data_7S3P
#
_model_server_result.job_id            fBmkHBBlfEN2V2Z-XSIOwQ 
_model_server_result.datetime_utc      '2024-12-29 05:33:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7s3p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":501}' 
#
_entry.id    7S3P 
#
_exptl.entry_id    7S3P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              546.649 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Physachenolide C' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7S3P 
_cell.length_a            101.448 
_cell.length_b            158.535 
_cell.length_c            293.233 
_cell.Z_PDB               88 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7S3P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,L,M,CA 1 1 
B,N,O,DA 2 1 
C,P,EA 3 1 
D,Q,R,FA 4 1 
E,S,GA 5 1 
F,T,HA 6 1 
G,U,V,IA 7 1 
H,W,X,JA 8 1 
I,Y,KA 9 1 
J,Z,AA,LA 10 1 
K,BA,MA 11 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 T N N 
? 2 V N N 
? 2 W N N 
? 2 Y N N 
? 2 Z N N 
? 2 BA N N 
#
_chem_comp.formula           'C30 H42 O9' 
_chem_comp.formula_weight    546.649 
_chem_comp.id                8L6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Physachenolide C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C24 8L6 doub 1 n n 
C25 C24 8L6 sing 2 n n 
C24 O5 8L6 sing 3 n n 
O5 C23 8L6 sing 4 n n 
C18 C17 8L6 sing 5 n n 
C7 C6 8L6 sing 6 n n 
C23 C22 8L6 sing 7 n n 
O7 C16 8L6 sing 8 n n 
O7 C15 8L6 sing 9 n n 
C17 C16 8L6 sing 10 n n 
C17 C29 8L6 sing 11 n n 
C17 C19 8L6 sing 12 n n 
C16 C26 8L6 sing 13 n n 
C16 C15 8L6 sing 14 n n 
C28 C29 8L6 sing 15 n n 
C28 C27 8L6 sing 16 n n 
C29 O8 8L6 doub 17 n n 
C26 C27 8L6 sing 18 n n 
O3 C9 8L6 sing 19 n n 
C6 C8 8L6 sing 20 n n 
C6 C4 8L6 doub 21 n n 
C20 C21 8L6 sing 22 n n 
C20 C19 8L6 sing 23 n n 
C22 C21 8L6 sing 24 n n 
C22 C9 8L6 sing 25 n n 
C22 C12 8L6 sing 26 n n 
C8 C2 8L6 sing 27 n n 
C19 C13 8L6 sing 28 n n 
C13 C14 8L6 sing 29 n n 
C13 C12 8L6 sing 30 n n 
C15 C14 8L6 sing 31 n n 
C5 C4 8L6 sing 32 n n 
C9 C10 8L6 sing 33 n n 
C9 C1 8L6 sing 34 n n 
C4 C3 8L6 sing 35 n n 
C12 C11 8L6 sing 36 n n 
C12 O4 8L6 sing 37 n n 
C10 C11 8L6 sing 38 n n 
C2 C1 8L6 sing 39 n n 
C2 O 8L6 sing 40 n n 
C1 O2 8L6 sing 41 n n 
C1 C 8L6 sing 42 n n 
C3 O 8L6 sing 43 n n 
C3 O1 8L6 doub 44 n n 
C H1 8L6 sing 45 n n 
C H3 8L6 sing 46 n n 
C H2 8L6 sing 47 n n 
C10 H5 8L6 sing 48 n n 
C10 H4 8L6 sing 49 n n 
C11 H7 8L6 sing 50 n n 
C11 H6 8L6 sing 51 n n 
C13 H8 8L6 sing 52 n n 
C14 H9 8L6 sing 53 n n 
C14 H10 8L6 sing 54 n n 
C15 H11 8L6 sing 55 n n 
C18 H12 8L6 sing 56 n n 
C18 H13 8L6 sing 57 n n 
C18 H14 8L6 sing 58 n n 
C19 H15 8L6 sing 59 n n 
C2 H16 8L6 sing 60 n n 
C20 H17 8L6 sing 61 n n 
C20 H18 8L6 sing 62 n n 
C21 H19 8L6 sing 63 n n 
C21 H20 8L6 sing 64 n n 
C23 H22 8L6 sing 65 n n 
C23 H21 8L6 sing 66 n n 
C25 H23 8L6 sing 67 n n 
C25 H25 8L6 sing 68 n n 
C25 H24 8L6 sing 69 n n 
C26 H27 8L6 sing 70 n n 
C26 H26 8L6 sing 71 n n 
C27 H28 8L6 sing 72 n n 
C27 H29 8L6 sing 73 n n 
C28 H30 8L6 sing 74 n n 
C28 H31 8L6 sing 75 n n 
C5 H33 8L6 sing 76 n n 
C5 H34 8L6 sing 77 n n 
C5 H35 8L6 sing 78 n n 
C7 H37 8L6 sing 79 n n 
C7 H38 8L6 sing 80 n n 
C7 H39 8L6 sing 81 n n 
C8 H40 8L6 sing 82 n n 
C8 H41 8L6 sing 83 n n 
O2 H42 8L6 sing 84 n n 
O3 H43 8L6 sing 85 n n 
O4 H44 8L6 sing 86 n n 
#
_atom_sites.entry_id                     7S3P 
_atom_sites.fract_transf_matrix[1][1]    0.009857 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00341 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 2 8L6 K 1 501 417 8L6 LIG . 
M 3 CL K 1 502 418 CL CL . 
N 2 8L6 A 1 501 418 8L6 LIG . 
O 3 CL A 1 502 418 CL CL . 
P 2 8L6 B 1 501 417 8L6 LIG . 
Q 2 8L6 C 1 501 417 8L6 LIG . 
R 3 CL C 1 502 418 CL CL . 
S 2 8L6 D 1 501 417 8L6 LIG . 
T 2 8L6 E 1 501 417 8L6 LIG . 
U 3 CL F 1 501 417 CL CL . 
V 2 8L6 F 1 502 417 8L6 LIG . 
W 2 8L6 G 1 501 418 8L6 LIG . 
X 3 CL G 1 502 419 CL CL . 
Y 2 8L6 H 1 501 417 8L6 LIG . 
Z 2 8L6 I 1 501 417 8L6 LIG . 
AA 3 CL I 1 502 1 CL CL . 
BA 2 8L6 J 1 501 417 8L6 LIG . 
CA 4 HOH K 1 601 424 HOH HOH . 
CA 4 HOH K 2 602 420 HOH HOH . 
CA 4 HOH K 3 603 9 HOH HOH . 
CA 4 HOH K 4 604 421 HOH HOH . 
CA 4 HOH K 5 605 422 HOH HOH . 
CA 4 HOH K 6 606 419 HOH HOH . 
DA 4 HOH A 1 601 423 HOH HOH . 
DA 4 HOH A 2 602 424 HOH HOH . 
DA 4 HOH A 3 603 425 HOH HOH . 
DA 4 HOH A 4 604 4 HOH HOH . 
DA 4 HOH A 5 605 427 HOH HOH . 
DA 4 HOH A 6 606 426 HOH HOH . 
DA 4 HOH A 7 607 420 HOH HOH . 
DA 4 HOH A 8 608 421 HOH HOH . 
DA 4 HOH A 9 609 422 HOH HOH . 
EA 4 HOH B 1 601 419 HOH HOH . 
EA 4 HOH B 2 602 421 HOH HOH . 
EA 4 HOH B 3 603 422 HOH HOH . 
EA 4 HOH B 4 604 420 HOH HOH . 
FA 4 HOH C 1 601 419 HOH HOH . 
FA 4 HOH C 2 602 422 HOH HOH . 
FA 4 HOH C 3 603 8 HOH HOH . 
FA 4 HOH C 4 604 423 HOH HOH . 
FA 4 HOH C 5 605 420 HOH HOH . 
GA 4 HOH D 1 601 423 HOH HOH . 
GA 4 HOH D 2 602 425 HOH HOH . 
GA 4 HOH D 3 603 422 HOH HOH . 
GA 4 HOH D 4 604 421 HOH HOH . 
GA 4 HOH D 5 605 426 HOH HOH . 
