data_7S4E
#
_model_server_result.job_id            AVMH3Tw4Qg5TR5dgsK1gfQ 
_model_server_result.datetime_utc      '2024-11-14 06:49:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7s4e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":201}' 
#
_entry.id    7S4E 
#
_exptl.entry_id    7S4E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7S4E 
_cell.length_a            80.14 
_cell.length_b            116.57 
_cell.length_c            122.32 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7S4E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,BA,CA,DA,EA 1 1 
E,F,G,H,W,X,Y,Z,AA,FA,GA,HA,IA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 M N N 
? 5 O N N 
? 5 U N N 
? 5 V N N 
? 5 X N N 
? 5 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 53 A TYR 1421 1_555 L NA NA . A NA 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc2 A O VAL 61 A VAL 1429 1_555 L NA NA . A NA 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc3 B OD1 ASN 16 B ASN 67 1_555 Q NA NA . B NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? 
metalc ? metalc4 B O SER 60 B SER 111 1_555 R NA NA . B NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc5 B O PRO 103 B PRO 154 1_555 S NA NA . B NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc6 Q NA NA . B NA 305 1_555 T O4 87A . B 87A 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? 
metalc ? metalc7 R NA NA . B NA 306 1_555 CA O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? 
metalc ? metalc8 S NA NA . B NA 307 1_555 C OH TYR 63 C TYR 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc9 S NA NA . B NA 307 1_555 DA O HOH . C HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc10 F O PRO 103 F PRO 154 1_555 Y NA NA . F NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? 
metalc ? metalc11 Y NA NA . F NA 303 1_555 G OH TYR 63 G TYR 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc12 Y NA NA . F NA 303 1_555 HA O HOH . G HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 215 n n 
C1 C2 EDO sing 216 n n 
C1 H11 EDO sing 217 n n 
C1 H12 EDO sing 218 n n 
O1 HO1 EDO sing 219 n n 
C2 O2 EDO sing 220 n n 
C2 H21 EDO sing 221 n n 
C2 H22 EDO sing 222 n n 
O2 HO2 EDO sing 223 n n 
#
_atom_sites.entry_id                     7S4E 
_atom_sites.fract_transf_matrix[1][1]    0.012478 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008175 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 EDO A 1 1501 1502 EDO EDO . 
J 5 EDO A 1 1502 1503 EDO EDO . 
K 5 EDO A 1 1503 306 EDO EDO . 
L 6 NA A 1 1504 6 NA NA . 
M 5 EDO B 1 301 303 EDO EDO . 
N 7 PEG B 1 302 304 PEG PEG . 
O 5 EDO B 1 303 307 EDO EDO . 
P 7 PEG B 1 304 308 PEG PEG . 
Q 6 NA B 1 305 4 NA NA . 
R 6 NA B 1 306 5 NA NA . 
S 6 NA B 1 307 8 NA NA . 
T 8 87A B 1 308 301 87A 406 . 
U 5 EDO D 1 201 201 EDO EDO . 
V 5 EDO D 1 202 202 EDO EDO . 
W 7 PEG F 1 301 303 PEG PEG . 
X 5 EDO F 1 302 304 EDO EDO . 
Y 6 NA F 1 303 2 NA NA . 
Z 8 87A F 1 304 302 87A 406 . 
AA 5 EDO G 1 201 202 EDO EDO . 
BA 9 HOH A 1 1601 175 HOH HOH . 
BA 9 HOH A 2 1602 238 HOH HOH . 
BA 9 HOH A 3 1603 119 HOH HOH . 
BA 9 HOH A 4 1604 121 HOH HOH . 
BA 9 HOH A 5 1605 62 HOH HOH . 
BA 9 HOH A 6 1606 184 HOH HOH . 
CA 9 HOH B 1 401 146 HOH HOH . 
CA 9 HOH B 2 402 31 HOH HOH . 
CA 9 HOH B 3 403 136 HOH HOH . 
CA 9 HOH B 4 404 174 HOH HOH . 
CA 9 HOH B 5 405 51 HOH HOH . 
CA 9 HOH B 6 406 231 HOH HOH . 
CA 9 HOH B 7 407 1 HOH HOH . 
CA 9 HOH B 8 408 30 HOH HOH . 
CA 9 HOH B 9 409 180 HOH HOH . 
CA 9 HOH B 10 410 116 HOH HOH . 
CA 9 HOH B 11 411 67 HOH HOH . 
CA 9 HOH B 12 412 126 HOH HOH . 
CA 9 HOH B 13 413 128 HOH HOH . 
CA 9 HOH B 14 414 224 HOH HOH . 
CA 9 HOH B 15 415 149 HOH HOH . 
CA 9 HOH B 16 416 232 HOH HOH . 
