data_7S50 # _model_server_result.job_id n5oKz1wrP61m8Uf54GFIHg _model_server_result.datetime_utc '2025-04-04 01:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7S50 # _exptl.entry_id 7S50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7S50 _cell.length_a 188.5 _cell.length_b 188.5 _cell.length_c 61 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_554 y,x,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -61 5 'crystal symmetry operation' 5_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -61 6 'crystal symmetry operation' 6_554 -x,-x+y,-z-1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -61 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O LEU 2 B LEU 2 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc2 B O ASP 101 B ASP 101 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc3 B OG SER 103 B SER 103 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 7S50 _atom_sites.fract_transf_matrix[1][1] 0.005305 _atom_sites.fract_transf_matrix[1][2] 0.003063 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 201 201 CYC CYC . D 3 CYC B 1 201 201 CYC CYC . E 3 CYC B 1 202 202 CYC CYC . F 4 NA B 1 203 2 NA NA . G 5 CL B 1 204 1 CL CL . H 6 HOH A 1 301 22 HOH HOH . H 6 HOH A 2 302 17 HOH HOH . H 6 HOH A 3 303 4 HOH HOH . H 6 HOH A 4 304 31 HOH HOH . H 6 HOH A 5 305 40 HOH HOH . H 6 HOH A 6 306 6 HOH HOH . H 6 HOH A 7 307 30 HOH HOH . H 6 HOH A 8 308 36 HOH HOH . H 6 HOH A 9 309 15 HOH HOH . H 6 HOH A 10 310 25 HOH HOH . H 6 HOH A 11 311 2 HOH HOH . H 6 HOH A 12 312 28 HOH HOH . H 6 HOH A 13 313 5 HOH HOH . H 6 HOH A 14 314 18 HOH HOH . H 6 HOH A 15 315 11 HOH HOH . H 6 HOH A 16 316 20 HOH HOH . H 6 HOH A 17 317 10 HOH HOH . I 6 HOH B 1 301 32 HOH HOH . I 6 HOH B 2 302 39 HOH HOH . I 6 HOH B 3 303 29 HOH HOH . I 6 HOH B 4 304 37 HOH HOH . I 6 HOH B 5 305 14 HOH HOH . I 6 HOH B 6 306 13 HOH HOH . I 6 HOH B 7 307 35 HOH HOH . I 6 HOH B 8 308 16 HOH HOH . I 6 HOH B 9 309 7 HOH HOH . I 6 HOH B 10 310 8 HOH HOH . I 6 HOH B 11 311 33 HOH HOH . I 6 HOH B 12 312 21 HOH HOH . I 6 HOH B 13 313 12 HOH HOH . I 6 HOH B 14 314 1 HOH HOH . I 6 HOH B 15 315 23 HOH HOH . I 6 HOH B 16 316 19 HOH HOH . I 6 HOH B 17 317 26 HOH HOH . I 6 HOH B 18 318 9 HOH HOH . I 6 HOH B 19 319 27 HOH HOH . I 6 HOH B 20 320 34 HOH HOH . I 6 HOH B 21 321 24 HOH HOH . I 6 HOH B 22 322 3 HOH HOH . I 6 HOH B 23 323 38 HOH HOH . I 6 HOH B 24 324 41 HOH HOH . I 6 HOH B 25 325 42 HOH HOH . I 6 HOH B 26 326 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . C 3 -39.425 -2.614 -43.603 1 48.82 ? CHA CYC 201 A 1 HETATM 2 N NA CYC . . . C 3 -38.116 -4.639 -43.161 1 48.28 ? NA CYC 201 A 1 HETATM 3 C C1A CYC . . . C 3 -38.234 -3.338 -43.569 1 48.51 ? C1A CYC 201 A 1 HETATM 4 C C2A CYC . . . C 3 -36.941 -2.813 -43.98 1 48.19 ? C2A CYC 201 A 1 HETATM 5 C C3A CYC . . . C 3 -36.029 -3.772 -43.665 1 47.95 ? C3A CYC 201 A 1 HETATM 6 C C4A CYC . . . C 3 -36.774 -4.905 -43.127 1 47.7 ? C4A CYC 201 A 1 HETATM 7 C CMA CYC . . . C 3 -34.541 -3.671 -43.845 1 47.81 ? CMA CYC 201 A 1 HETATM 8 C CAA CYC . . . C 3 -36.701 -1.474 -44.615 1 48.09 ? CAA CYC 201 A 1 HETATM 9 C CBA CYC . . . C 3 -36.632 -1.515 -46.146 1 48.16 ? CBA CYC 201 A 1 HETATM 10 C CGA CYC . . . C 3 -37.757 -2.293 -46.805 1 48.26 ? CGA CYC 201 A 1 HETATM 11 O O1A CYC . . . C 3 -37.564 -3.496 -47.07 1 48.18 ? O1A CYC 201 A 1 HETATM 12 O O2A CYC . . . C 3 -38.823 -1.693 -47.059 1 48.55 ? O2A CYC 201 A 1 HETATM 13 C CHB CYC . . . C 3 -36.227 -6.071 -42.646 1 46.93 ? CHB CYC 201 A 1 HETATM 14 N NB CYC . . . C 3 -34.68 -6.644 -44.471 1 46.62 ? NB CYC 201 A 1 HETATM 15 C C1B CYC . . . C 3 -35.284 -6.855 -43.234 1 46.64 ? C1B CYC 201 A 1 HETATM 16 C C2B CYC . . . C 3 -34.75 -8.048 -42.679 1 46.26 ? C2B CYC 201 A 1 HETATM 17 C C3B CYC . . . C 3 -33.641 -8.383 -43.39 1 46.12 ? C3B CYC 201 A 1 HETATM 18 C C4B CYC . . . C 3 -33.521 -7.391 -44.508 1 46.6 ? C4B CYC 201 A 1 HETATM 19 C CMB CYC . . . C 3 -35.262 -8.832 -41.506 1 46.21 ? CMB CYC 201 A 1 HETATM 20 C CAB CYC . . . C 3 -32.67 -9.503 -43.192 1 45.84 ? CAB CYC 201 A 1 HETATM 21 C CBB CYC . . . C 3 -32.593 -10.416 -44.408 1 45.51 ? CBB CYC 201 A 1 HETATM 22 O OB CYC . . . C 3 -32.618 -7.255 -45.297 1 46.49 ? OB CYC 201 A 1 HETATM 23 N NC CYC . . . C 3 -44.66 -3.711 -40.014 1 49.23 ? NC CYC 201 A 1 HETATM 24 C C1C CYC . . . C 3 -45.812 -4.076 -39.37 1 49.2 ? C1C CYC 201 A 1 HETATM 25 C C2C CYC . . . C 3 -45.623 -5.457 -38.787 1 49.45 ? C2C CYC 201 A 1 HETATM 26 C C3C CYC . . . C 3 -44.119 -5.702 -38.989 1 48.89 ? C3C CYC 201 A 1 HETATM 27 C C4C CYC . . . C 3 -43.839 -4.816 -40.173 1 49.08 ? C4C CYC 201 A 1 HETATM 28 C CMC CYC . . . C 3 -46.138 -5.598 -37.361 1 49.57 ? CMC CYC 201 A 1 HETATM 29 C CAC CYC . . . C 3 -43.708 -7.166 -39.161 1 48.72 ? CAC CYC 201 A 1 HETATM 30 C CBC CYC . . . C 3 -43.933 -8.007 -37.925 1 48.25 ? CBC CYC 201 A 1 HETATM 31 O OC CYC . . . C 3 -46.817 -3.398 -39.275 1 49.34 ? OC CYC 201 A 1 HETATM 32 C CHD CYC . . . C 3 -42.969 -5.046 -41.243 1 49.14 ? CHD CYC 201 A 1 HETATM 33 N ND CYC . . . C 3 -40.992 -4 -42.306 1 49.46 ? ND CYC 201 A 1 HETATM 34 C C1D CYC . . . C 3 -42.344 -4.073 -42.091 1 49.21 ? C1D CYC 201 A 1 HETATM 35 C C2D CYC . . . C 3 -42.946 -3.033 -42.874 1 49.01 ? C2D CYC 201 A 1 HETATM 36 C C3D CYC . . . C 3 -41.938 -2.364 -43.528 1 49.12 ? C3D CYC 201 A 1 HETATM 37 C C4D CYC . . . C 3 -40.697 -2.977 -43.17 1 49.04 ? C4D CYC 201 A 1 HETATM 38 C CMD CYC . . . C 3 -44.411 -2.743 -42.954 1 49.04 ? CMD CYC 201 A 1 HETATM 39 C CAD CYC . . . C 3 -42.076 -1.191 -44.459 1 49.17 ? CAD CYC 201 A 1 HETATM 40 C CBD CYC . . . C 3 -41.56 0.107 -43.846 1 49.29 ? CBD CYC 201 A 1 HETATM 41 C CGD CYC . . . C 3 -41.618 1.311 -44.772 1 49.38 ? CGD CYC 201 A 1 HETATM 42 O O1D CYC . . . C 3 -41.47 2.443 -44.27 1 48.99 ? O1D CYC 201 A 1 HETATM 43 O O2D CYC . . . C 3 -41.807 1.119 -45.992 1 49.55 ? O2D CYC 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 43 #