data_7S44 # _model_server_result.job_id vvXJ-xVr9snQ2cSEWmygyA _model_server_result.datetime_utc '2024-11-29 00:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 7S44 # _exptl.entry_id 7S44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S44 _cell.length_a 103.731 _cell.length_b 103.731 _cell.length_c 103.731 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 130 A ASN 108 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A OD1 ASN 130 A ASN 108 1_555 G NA NA . A NA 206 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc3 G NA NA . A NA 206 1_555 H O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 G NA NA . A NA 206 1_555 H O HOH . A HOH 310 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 170 n n C1 C2 EDO sing 171 n n C1 H11 EDO sing 172 n n C1 H12 EDO sing 173 n n O1 HO1 EDO sing 174 n n C2 O2 EDO sing 175 n n C2 H21 EDO sing 176 n n C2 H22 EDO sing 177 n n O2 HO2 EDO sing 178 n n # _atom_sites.entry_id 7S44 _atom_sites.fract_transf_matrix[1][1] 0.00964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T3F A 1 201 200 T3F T3F . C 3 CAO A 1 202 201 CAO CAO . D 4 EDO A 1 203 1 EDO EDO . E 4 EDO A 1 204 2 EDO EDO . F 4 EDO A 1 205 3 EDO EDO . G 5 NA A 1 206 1 NA NA . H 6 HOH A 1 301 266 HOH HOH . H 6 HOH A 2 302 257 HOH HOH . H 6 HOH A 3 303 254 HOH HOH . H 6 HOH A 4 304 243 HOH HOH . H 6 HOH A 5 305 227 HOH HOH . H 6 HOH A 6 306 226 HOH HOH . H 6 HOH A 7 307 162 HOH HOH . H 6 HOH A 8 308 208 HOH HOH . H 6 HOH A 9 309 28 HOH HOH . H 6 HOH A 10 310 197 HOH HOH . H 6 HOH A 11 311 96 HOH HOH . H 6 HOH A 12 312 27 HOH HOH . H 6 HOH A 13 313 262 HOH HOH . H 6 HOH A 14 314 61 HOH HOH . H 6 HOH A 15 315 19 HOH HOH . H 6 HOH A 16 316 93 HOH HOH . H 6 HOH A 17 317 265 HOH HOH . H 6 HOH A 18 318 72 HOH HOH . H 6 HOH A 19 319 188 HOH HOH . H 6 HOH A 20 320 256 HOH HOH . H 6 HOH A 21 321 107 HOH HOH . H 6 HOH A 22 322 34 HOH HOH . H 6 HOH A 23 323 63 HOH HOH . H 6 HOH A 24 324 50 HOH HOH . H 6 HOH A 25 325 73 HOH HOH . H 6 HOH A 26 326 202 HOH HOH . H 6 HOH A 27 327 11 HOH HOH . H 6 HOH A 28 328 102 HOH HOH . H 6 HOH A 29 329 169 HOH HOH . H 6 HOH A 30 330 216 HOH HOH . H 6 HOH A 31 331 37 HOH HOH . H 6 HOH A 32 332 215 HOH HOH . H 6 HOH A 33 333 111 HOH HOH . H 6 HOH A 34 334 203 HOH HOH . H 6 HOH A 35 335 52 HOH HOH . H 6 HOH A 36 336 20 HOH HOH . H 6 HOH A 37 337 3 HOH HOH . H 6 HOH A 38 338 199 HOH HOH . H 6 HOH A 39 339 163 HOH HOH . H 6 HOH A 40 340 158 HOH HOH . H 6 HOH A 41 341 55 HOH HOH . H 6 HOH A 42 342 57 HOH HOH . H 6 HOH A 43 343 59 HOH HOH . H 6 HOH A 44 344 99 HOH HOH . H 6 HOH A 45 345 47 HOH HOH . H 6 HOH A 46 346 230 HOH HOH . H 6 HOH A 47 347 258 HOH HOH . H 6 HOH A 48 348 25 HOH HOH . H 6 HOH A 49 349 115 HOH HOH . H 6 HOH A 50 350 97 HOH HOH . H 6 HOH A 51 351 232 HOH HOH . H 6 HOH A 52 352 56 HOH HOH . H 6 HOH A 53 353 