CA 9 HOH B 17 417 156 HOH HOH . 
DA 9 HOH C 1 201 170 HOH HOH . 
DA 9 HOH C 2 202 241 HOH HOH . 
DA 9 HOH C 3 203 10 HOH HOH . 
DA 9 HOH C 4 204 35 HOH HOH . 
DA 9 HOH C 5 205 129 HOH HOH . 
DA 9 HOH C 6 206 202 HOH HOH . 
DA 9 HOH C 7 207 228 HOH HOH . 
DA 9 HOH C 8 208 160 HOH HOH . 
DA 9 HOH C 9 209 201 HOH HOH . 
EA 9 HOH D 1 301 57 HOH HOH . 
EA 9 HOH D 2 302 226 HOH HOH . 
EA 9 HOH D 3 303 49 HOH HOH . 
EA 9 HOH D 4 304 171 HOH HOH . 
EA 9 HOH D 5 305 75 HOH HOH . 
EA 9 HOH D 6 306 229 HOH HOH . 
EA 9 HOH D 7 307 20 HOH HOH . 
EA 9 HOH D 8 308 112 HOH HOH . 
EA 9 HOH D 9 309 44 HOH HOH . 
EA 9 HOH D 10 310 36 HOH HOH . 
EA 9 HOH D 11 311 23 HOH HOH . 
EA 9 HOH D 12 312 101 HOH HOH . 
EA 9 HOH D 13 313 132 HOH HOH . 
EA 9 HOH D 14 314 19 HOH HOH . 
EA 9 HOH D 15 315 182 HOH HOH . 
EA 9 HOH D 16 316 39 HOH HOH . 
EA 9 HOH D 17 317 54 HOH HOH . 
EA 9 HOH D 18 318 118 HOH HOH . 
EA 9 HOH D 19 319 225 HOH HOH . 
EA 9 HOH D 20 320 6 HOH HOH . 
EA 9 HOH D 21 321 137 HOH HOH . 
EA 9 HOH D 22 322 125 HOH HOH . 
EA 9 HOH D 23 323 227 HOH HOH . 
EA 9 HOH D 24 324 158 HOH HOH . 
EA 9 HOH D 25 325 71 HOH HOH . 
FA 9 HOH E 1 1501 141 HOH HOH . 
FA 9 HOH E 2 1502 193 HOH HOH . 
FA 9 HOH E 3 1503 209 HOH HOH . 
FA 9 HOH E 4 1504 153 HOH HOH . 
GA 9 HOH F 1 401 190 HOH HOH . 
GA 9 HOH F 2 402 183 HOH HOH . 
GA 9 HOH F 3 403 5 HOH HOH . 
GA 9 HOH F 4 404 24 HOH HOH . 
GA 9 HOH F 5 405 206 HOH HOH . 
GA 9 HOH F 6 406 181 HOH HOH . 
GA 9 HOH F 7 407 205 HOH HOH . 
GA 9 HOH F 8 408 131 HOH HOH . 
GA 9 HOH F 9 409 130 HOH HOH . 
GA 9 HOH F 10 410 53 HOH HOH . 
GA 9 HOH F 11 411 236 HOH HOH . 
HA 9 HOH G 1 301 74 HOH HOH . 
HA 9 HOH G 2 302 127 HOH HOH . 
HA 9 HOH G 3 303 117 HOH HOH . 
HA 9 HOH G 4 304 47 HOH HOH . 
HA 9 HOH G 5 305 11 HOH HOH . 
HA 9 HOH G 6 306 139 HOH HOH . 
HA 9 HOH G 7 307 239 HOH HOH . 
HA 9 HOH G 8 308 194 HOH HOH . 
HA 9 HOH G 9 309 70 HOH HOH . 
HA 9 HOH G 10 310 178 HOH HOH . 
HA 9 HOH G 11 311 240 HOH HOH . 
IA 9 HOH H 1 201 25 HOH HOH . 
IA 9 HOH H 2 202 46 HOH HOH . 
IA 9 HOH H 3 203 80 HOH HOH . 
IA 9 HOH H 4 204 42 HOH HOH . 
IA 9 HOH H 5 205 115 HOH HOH . 
IA 9 HOH H 6 206 169 HOH HOH . 
IA 9 HOH H 7 207 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . AA 5 52.368 24.813 -2.596 1 91.68 ? C1 EDO 201 G 1 
HETATM 2 O O1 EDO . . . AA 5 53.329 23.778 -2.844 1 87.23 ? O1 EDO 201 G 1 
HETATM 3 C C2 EDO . . . AA 5 50.969 24.544 -3.056 1 88.22 ? C2 EDO 201 G 1 
HETATM 4 O O2 EDO . . . AA 5 50.089 24.037 -2.051 1 84.51 ? O2 EDO 201 G 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#