GA 4 HOH D 6 606 424 HOH HOH . 
GA 4 HOH D 7 607 419 HOH HOH . 
GA 4 HOH D 8 608 420 HOH HOH . 
HA 4 HOH E 1 601 422 HOH HOH . 
HA 4 HOH E 2 602 421 HOH HOH . 
HA 4 HOH E 3 603 424 HOH HOH . 
HA 4 HOH E 4 604 1 HOH HOH . 
HA 4 HOH E 5 605 419 HOH HOH . 
HA 4 HOH E 6 606 420 HOH HOH . 
HA 4 HOH E 7 607 418 HOH HOH . 
HA 4 HOH E 8 608 2 HOH HOH . 
IA 4 HOH F 1 601 423 HOH HOH . 
IA 4 HOH F 2 602 419 HOH HOH . 
IA 4 HOH F 3 603 424 HOH HOH . 
IA 4 HOH F 4 604 418 HOH HOH . 
IA 4 HOH F 5 605 421 HOH HOH . 
IA 4 HOH F 6 606 420 HOH HOH . 
JA 4 HOH G 1 601 423 HOH HOH . 
JA 4 HOH G 2 602 426 HOH HOH . 
JA 4 HOH G 3 603 427 HOH HOH . 
JA 4 HOH G 4 604 421 HOH HOH . 
JA 4 HOH G 5 605 422 HOH HOH . 
JA 4 HOH G 6 606 428 HOH HOH . 
JA 4 HOH G 7 607 420 HOH HOH . 
KA 4 HOH H 1 601 425 HOH HOH . 
KA 4 HOH H 2 602 427 HOH HOH . 
KA 4 HOH H 3 603 3 HOH HOH . 
KA 4 HOH H 4 604 421 HOH HOH . 
KA 4 HOH H 5 605 423 HOH HOH . 
KA 4 HOH H 6 606 424 HOH HOH . 
KA 4 HOH H 7 607 419 HOH HOH . 
KA 4 HOH H 8 608 422 HOH HOH . 
KA 4 HOH H 9 609 420 HOH HOH . 
LA 4 HOH I 1 601 421 HOH HOH . 
LA 4 HOH I 2 602 420 HOH HOH . 
LA 4 HOH I 3 603 422 HOH HOH . 
LA 4 HOH I 4 604 419 HOH HOH . 
LA 4 HOH I 5 605 5 HOH HOH . 
LA 4 HOH I 6 606 6 HOH HOH . 
MA 4 HOH J 1 601 419 HOH HOH . 
MA 4 HOH J 2 602 421 HOH HOH . 
MA 4 HOH J 3 603 420 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 8L6 . . . Y 2 34.913 1.923 -31.602 1 44.51 ? C 8L6 501 H 1 
HETATM 2 O O 8L6 . . . Y 2 34.605 4.897 -30.94 1 51.65 ? O 8L6 501 H 1 
HETATM 3 C C1 8L6 . . . Y 2 33.966 2.543 -30.597 1 49.5 ? C1 8L6 501 H 1 
HETATM 4 C C10 8L6 . . . Y 2 33.467 -0.085 -30.052 1 53.06 ? C10 8L6 501 H 1 
HETATM 5 C C11 8L6 . . . Y 2 32.033 -0.606 -30.307 1 44.16 ? C11 8L6 501 H 1 
HETATM 6 C C12 8L6 . . . Y 2 31.138 0.642 -30.178 1 50.46 ? C12 8L6 501 H 1 
HETATM 7 C C13 8L6 . . . Y 2 29.662 0.422 -29.674 1 54.85 ? C13 8L6 501 H 1 
HETATM 8 C C14 8L6 . . . Y 2 28.876 -0.512 -30.592 1 48.51 ? C14 8L6 501 H 1 
HETATM 9 C C15 8L6 . . . Y 2 27.442 -0.645 -30.239 1 55.52 ? C15 8L6 501 H 1 
HETATM 10 C C16 8L6 . . . Y 2 26.658 0.421 -29.41 1 63.33 ? C16 8L6 501 H 1 
HETATM 11 C C17 8L6 . . . Y 2 27.454 1.571 -28.826 1 60.54 ? C17 8L6 501 H 1 