12 HOH HOH . H 6 HOH A 54 354 17 HOH HOH . H 6 HOH A 55 355 149 HOH HOH . H 6 HOH A 56 356 146 HOH HOH . H 6 HOH A 57 357 42 HOH HOH . H 6 HOH A 58 358 48 HOH HOH . H 6 HOH A 59 359 15 HOH HOH . H 6 HOH A 60 360 234 HOH HOH . H 6 HOH A 61 361 43 HOH HOH . H 6 HOH A 62 362 8 HOH HOH . H 6 HOH A 63 363 53 HOH HOH . H 6 HOH A 64 364 87 HOH HOH . H 6 HOH A 65 365 13 HOH HOH . H 6 HOH A 66 366 159 HOH HOH . H 6 HOH A 67 367 60 HOH HOH . H 6 HOH A 68 368 74 HOH HOH . H 6 HOH A 69 369 228 HOH HOH . H 6 HOH A 70 370 44 HOH HOH . H 6 HOH A 71 371 148 HOH HOH . H 6 HOH A 72 372 124 HOH HOH . H 6 HOH A 73 373 109 HOH HOH . H 6 HOH A 74 374 168 HOH HOH . H 6 HOH A 75 375 152 HOH HOH . H 6 HOH A 76 376 171 HOH HOH . H 6 HOH A 77 377 18 HOH HOH . H 6 HOH A 78 378 155 HOH HOH . H 6 HOH A 79 379 147 HOH HOH . H 6 HOH A 80 380 156 HOH HOH . H 6 HOH A 81 381 31 HOH HOH . H 6 HOH A 82 382 94 HOH HOH . H 6 HOH A 83 383 104 HOH HOH . H 6 HOH A 84 384 180 HOH HOH . H 6 HOH A 85 385 62 HOH HOH . H 6 HOH A 86 386 244 HOH HOH . H 6 HOH A 87 387 33 HOH HOH . H 6 HOH A 88 388 24 HOH HOH . H 6 HOH A 89 389 223 HOH HOH . H 6 HOH A 90 390 1 HOH HOH . H 6 HOH A 91 391 41 HOH HOH . H 6 HOH A 92 392 7 HOH HOH . H 6 HOH A 93 393 178 HOH HOH . H 6 HOH A 94 394 81 HOH HOH . H 6 HOH A 95 395 91 HOH HOH . H 6 HOH A 96 396 5 HOH HOH . H 6 HOH A 97 397 69 HOH HOH . H 6 HOH A 98 398 164 HOH HOH . H 6 HOH A 99 399 49 HOH HOH . H 6 HOH A 100 400 179 HOH HOH . H 6 HOH A 101 401 30 HOH HOH . H 6 HOH A 102 402 51 HOH HOH . H 6 HOH A 103 403 110 HOH HOH . H 6 HOH A 104 404 205 HOH HOH . H 6 HOH A 105 405 127 HOH HOH . H 6 HOH A 106 406 247 HOH HOH . H 6 HOH A 107 407 45 HOH HOH . H 6 HOH A 108 408 79 HOH HOH . H 6 HOH A 109 409 46 HOH HOH . H 6 HOH A 110 410 68 HOH HOH . H 6 HOH A 111 411 39 HOH HOH . H 6 HOH A 112 412 6 HOH HOH . H 6 HOH A 113 413 233 HOH HOH . H 6 HOH A 114 414 106 HOH HOH . H 6 HOH A 115 415 14 HOH HOH . H 6 HOH A 116 416 131 HOH HOH . H 6 HOH A 117 417 2 HOH HOH . H 6 HOH A 118 418 229 HOH HOH . H 6 HOH A 119 419 23 HOH HOH . H 6 HOH A 120 420 214 HOH HOH . H 6 HOH A 121 421 36 HOH HOH . H 6 HOH A 122 422 103 HOH HOH . H 6 HOH A 123 423 204 HOH HOH . H 6 HOH A 124 424 58 HOH HOH . H 6 HOH A 125 425 90 HOH HOH . H 6 HOH A 126 426 172 HOH HOH . H 6 HOH A 127 427 170 HOH HOH . H 6 HOH A 128 428 246 HOH HOH . H 6 HOH A 129 429 64 HOH HOH . H 6 HOH A 130 430 54 HOH HOH . H 6 HOH A 131 431 108 HOH HOH . H 6 HOH A 132 432 235 HOH HOH . H 6 HOH A 133 433 32 HOH HOH . H 6 HOH A 134 434 16 HOH HOH . H 6 HOH A 135 435 268 HOH HOH . H 6 HOH A 136 436 212 HOH HOH . H 6 HOH A 137 437 10 HOH HOH . H 6 HOH A 138 438 167 HOH HOH . H 6 HOH A 139 439 219 HOH HOH . H 6 HOH A 140 440 4 HOH HOH . H 6 HOH A 141 441 224 HOH HOH . H 6 HOH A 142 442 129 HOH HOH . H 6 HOH A 143 443 38 HOH HOH . H 6 HOH A 144 444 