data_7S4L # _model_server_result.job_id 3UAX-i_55oKi1n8vb-wBGg _model_server_result.datetime_utc '2024-10-15 11:29:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":304}' # _entry.id 7S4L # _exptl.entry_id 7S4L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S4L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 P N N ? 6 V N N ? 6 W N N ? 6 EA N N ? 6 IA N N ? 6 JA N N ? 6 NA N N ? 6 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 33 A HIS 33 1_555 J CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc2 A ND1 HIS 72 A HIS 72 1_555 K CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc3 A NE2 HIS 139 A HIS 139 1_555 J CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc4 C OD2 ASP 128 C ASP 128 1_555 R CU CU . C CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc5 C NE2 HIS 132 C HIS 132 1_555 R CU CU . C CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 C NE2 HIS 145 C HIS 145 1_555 R CU CU . C CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 D OD2 ASP 128 H ASP 128 1_555 X CU CU . H CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc8 D NE2 HIS 132 H HIS 132 1_555 X CU CU . H CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc9 D ND1 HIS 145 H HIS 145 1_555 X CU CU . H CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc10 E OD2 ASP 128 I ASP 128 1_555 AA CU CU . I CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc11 E NE2 HIS 132 I HIS 132 1_555 AA CU CU . I CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc12 E ND1 HIS 145 I HIS 145 1_555 AA CU CU . I CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc13 H ND1 HIS 33 D HIS 33 1_555 PA CU CU . D CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc14 H ND1 HIS 72 D HIS 72 1_555 QA CU CU . D CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc15 H NE2 HIS 139 D HIS 139 1_555 PA CU CU . D CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc16 I ND1 HIS 33 E HIS 33 1_555 RA CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc17 I ND1 HIS 72 E HIS 72 1_555 SA CU CU . E CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc18 I NE2 HIS 139 E HIS 139 1_555 RA CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 153 n n C1 H11 D10 sing 154 n n C1 H12 D10 sing 155 n n C1 H13 D10 sing 156 n n C2 C3 D10 sing 157 n n C2 H21 D10 sing 158 n n C2 H22 D10 sing 159 n n C3 C4 D10 sing 160 n n C3 H31 D10 sing 161 n n C3 H32 D10 sing 162 n n C4 C5 D10 sing 163 n n C4 H41 D10 sing 164 n n C4 H42 D10 sing 165 n n C5 C6 D10 sing 166 n n C5 H51 D10 sing 167 n n C5 H52 D10 sing 168 n n C6 C7 D10 sing 169 n n C6 H61 D10 sing 170 n n C6 H62 D10 sing 171 n n C7 C8 D10 sing 172 n n C7 H71 D10 sing 173 n n C7 H72 D10 sing 174 n n C8 C9 D10 sing 175 n n C8 H81 D10 sing 176 n n C8 H82 D10 sing 177 n n C9 C10 D10 sing 178 n n C9 H91 D10 sing 179 n n C9 H92 D10 sing 180 n n C10 H101 D10 sing 181 n n C10 H102 D10 sing 182 n n C10 H103 D10 sing 183 n n # _atom_sites.entry_id 7S4L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 CU A 1 501 501 CU CU . K 4 CU A 1 502 601 CU CU . L 5 HXG B 1 301 301 HXG HXG . M 5 HXG B 1 302 401 HXG HXG . N 5 HXG B 1 303 402 HXG HXG . O 6 D10 B 1 304 403 D10 D10 . P 6 D10 B 1 305 404 D10 D10 . Q 7 6ER B 1 306 405 6ER HXG . R 4 CU C 1 301 301 CU CU . S 5 HXG C 1 302 501 HXG HXG . T 5 HXG C 1 303 502 HXG HXG . U 7 6ER C 1 304 405 6ER HXG . V 6 D10 C 1 