data_7S41 # _model_server_result.job_id 23xfIKcNQfbCDYTZp0aVKA _model_server_result.datetime_utc '2024-11-29 00:05:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7S41 # _exptl.entry_id 7S41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S41 _cell.length_a 102.965 _cell.length_b 102.965 _cell.length_c 102.965 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 80 1_555 C S1P COA . A COA 202 1_555 A A ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc1 A OD1 ASN 130 A ASN 108 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 A OD1 ASN 130 A ASN 108 1_555 H NA NA . A NA 207 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc3 H NA NA . A NA 207 1_555 I O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc4 H NA NA . A NA 207 1_555 I O HOH . A HOH 304 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 238 n n C1 C2 EDO sing 239 n n C1 H11 EDO sing 240 n n C1 H12 EDO sing 241 n n O1 HO1 EDO sing 242 n n C2 O2 EDO sing 243 n n C2 H21 EDO sing 244 n n C2 H22 EDO sing 245 n n O2 HO2 EDO sing 246 n n # _atom_sites.entry_id 7S41 _atom_sites.fract_transf_matrix[1][1] 0.009712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 87N A 1 201 200 87N TQA . C 3 COA A 1 202 80 COA WAG . D 4 EDO A 1 203 1 EDO EDO . E 4 EDO A 1 204 2 EDO EDO . F 4 EDO A 1 205 3 EDO EDO . G 4 EDO A 1 206 4 EDO EDO . H 5 NA A 1 207 1 NA NA . I 6 HOH A 1 301 218 HOH HOH . I 6 HOH A 2 302 229 HOH HOH . I 6 HOH A 3 303 227 HOH HOH . I 6 HOH A 4 304 205 HOH HOH . I 6 HOH A 5 305 102 HOH HOH . I 6 HOH A 6 306 152 HOH HOH . I 6 HOH A 7 307 34 HOH HOH . I 6 HOH A 8 308 222 HOH HOH . I 6 HOH A 9 309 215 HOH HOH . I 6 HOH A 10 310 162 HOH HOH . I 6 HOH A 11 311 206 HOH HOH . I 6 HOH A 12 312 11 HOH HOH . I 6 HOH A 13 313 168 HOH HOH . I 6 HOH A 14 314 88 HOH HOH . I 6 HOH A 15 315 207 HOH HOH . I 6 HOH A 16 316 158 HOH HOH . I 6 HOH A 17 317 104 HOH HOH . I 6 HOH A 18 318 198 HOH HOH . I 6 HOH A 19 319 19 HOH HOH . I 6 HOH A 20 320 94 HOH HOH . I 6 HOH A 21 321 161 HOH HOH . I 6 HOH A 22 322 15 HOH HOH . I 6 HOH A 23 323 62 HOH HOH . I 6 HOH A 24 324 93 HOH HOH . I 6 HOH A 25 325 68 HOH HOH . I 6 HOH A 26 326 188 HOH HOH . I 6 HOH A 27 327 3 HOH HOH . I 6 HOH A 28 328 37 HOH HOH . I 6 HOH A 29 329 57 HOH HOH . I 6 HOH A 30 330 163 HOH HOH . I 6 HOH A 31 331 99 HOH HOH . I 6 HOH A 32 332 72 HOH HOH . I 6 HOH A 33 333 179 HOH HOH . I 6 HOH A 34 334 124 HOH HOH . I 6 HOH A 35 335 195 HOH HOH . I 6 HOH A 36 336 60 HOH HOH . I 6 HOH A 37 337 115 HOH HOH . I 6 HOH A 38 338 52 HOH HOH . I 6 HOH A 39 339 25 HOH HOH . I 6 HOH A 40 340 107 HOH HOH . I 6 HOH A 41 341 149 HOH HOH . I 6 HOH A 42 342 127 HOH HOH . I 6 HOH A 43 343 156 HOH HOH . I 6 HOH A 44 344 20 HOH HOH . I 6 HOH A 45 345 12 HOH HOH . I 6 HOH A 46 346 53 HOH HOH . I 6 HOH A 47 347 196 HOH HOH . I 6 HOH A 48 348 109 HOH HOH . I 6 HOH A 49 349 100 HOH HOH . I 6 HOH A 50 350 164 HOH HOH . I 6 HOH A 51 351 61 HOH HOH . I 6 HOH A 52 352 148 HOH HOH . I 6 HOH A 53 353 33 HOH HOH . I 6 HOH A 54 354 45 HOH HOH . I 6 HOH A 55 355 147 HOH HOH . I 6 HOH A 56 356 74 HOH HOH . I 6 HOH A 57 357 13 HOH HOH . I 6 HOH A 58 358 59 HOH HOH . I 6 HOH A 59 359 8 HOH HOH . I 6 HOH A 60 360 63 HOH HOH . I 6 HOH A 61 361 169 HOH HOH . I 6 HOH A 62 362 17 HOH HOH . I 6 HOH A 63 363 50 HOH HOH . I 6 HOH A 64 364 145 HOH HOH . I 6 HOH A 65 365 41 HOH HOH . I 6 HOH A 66 366 7 HOH HOH . I 6 HOH A 67 367 44 HOH HOH . I 6 HOH A 68 368 49 HOH HOH . I 6 HOH A 69 369 73 HOH HOH . I 6 HOH A 70 370 6 HOH HOH . I 6 HOH A 71 371 217 HOH HOH . I 6 HOH A 72 372 223 HOH HOH . I 6 HOH A 73 373 42 HOH HOH . I 6 HOH A 74 374 30 HOH HOH . I 6 HOH A 75 375 75 HOH HOH . I 6 HOH A 76 376 5 HOH HOH . I 6 HOH A 77 377 87 HOH HOH . I 6 HOH A 78 378 27 HOH HOH . I 6 HOH A 79 379 31 HOH HOH . I 6 HOH A 80 380 155 HOH HOH . I 6 HOH A 81 381 114 HOH HOH . I 6 HOH A 82 382 1 HOH HOH . I 6 HOH A 83 383 43 HOH HOH . I 6 HOH A 84 384 18 HOH HOH . I 6 HOH A 85 385 55 HOH HOH . I 6 HOH A 86 386 166 HOH HOH . I 6 HOH A 87 387 54 HOH HOH . I 6 HOH A 88 388 159 HOH HOH . I 6 HOH A 89 389 97 HOH HOH . I 6 HOH A 90 390 91 HOH HOH . I 6 HOH A 91 391 36 HOH HOH . I 6 HOH A 92 392 48 HOH HOH . I 6 HOH A 93 393 23 HOH HOH . I 6 HOH A 94 394 39 HOH HOH . I 6 HOH A 95 395 2 HOH HOH . I 6 HOH A 96 396 47 HOH HOH . I 6 HOH A 97 397 180 HOH HOH . I 6 HOH A 98 398 228 HOH HOH . I 6 HOH A 99 399 64 HOH HOH . I 6 HOH A 100 400 108 HOH HOH . I 6 HOH A 101 401 170 HOH HOH . I 6 HOH A 102 402 116 HOH HOH . I 6 HOH A 103 403 58 HOH HOH . I 6 HOH A 104 404 209 HOH HOH . I 6 HOH A 105 405 16 HOH HOH . I 6 HOH A 106 406 14 HOH HOH . I 6 HOH A 107 407 38 HOH HOH . I 6 HOH A 108 408 51 HOH HOH . I 6 HOH A 109 409 24 HOH HOH . I 6 HOH A 110 410 79 HOH HOH . I 6 HOH A 111 411 32 HOH HOH . I 6 HOH A 112 412 131 HOH HOH . I 6 HOH A 113 413 90 HOH HOH . I 6 HOH A 114 414 10 HOH HOH . I 6 HOH A 115 415 178 HOH HOH . I 6 HOH A 116 416 216 HOH HOH . I 6 HOH A 117 417 46 HOH HOH . I 6 HOH A 118 418 183 HOH HOH . I 6 HOH A 119 419 186 HOH HOH . I 6 HOH A 120 420 4 HOH HOH . I 6 HOH A 121 421 56 HOH HOH . I 6 HOH A 122 422 219 HOH HOH . I 6 HOH A 123 423 110 HOH HOH . I 6 HOH A 124 424 21 HOH HOH . I 6 HOH A 125 425 106 HOH HOH . I 6 HOH A 126 426 172 HOH HOH . I 6 HOH A 127 427 67 HOH HOH . I 6 HOH A 128 428 201 HOH HOH . I 6 HOH A 129 429 81 HOH HOH . I 6 HOH A 130 430 185 HOH HOH . I 6 HOH A 131 431 199 HOH HOH . I 6 HOH A 132 432 210 HOH HOH . I 6 HOH A 133 433 146 HOH HOH . I 6 HOH A 134 434 167 HOH HOH . I 6 HOH A 135 435 77 HOH HOH . I 6 HOH A 136 436 103 HOH HOH . I 6 HOH A 137 437 220 HOH HOH . I 6 HOH A 138 438 193 HOH HOH . I 6 HOH A 139 439 129 HOH HOH . I 6 HOH A 140 440 123 HOH HOH . I 6 HOH A 141 441 221 HOH HOH . I 6 HOH A 142 442 224 HOH HOH . I 6 HOH A 143 443 181 HOH HOH . I 6 HOH A 144 444 135 HOH HOH . I 6 HOH A 145 445 153 HOH HOH . I 6 HOH A 146 446 130 HOH HOH . I 6 HOH A 147 447 200 HOH HOH . I 6 HOH A 148 448 139 HOH HOH . I 6 HOH A 149 449 101 HOH HOH . I 6 HOH A 150 450 176 HOH HOH . I 6 HOH A 151 451 197 HOH HOH . I 6 HOH A 152 452 98 HOH HOH . I 6 HOH A 153 453 192 HOH HOH . I 6 HOH A 154 454 85 HOH HOH . I 6 HOH A 155 455 136 HOH HOH . I 6 HOH A 156 456 151 HOH HOH . I 6 HOH A 157 457 65 HOH HOH . I 6 HOH A 158 458 182 HOH HOH . I 6 HOH A 159 459 226 HOH HOH . I 6 HOH A 160 460 89 HOH HOH . I 6 HOH A 161 461 177 HOH HOH . I 6 HOH A 162 462 187 HOH HOH . I 6 HOH A 163 463 117 HOH HOH . I 6 HOH A 164 464 76 HOH HOH . I 6 HOH A 165 465 194 HOH HOH . I 6 HOH A 166 466 175 HOH HOH . I 6 HOH A 167 467 208 HOH HOH . I 6 HOH A 168 468 157 HOH HOH . I 6 HOH A 169 469 22 HOH HOH . I 6 HOH A 170 470 150 HOH HOH . I 6 HOH A 171 471 202 HOH HOH . I 6 HOH A 172 472 174 HOH HOH . I 6 HOH A 173 473 82 HOH HOH . I 6 HOH A 174 474 144 HOH HOH . I 6 HOH A 175 475 203 HOH HOH . I 6 HOH A 176 476 165 HOH HOH . I 6 HOH A 177 477 190 HOH HOH . I 6 HOH A 178 478 40 HOH HOH . I 6 HOH A 179 479 225 HOH HOH . I 6 HOH A 180 480 29 HOH HOH . I 6 HOH A 181 481 128 HOH HOH . I 6 HOH A 182 482 212 HOH HOH . I 6 HOH A 183 483 173 HOH HOH . I 6 HOH A 184 484 80 HOH HOH . I 6 HOH A 185 485 211 HOH HOH . I 6 HOH A 186 486 120 HOH HOH . I 6 HOH A 187 487 213 HOH HOH . I 6 HOH A 188 488 66 HOH HOH . I 6 HOH A 189 489 119 HOH HOH . I 6 HOH A 190 490 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 40.865 -9.16 24.918 1 29.58 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 4 41.943 -9.517 25.76 1 30.08 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 4 41.106 -9.507 23.507 1 32.47 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 4 41.359 -8.382 22.697 1 40.54 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #