data_7S42
#
_model_server_result.job_id            BbxsU6ldlHZ7CmPwcxMJTQ 
_model_server_result.datetime_utc      '2024-10-11 13:22:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7s42 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    7S42 
#
_exptl.entry_id    7S42 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7S42 
_cell.length_a            103.438 
_cell.length_b            103.438 
_cell.length_c            103.438 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7S42 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 
3 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 102 A CYS 80 1_555 C S1P COA . A COA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc1 A O TYR 106 A TYR 84 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc2 J NA NA . A NA 209 1_555 K O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc3 J NA NA . A NA 209 1_555 K O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc4 J NA NA . A NA 209 1_555 K O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc5 J NA NA . A NA 209 1_555 K O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc6 J NA NA . A NA 209 1_555 K O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 238 n n 
C1 C2 EDO sing 239 n n 
C1 H11 EDO sing 240 n n 
C1 H12 EDO sing 241 n n 
O1 HO1 EDO sing 242 n n 
C2 O2 EDO sing 243 n n 
C2 H21 EDO sing 244 n n 
C2 H22 EDO sing 245 n n 
O2 HO2 EDO sing 246 n n 
#
_atom_sites.entry_id                     7S42 
_atom_sites.fract_transf_matrix[1][1]    0.009668 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009668 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009668 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 87Z A 1 201 201 87Z TFA . 
C 3 COA A 1 202 80 COA WAG . 
D 4 EDO A 1 203 1 EDO EDO . 
E 4 EDO A 1 204 2 EDO EDO . 
F 4 EDO A 1 205 3 EDO EDO . 
G 4 EDO A 1 206 4 EDO EDO . 
H 4 EDO A 1 207 5 EDO EDO . 
I 4 EDO A 1 208 6 EDO EDO . 
J 5 NA A 1 209 1 NA NA . 
K 6 HOH A 1 301 218 HOH HOH . 
K 6 HOH A 2 302 246 HOH HOH . 
K 6 HOH A 3 303 198 HOH HOH . 
K 6 HOH A 4 304 266 HOH HOH . 
K 6 HOH A 5 305 238 HOH HOH . 
K 6 HOH A 6 306 183 HOH HOH . 
K 6 HOH A 7 307 201 HOH HOH . 
K 6 HOH A 8 308 117 HOH HOH . 
K 6 HOH A 9 309 204 HOH HOH . 
K 6 HOH A 10 310 291 HOH HOH . 
K 6 HOH A 11 311 288 HOH HOH . 
K 6 HOH A 12 312 221 HOH HOH . 
K 6 HOH A 13 313 267 HOH HOH . 
K 6 HOH A 14 314 283 HOH HOH . 
K 6 HOH A 15 315 215 HOH HOH . 
K 6 HOH A 16 316 145 HOH HOH . 
K 6 HOH A 17 317 270 HOH HOH . 
K 6 HOH A 18 318 88 HOH HOH . 
K 6 HOH A 19 319 276 HOH HOH . 
K 6 HOH A 20 320 107 HOH HOH . 
K 6 HOH A 21 321 102 HOH HOH . 
K 6 HOH A 22 322 34 HOH HOH . 
K 6 HOH A 23 323 182 HOH HOH . 
K 6 HOH A 24 324 285 HOH HOH . 
K 6 HOH A 25 325 162 HOH HOH . 
K 6 HOH A 26 326 37 HOH HOH . 
K 6 HOH A 27 327 158 HOH HOH . 
K 6 HOH A 28 328 244 HOH HOH . 
K 6 HOH A 29 329 286 HOH HOH . 
K 6 HOH A 30 330 163 HOH HOH . 
K 6 HOH A 31 331 19 HOH HOH . 
K 6 HOH A 32 332 80 HOH HOH . 
K 6 HOH A 33 333 169 HOH HOH . 
K 6 HOH A 34 334 229 HOH HOH . 
K 6 HOH A 35 335 73 HOH HOH . 
K 6 HOH A 36 336 97 HOH HOH . 
K 6 HOH A 37 337 93 HOH HOH . 
K 6 HOH A 38 338 161 HOH HOH . 
K 6 HOH A 39 339 74 HOH HOH . 
K 6 HOH A 40 340 196 HOH HOH . 
K 6 HOH A 41 341 230 HOH HOH . 
K 6 HOH A 42 342 11 HOH HOH . 
K 6 HOH A 43 343 60 HOH HOH . 
K 6 HOH A 44 344 72 HOH HOH . 
K 6 HOH A 45 345 63 HOH HOH . 
K 6 HOH A 46 346 15 HOH HOH . 
K 6 HOH A 47 347 25 HOH HOH . 
K 6 HOH A 48 348 61 HOH HOH . 
K 6 HOH A 49 349 3 HOH HOH . 
K 6 HOH A 50 350 217 HOH HOH . 
K 6 HOH A 51 351 235 HOH HOH . 
K 6 HOH A 52 352 262 HOH HOH . 
K 6 HOH A 53 353 17 HOH HOH . 
K 6 HOH A 54 354 52 HOH HOH . 
K 6 HOH A 55 355 57 HOH HOH . 
K 6 HOH A 56 356 115 HOH HOH . 
K 6 HOH A 57 357 188 HOH HOH . 
K 6 HOH A 58 358 149 HOH HOH . 
K 6 HOH A 59 359 31 HOH HOH . 
K 6 HOH A 60 360 148 HOH HOH . 
K 6 HOH A 61 361 116 HOH HOH . 
K 6 HOH A 62 362 292 HOH HOH . 
K 6 HOH A 63 363 8 HOH HOH . 
K 6 HOH A 64 364 168 HOH HOH . 
K 6 HOH A 65 365 104 HOH HOH . 
K 6 HOH A 66 366 127 HOH HOH . 
K 6 HOH A 67 367 47 HOH HOH . 
K 6 HOH A 68 368 55 HOH HOH . 
K 6 HOH A 69 369 250 HOH HOH . 
K 6 HOH A 70 370 43 HOH HOH . 
K 6 HOH A 71 371 48 HOH HOH . 
K 6 HOH A 72 372 109 HOH HOH . 
K 6 HOH A 73 373 44 HOH HOH . 
K 6 HOH A 74 374 41 HOH HOH . 
K 6 HOH A 75 375 33 HOH HOH . 
K 6 HOH A 76 376 68 HOH HOH . 
K 6 HOH A 77 377 179 HOH HOH . 
K 6 HOH A 78 378 12 HOH HOH . 
K 6 HOH A 79 379 62 HOH HOH . 
K 6 HOH A 80 380 20 HOH HOH . 
K 6 HOH A 81 381 124 HOH HOH . 
K 6 HOH A 82 382 18 HOH HOH . 
K 6 HOH A 83 383 206 HOH HOH . 
K 6 HOH A 84 384 94 HOH HOH . 
K 6 HOH A 85 385 45 HOH HOH . 
K 6 HOH A 86 386 50 HOH HOH . 
K 6 HOH A 87 387 99 HOH HOH . 
K 6 HOH A 88 388 166 HOH HOH . 
K 6 HOH A 89 389 255 HOH HOH . 
K 6 HOH A 90 390 91 HOH HOH . 
K 6 HOH A 91 391 49 HOH HOH . 
K 6 HOH A 92 392 13 HOH HOH . 
K 6 HOH A 93 393 254 HOH HOH . 
K 6 HOH A 94 394 6 HOH HOH . 
K 6 HOH A 95 395 5 HOH HOH . 
K 6 HOH A 96 396 42 HOH HOH . 
K 6 HOH A 97 397 159 HOH HOH . 
K 6 HOH A 98 398 263 HOH HOH . 
K 6 HOH A 99 399 1 HOH HOH . 
K 6 HOH A 100 400 155 HOH HOH . 
K 6 HOH A 101 401 59 HOH HOH . 
K 6 HOH A 102 402 156 HOH HOH . 
K 6 HOH A 103 403 7 HOH HOH . 
K 6 HOH A 104 404 14 HOH HOH . 
K 6 HOH A 105 405 24 HOH HOH . 
K 6 HOH A 106 406 100 HOH HOH . 
K 6 HOH A 107 407 27 HOH HOH . 
K 6 HOH A 108 408 114 HOH HOH . 
K 6 HOH A 109 409 110 HOH HOH . 
K 6 HOH A 110 410 64 HOH HOH . 
K 6 HOH A 111 411 147 HOH HOH . 
K 6 HOH A 112 412 51 HOH HOH . 
K 6 HOH A 113 413 197 HOH HOH . 
K 6 HOH A 114 414 79 HOH HOH . 
K 6 HOH A 115 415 287 HOH HOH . 
K 6 HOH A 116 416 240 HOH HOH . 
K 6 HOH A 117 417 241 HOH HOH . 
K 6 HOH A 118 418 216 HOH HOH . 
K 6 HOH A 119 419 30 HOH HOH . 
K 6 HOH A 120 420 239 HOH HOH . 
K 6 HOH A 121 421 87 HOH HOH . 
K 6 HOH A 122 422 199 HOH HOH . 
K 6 HOH A 123 423 178 HOH HOH . 
K 6 HOH A 124 424 228 HOH HOH . 
K 6 HOH A 125 425 23 HOH HOH . 
K 6 HOH A 126 426 90 HOH HOH . 
K 6 HOH A 127 427 232 HOH HOH . 
K 6 HOH A 128 428 54 HOH HOH . 
K 6 HOH A 129 429 2 HOH HOH . 
K 6 HOH A 130 430 36 HOH HOH . 
K 6 HOH A 131 431 58 HOH HOH . 
K 6 HOH A 132 432 247 HOH HOH . 
K 6 HOH A 133 433 219 HOH HOH . 
K 6 HOH A 134 434 181 HOH HOH . 
K 6 HOH A 135 435 39 HOH HOH . 
K 6 HOH A 136 436 131 HOH HOH . 
K 6 HOH A 137 437 170 HOH HOH . 
K 6 HOH A 138 438 106 HOH HOH . 
K 6 HOH A 139 439 253 HOH HOH . 
K 6 HOH A 140 440 75 HOH HOH . 
K 6 HOH A 141 441 180 HOH HOH . 
K 6 HOH A 142 442 164 HOH HOH . 
K 6 HOH A 143 443 32 HOH HOH . 
K 6 HOH A 144 444 209 HOH HOH . 
K 6 HOH A 145 445 234 HOH HOH . 
K 6 HOH A 146 446 135 HOH HOH . 
K 6 HOH A 147 447 46 HOH HOH . 
K 6 HOH A 148 448 187 HOH HOH . 
K 6 HOH A 149 449 277 HOH HOH . 
K 6 HOH A 150 450 272 HOH HOH . 
K 6 HOH A 151 451 167 HOH HOH . 
K 6 HOH A 152 452 282 HOH HOH . 
K 6 HOH A 153 453 16 HOH HOH . 
K 6 HOH A 154 454 172 HOH HOH . 
K 6 HOH A 155 455 10 HOH HOH . 
K 6 HOH A 156 456 81 HOH HOH . 
K 6 HOH A 157 457 108 HOH HOH . 
K 6 HOH A 158 458 151 HOH HOH . 
K 6 HOH A 159 459 200 HOH HOH . 
K 6 HOH A 160 460 103 HOH HOH . 
K 6 HOH A 161 461 269 HOH HOH . 
K 6 HOH A 162 462 4 HOH HOH . 
K 6 HOH A 163 463 257 HOH HOH . 
K 6 HOH A 164 464 38 HOH HOH . 
K 6 HOH A 165 465 185 HOH HOH . 
K 6 HOH A 166 466 77 HOH HOH . 