207 HOH HOH . H 6 HOH A 145 445 249 HOH HOH . H 6 HOH A 146 446 181 HOH HOH . H 6 HOH A 147 447 211 HOH HOH . H 6 HOH A 148 448 259 HOH HOH . H 6 HOH A 149 449 21 HOH HOH . H 6 HOH A 150 450 240 HOH HOH . H 6 HOH A 151 451 139 HOH HOH . H 6 HOH A 152 452 77 HOH HOH . H 6 HOH A 153 453 67 HOH HOH . H 6 HOH A 154 454 269 HOH HOH . H 6 HOH A 155 455 245 HOH HOH . H 6 HOH A 156 456 123 HOH HOH . H 6 HOH A 157 457 206 HOH HOH . H 6 HOH A 158 458 231 HOH HOH . H 6 HOH A 159 459 85 HOH HOH . H 6 HOH A 160 460 264 HOH HOH . H 6 HOH A 161 461 217 HOH HOH . H 6 HOH A 162 462 209 HOH HOH . H 6 HOH A 163 463 153 HOH HOH . H 6 HOH A 164 464 263 HOH HOH . H 6 HOH A 165 465 242 HOH HOH . H 6 HOH A 166 466 135 HOH HOH . H 6 HOH A 167 467 98 HOH HOH . H 6 HOH A 168 468 136 HOH HOH . H 6 HOH A 169 469 267 HOH HOH . H 6 HOH A 170 470 210 HOH HOH . H 6 HOH A 171 471 101 HOH HOH . H 6 HOH A 172 472 201 HOH HOH . H 6 HOH A 173 473 261 HOH HOH . H 6 HOH A 174 474 65 HOH HOH . H 6 HOH A 175 475 241 HOH HOH . H 6 HOH A 176 476 222 HOH HOH . H 6 HOH A 177 477 22 HOH HOH . H 6 HOH A 178 478 237 HOH HOH . H 6 HOH A 179 479 151 HOH HOH . H 6 HOH A 180 480 174 HOH HOH . H 6 HOH A 181 481 182 HOH HOH . H 6 HOH A 182 482 255 HOH HOH . H 6 HOH A 183 483 238 HOH HOH . H 6 HOH A 184 484 117 HOH HOH . H 6 HOH A 185 485 200 HOH HOH . H 6 HOH A 186 486 187 HOH HOH . H 6 HOH A 187 487 89 HOH HOH . H 6 HOH A 188 488 157 HOH HOH . H 6 HOH A 189 489 253 HOH HOH . H 6 HOH A 190 490 76 HOH HOH . H 6 HOH A 191 491 150 HOH HOH . H 6 HOH A 192 492 220 HOH HOH . H 6 HOH A 193 493 213 HOH HOH . H 6 HOH A 194 494 165 HOH HOH . H 6 HOH A 195 495 221 HOH HOH . H 6 HOH A 196 496 82 HOH HOH . H 6 HOH A 197 497 260 HOH HOH . H 6 HOH A 198 498 173 HOH HOH . H 6 HOH A 199 499 144 HOH HOH . H 6 HOH A 200 500 251 HOH HOH . H 6 HOH A 201 501 196 HOH HOH . H 6 HOH A 202 502 141 HOH HOH . H 6 HOH A 203 503 252 HOH HOH . H 6 HOH A 204 504 192 HOH HOH . H 6 HOH A 205 505 225 HOH HOH . H 6 HOH A 206 506 29 HOH HOH . H 6 HOH A 207 507 40 HOH HOH . H 6 HOH A 208 508 239 HOH HOH . H 6 HOH A 209 509 128 HOH HOH . H 6 HOH A 210 510 218 HOH HOH . H 6 HOH A 211 511 80 HOH HOH . H 6 HOH A 212 512 250 HOH HOH . H 6 HOH A 213 513 193 HOH HOH . H 6 HOH A 214 514 195 HOH HOH . H 6 HOH A 215 515 66 HOH HOH . H 6 HOH A 216 516 236 HOH HOH . H 6 HOH A 217 517 248 HOH HOH . H 6 HOH A 218 518 119 HOH HOH . H 6 HOH A 219 519 70 HOH HOH . H 6 HOH A 220 520 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 5.237 -15.967 -22.583 1 21.71 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 4 5.258 -17.094 -21.723 1 18.81 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 4 4.3 -14.908 -22.139 1 30.16 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 4 4.62 -14.434 -20.84 1 39.1 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #