETATM 5 C C11 8L6 . . . W 2 20.089 60.263 -7.343 1 41.19 ? C11 8L6 501 G 1 
HETATM 6 C C12 8L6 . . . W 2 20.25 61.763 -7.625 1 42.92 ? C12 8L6 501 G 1 
HETATM 7 C C13 8L6 . . . W 2 21.61 62.23 -8.245 1 38.34 ? C13 8L6 501 G 1 
HETATM 8 C C14 8L6 . . . W 2 22.782 61.858 -7.347 1 40.23 ? C14 8L6 501 G 1 
HETATM 9 C C15 8L6 . . . W 2 24.08 62.415 -7.777 1 32.78 ? C15 8L6 501 G 1 
HETATM 10 C C16 8L6 . . . W 2 24.218 63.665 -8.699 1 59.17 ? C16 8L6 501 G 1 
HETATM 11 C C17 8L6 . . . W 2 22.943 64.245 -9.282 1 59.07 ? C17 8L6 501 G 1 
HETATM 12 C C18 8L6 . . . W 2 22.706 63.917 -10.757 1 39.6 ? C18 8L6 501 G 1 
HETATM 13 C C19 8L6 . . . W 2 21.651 63.763 -8.466 1 51.68 ? C19 8L6 501 G 1 
HETATM 14 C C2 8L6 . . . W 2 15.71 63.01 -7.554 1 45.41 ? C2 8L6 501 G 1 
HETATM 15 C C20 8L6 . . . W 2 20.37 64.253 -9.135 1 40.33 ? C20 8L6 501 G 1 
HETATM 16 C C21 8L6 . . . W 2 19.157 63.568 -8.671 1 39.73 ? C21 8L6 501 G 1 
HETATM 17 C C22 8L6 . . . W 2 19.131 62.1 -8.609 1 47.82 ? C22 8L6 501 G 1 
HETATM 18 C C23 8L6 . . . W 2 19.376 61.497 -10.068 1 44.46 ? C23 8L6 501 G 1 
HETATM 19 C C24 8L6 . . . W 2 18.676 62.525 -12.124 1 54.04 ? C24 8L6 501 G 1 
HETATM 20 C C25 8L6 . . . W 2 17.684 63.4 -12.864 1 47.31 ? C25 8L6 501 G 1 
HETATM 21 C C26 8L6 . . . W 2 25.639 64.108 -9.007 1 60.42 ? C26 8L6 501 G 1 
HETATM 22 C C27 8L6 . . . W 2 25.677 65.597 -8.866 1 63.41 ? C27 8L6 501 G 1 
HETATM 23 C C28 8L6 . . . W 2 24.54 66.327 -8.938 1 65.46 ? C28 8L6 501 G 1 
HETATM 24 C C29 8L6 . . . W 2 23.21 65.731 -9.147 1 53.2 ? C29 8L6 501 G 1 
HETATM 25 C C3 8L6 . . . W 2 14.284 64.795 -6.992 1 48.45 ? C3 8L6 501 G 1 
HETATM 26 C C4 8L6 . . . W 2 14.067 65.227 -8.365 1 50.82 ? C4 8L6 501 G 1 
HETATM 27 C C5 8L6 . . . W 2 12.962 66.194 -8.695 1 40.28 ? C5 8L6 501 G 1 
HETATM 28 C C6 8L6 . . . W 2 14.882 64.715 -9.3 1 39.05 ? C6 8L6 501 G 1 
HETATM 29 C C7 8L6 . . . W 2 14.713 65.11 -10.739 1 41.17 ? C7 8L6 501 G 1 
HETATM 30 C C8 8L6 . . . W 2 15.977 63.747 -8.89 1 41.86 ? C8 8L6 501 G 1 
HETATM 31 C C9 8L6 . . . W 2 17.883 61.333 -7.978 1 51.82 ? C9 8L6 501 G 1 
HETATM 32 O O1 8L6 . . . W 2 13.579 65.094 -6.027 1 36.34 ? O1 8L6 501 G 1 
HETATM 33 O O2 8L6 . . . W 2 17.786 63.189 -6.252 1 50.1 ? O2 8L6 501 G 1 
HETATM 34 O O3 8L6 . . . W 2 17.012 60.988 -9.018 1 58.41 ? O3 8L6 501 G 1 
HETATM 35 O O4 8L6 . . . W 2 20.003 62.455 -6.437 1 56.8 ? O4 8L6 501 G 1 
HETATM 36 O O5 8L6 . . . W 2 18.347 61.829 -11.013 1 54.99 ? O5 8L6 501 G 1 
HETATM 37 O O6 8L6 . . . W 2 19.833 62.428 -12.527 1 57.05 ? O6 8L6 501 G 1 
HETATM 38 O O7 8L6 . . . W 2 24.361 62.294 -9.219 1 49.25 ? O7 8L6 501 G 1 
HETATM 39 O O8 8L6 . . . W 2 22.257 66.507 -9.203 1 61.46 ? O8 8L6 501 G 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           39 
#