K 6 HOH A 167 467 67 HOH HOH . 
K 6 HOH A 168 468 171 HOH HOH . 
K 6 HOH A 169 469 21 HOH HOH . 
K 6 HOH A 170 470 281 HOH HOH . 
K 6 HOH A 171 471 193 HOH HOH . 
K 6 HOH A 172 472 279 HOH HOH . 
K 6 HOH A 173 473 236 HOH HOH . 
K 6 HOH A 174 474 123 HOH HOH . 
K 6 HOH A 175 475 284 HOH HOH . 
K 6 HOH A 176 476 139 HOH HOH . 
K 6 HOH A 177 477 210 HOH HOH . 
K 6 HOH A 178 478 243 HOH HOH . 
K 6 HOH A 179 479 268 HOH HOH . 
K 6 HOH A 180 480 213 HOH HOH . 
K 6 HOH A 181 481 290 HOH HOH . 
K 6 HOH A 182 482 130 HOH HOH . 
K 6 HOH A 183 483 153 HOH HOH . 
K 6 HOH A 184 484 223 HOH HOH . 
K 6 HOH A 185 485 265 HOH HOH . 
K 6 HOH A 186 486 98 HOH HOH . 
K 6 HOH A 187 487 136 HOH HOH . 
K 6 HOH A 188 488 259 HOH HOH . 
K 6 HOH A 189 489 101 HOH HOH . 
K 6 HOH A 190 490 192 HOH HOH . 
K 6 HOH A 191 491 65 HOH HOH . 
K 6 HOH A 192 492 227 HOH HOH . 
K 6 HOH A 193 493 231 HOH HOH . 
K 6 HOH A 194 494 176 HOH HOH . 
K 6 HOH A 195 495 225 HOH HOH . 
K 6 HOH A 196 496 85 HOH HOH . 
K 6 HOH A 197 497 174 HOH HOH . 
K 6 HOH A 198 498 226 HOH HOH . 
K 6 HOH A 199 499 22 HOH HOH . 
K 6 HOH A 200 500 89 HOH HOH . 
K 6 HOH A 201 501 261 HOH HOH . 
K 6 HOH A 202 502 82 HOH HOH . 
K 6 HOH A 203 503 208 HOH HOH . 
K 6 HOH A 204 504 76 HOH HOH . 
K 6 HOH A 205 505 278 HOH HOH . 
K 6 HOH A 206 506 150 HOH HOH . 
K 6 HOH A 207 507 157 HOH HOH . 
K 6 HOH A 208 508 29 HOH HOH . 
K 6 HOH A 209 509 258 HOH HOH . 
K 6 HOH A 210 510 245 HOH HOH . 
K 6 HOH A 211 511 256 HOH HOH . 
K 6 HOH A 212 512 280 HOH HOH . 
K 6 HOH A 213 513 249 HOH HOH . 
K 6 HOH A 214 514 144 HOH HOH . 
K 6 HOH A 215 515 194 HOH HOH . 
K 6 HOH A 216 516 224 HOH HOH . 
K 6 HOH A 217 517 289 HOH HOH . 
K 6 HOH A 218 518 242 HOH HOH . 
K 6 HOH A 219 519 40 HOH HOH . 
K 6 HOH A 220 520 128 HOH HOH . 
K 6 HOH A 221 521 233 HOH HOH . 
K 6 HOH A 222 522 275 HOH HOH . 
K 6 HOH A 223 523 264 HOH HOH . 
K 6 HOH A 224 524 66 HOH HOH . 
K 6 HOH A 225 525 211 HOH HOH . 
K 6 HOH A 226 526 119 HOH HOH . 
K 6 HOH A 227 527 273 HOH HOH . 
K 6 HOH A 228 528 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 40.664 -9.528 25.368 1 26.97 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . D 4 41.785 -9.527 26.251 1 21.82 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . D 4 41 -9.181 23.974 1 29.63 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . D 4 41.465 -7.851 23.841 1 39.47 ? O2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#