HETATM 12 C C18 8L6 . . . Y 2 27.744 1.452 -27.333 1 55.17 ? C18 8L6 501 H 1 
HETATM 13 C C19 8L6 . . . Y 2 28.865 1.753 -29.57 1 58.7 ? C19 8L6 501 H 1 
HETATM 14 C C2 8L6 . . . Y 2 34.627 3.871 -29.974 1 46.34 ? C2 8L6 501 H 1 
HETATM 15 C C20 8L6 . . . Y 2 29.697 2.847 -28.9 1 43.71 ? C20 8L6 501 H 1 
HETATM 16 C C21 8L6 . . . Y 2 31.122 2.811 -29.25 1 50.08 ? C21 8L6 501 H 1 
HETATM 17 C C22 8L6 . . . Y 2 31.845 1.536 -29.147 1 56.1 ? C22 8L6 501 H 1 
HETATM 18 C C23 8L6 . . . Y 2 31.71 0.984 -27.651 1 56.18 ? C23 8L6 501 H 1 
HETATM 19 C C24 8L6 . . . Y 2 31.963 2.391 -25.702 1 61.69 ? C24 8L6 501 H 1 
HETATM 20 C C25 8L6 . . . Y 2 32.672 3.523 -24.992 1 52.06 ? C25 8L6 501 H 1 
HETATM 21 C C26 8L6 . . . Y 2 25.179 0.15 -29.196 1 64.19 ? C26 8L6 501 H 1 
HETATM 22 C C27 8L6 . . . Y 2 24.467 1.403 -29.593 1 69.25 ? C27 8L6 501 H 1 
HETATM 23 C C28 8L6 . . . Y 2 25.101 2.596 -29.51 1 67.63 ? C28 8L6 501 H 1 
HETATM 24 C C29 8L6 . . . Y 2 26.495 2.734 -29.043 1 61.97 ? C29 8L6 501 H 1 
HETATM 25 C C3 8L6 . . . Y 2 34.965 6.151 -30.55 1 64.29 ? C3 8L6 501 H 1 
HETATM 26 C C4 8L6 . . . Y 2 34.705 6.69 -29.226 1 60.37 ? C4 8L6 501 H 1 
HETATM 27 C C5 8L6 . . . Y 2 34.987 8.137 -28.924 1 60.04 ? C5 8L6 501 H 1 
HETATM 28 C C6 8L6 . . . Y 2 34.217 5.843 -28.307 1 57.65 ? C6 8L6 501 H 1 
HETATM 29 C C7 8L6 . . . Y 2 33.927 6.341 -26.916 1 54.48 ? C7 8L6 501 H 1 
HETATM 30 C C8 8L6 . . . Y 2 33.947 4.388 -28.672 1 53.54 ? C8 8L6 501 H 1 
HETATM 31 C C9 8L6 . . . Y 2 33.385 1.417 -29.561 1 57.56 ? C9 8L6 501 H 1 
HETATM 32 O O1 8L6 . . . Y 2 35.535 6.756 -31.462 1 61.54 ? O1 8L6 501 H 1 
HETATM 33 O O2 8L6 . . . Y 2 32.828 3.016 -31.423 1 56.05 ? O2 8L6 501 H 1 
HETATM 34 O O3 8L6 . . . Y 2 34.158 1.595 -28.405 1 57.44 ? O3 8L6 501 H 1 
HETATM 35 O O4 8L6 . . . Y 2 31.133 1.303 -31.411 1 60.73 ? O4 8L6 501 H 1 
HETATM 36 O O5 8L6 . . . Y 2 32.541 1.686 -26.71 1 67.61 ? O5 8L6 501 H 1 
HETATM 37 O O6 8L6 . . . Y 2 30.822 2.084 -25.365 1 63.92 ? O6 8L6 501 H 1 
HETATM 38 O O7 8L6 . . . Y 2 27.154 -0.826 -28.803 1 68.57 ? O7 8L6 501 H 1 
HETATM 39 O O8 8L6 . . . Y 2 26.898 3.878 -28.826 1 67.96 ? O8 8L6 501 H 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#