305 406 D10 D10 . W 6 D10 H 1 301 406 D10 D10 . X 4 CU H 1 302 301 CU CU . Y 5 HXG H 1 303 501 HXG HXG . Z 5 HXG H 1 304 502 HXG HXG . AA 4 CU I 1 301 301 CU CU . BA 5 HXG I 1 302 501 HXG HXG . CA 5 HXG I 1 303 502 HXG HXG . DA 7 6ER I 1 304 405 6ER HXG . EA 6 D10 I 1 305 406 D10 D10 . FA 5 HXG F 1 301 301 HXG HXG . GA 5 HXG F 1 302 401 HXG HXG . HA 5 HXG F 1 303 402 HXG HXG . IA 6 D10 F 1 304 403 D10 D10 . JA 6 D10 F 1 305 404 D10 D10 . KA 5 HXG G 1 301 301 HXG HXG . LA 5 HXG G 1 302 401 HXG HXG . MA 5 HXG G 1 303 402 HXG HXG . NA 6 D10 G 1 304 403 D10 D10 . OA 6 D10 G 1 305 404 D10 D10 . PA 4 CU D 1 501 501 CU CU . QA 4 CU D 1 502 601 CU CU . RA 4 CU E 1 501 501 CU CU . SA 4 CU E 1 502 601 CU CU . TA 8 HOH A 1 601 500 HOH HOH . UA 8 HOH D 1 601 500 HOH HOH . VA 8 HOH E 1 601 500 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . NA 6 102.876 92.25 117.174 1 20 ? C1 D10 304 G 1 HETATM 2 C C2 D10 . . . NA 6 102.802 93.644 117.754 1 20 ? C2 D10 304 G 1 HETATM 3 C C3 D10 . . . NA 6 101.667 93.879 118.723 1 20 ? C3 D10 304 G 1 HETATM 4 C C4 D10 . . . NA 6 101.661 93.001 119.953 1 20 ? C4 D10 304 G 1 HETATM 5 C C5 D10 . . . NA 6 100.934 93.598 121.135 1 20 ? C5 D10 304 G 1 HETATM 6 C C6 D10 . . . NA 6 100.575 92.604 122.216 1 20 ? C6 D10 304 G 1 HETATM 7 C C7 D10 . . . NA 6 100.458 93.195 123.605 1 20 ? C7 D10 304 G 1 HETATM 8 C C8 D10 . . . NA 6 101.764 93.28 124.358 1 20 ? C8 D10 304 G 1 HETATM 9 C C9 D10 . . . NA 6 102.154 92.012 125.073 1 20 ? C9 D10 304 G 1 HETATM 10 C C10 D10 . . . NA 6 101.973 92.064 126.57 1 20 ? C10 D10 304 G 1 HETATM 11 H H11 D10 . . . NA 6 103.342 91.663 117.795 1 20 ? H11 D10 304 G 1 HETATM 12 H H12 D10 . . . NA 6 103.358 92.274 116.33 1 20 ? H12 D10 304 G 1 HETATM 13 H H13 D10 . . . NA 6 101.977 91.91 117.022 1 20 ? H13 D10 304 G 1 HETATM 14 H H21 D10 . . . NA 6 102.716 94.284 117.016 1 20 ? H21 D10 304 G 1 HETATM 15 H H22 D10 . . . NA 6 103.648 93.837 118.213 1 20 ? H22 D10 304 G 1 HETATM 16 H H31 D10 . . . NA 6 100.82 93.75 118.246 1 20 ? H31 D10 304 G 1 HETATM 17 H H32 D10 . . . NA 6 101.7 94.816 119.011 1 20 ? H32 D10 304 G 1 HETATM 18 H H41 D10 . . . NA 6 102.588 92.818 120.215 1 20 ? H41 D10 304 G 1 HETATM 19 H H42 D10 . . . NA 6 101.242 92.145 119.724 1 20 ? H42 D10 304 G 1 HETATM 20 H H51 D10 . . . NA 6 100.11 94.022 120.815 1 20 ? H51 D10 304 G 1 HETATM 21 H H52 D10 . . . NA 6 101.497 94.3 121.524 1 20 ? H52 D10 304 G 1 HETATM 22 H H61 D10 . . . NA 6 101.255 91.897 122.231 1 20 ? H61 D10 304 G 1 HETATM 23 H H62 D10 . . . NA 6 99.72 92.185 121.982 1 20 ? H62 D10 304 G 1 HETATM 24 H H71 D10 . . . NA 6 99.828 92.652 124.13 1 20 ? H71 D10 304 G 1 HETATM 25 H H72 D10 . . . NA 6 100.08 94.097 123.532 1 20 ? H72 D10 304 G 1 HETATM 26 H H81 D10 . . . NA 6 101.699 94.006 125.014 1 20 ? H81 D10 304 G 1 HETATM 27 H H82 D10 . . . NA 6 102.478 93.515 123.728 1 20 ? H82 D10 304 G 1 HETATM 28 H H91 D10 . . . NA 6 103.096 91.818 124.874 1 20 ? H91 D10 304 G 1 HETATM 29 H H92 D10 . . . NA 6 101.617 91.272 124.717 1 20 ? H92 D10 304 G 1 HETATM 30 H H101 D10 . . . NA 6 102.136 91.183 126.948 1 20 ? H101 D10 304 G 1 HETATM 31 H H102 D10 . . . NA 6 101.064 92.341 126.779 1 20 ? H102 D10 304 G 1 HETATM 32 H H103 D10 . . . NA 6 102.601 92.701 126.953 1 20 ? H103 D10 304 G 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 31 _model_server_stats.element_count 32 #