data_7S5H # _model_server_result.job_id cSWEfk8u7rgkDH0HEzYG2A _model_server_result.datetime_utc '2025-01-09 19:30:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7s5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 7S5H # _exptl.entry_id 7S5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-but-2-ene-1,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7S5H _cell.length_a 44.25 _cell.length_b 72.487 _cell.length_c 105.112 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 71 B CYS 223 1_555 B SG CYS 103 B CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 B SG CYS 171 B CYS 323 1_555 B SG CYS 206 B CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 B SG CYS 223 B CYS 375 1_555 B SG CYS 226 B CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 C C Z50 1 C Z50 1 1_555 C N DNP 2 C DNP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 C C1 Z50 1 C Z50 1 1_555 C NE1 FTR 5 C FTR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale3 C N Z50 1 C Z50 1 1_555 C C 3WX 9 C 3WX 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 C C DNP 2 C DNP 2 1_555 C N DAL 3 C DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 C C DAL 3 C DAL 3 1_555 C N PHE 4 C PHE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C PHE 4 C PHE 4 1_555 C N FTR 5 C FTR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 C CE2 PHE 4 C PHE 4 1_555 D C2 89N . C 89N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale8 C C FTR 5 C FTR 5 1_555 C N PRO 6 C PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 C CB PRO 6 C PRO 6 1_555 D O1 89N . C 89N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale10 C C THR 7 C THR 7 1_555 C N 0A1 8 C 0A1 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 C C 0A1 8 C 0A1 8 1_555 C N 3WX 9 C 3WX 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id 89N _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-but-2-ene-1,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C4 89N sing 48 n n C4 C5 89N doub 49 e n C5 C3 89N sing 50 n n C3 O1 89N sing 51 n n C2 O2 89N sing 52 n n C2 H1 89N sing 53 n n C2 H2 89N sing 54 n n C3 H3 89N sing 55 n n C3 H4 89N sing 56 n n C4 H5 89N sing 57 n n C5 H6 89N sing 58 n n O1 H7 89N sing 59 n n O2 H8 89N sing 60 n n # _atom_sites.entry_id 7S5H _atom_sites.fract_transf_matrix[1][1] 0.022599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 89N C 1 101 12 89N Z05 . E 5 HOH A 1 201 7 HOH HOH . E 5 HOH A 2 202 29 HOH HOH . E 5 HOH A 3 203 34 HOH HOH . E 5 HOH A 4 204 105 HOH HOH . E 5 HOH A 5 205 88 HOH HOH . E 5 HOH A 6 206 6 HOH HOH . E 5 HOH A 7 207 60 HOH HOH . E 5 HOH A 8 208 81 HOH HOH . E 5 HOH A 9 209 25 HOH HOH . E 5 HOH A 10 210 33 HOH HOH . E 5 HOH A 11 211 148 HOH HOH . E 5 HOH A 12 212 20 HOH HOH . E 5 HOH A 13 213 165 HOH HOH . E 5 HOH A 14 214 85 HOH HOH . E 5 HOH A 15 215 100 HOH HOH . E 5 HOH A 16 216 37 HOH HOH . E 5 HOH A 17 217 10 HOH HOH . E 5 HOH A 18 218 180 HOH HOH . E 5 HOH A 19 219 179 HOH HOH . E 5 HOH A 20 220 118 HOH HOH . E 5 HOH A 21 221 56 HOH HOH . E 5 HOH A 22 222 44 HOH HOH . E 5 HOH A 23 223 28 HOH HOH . E 5 HOH A 24 224 18 HOH HOH . E 5 HOH A 25 225 39 HOH HOH . E 5 HOH A 26 226 53 HOH HOH . E 5 HOH A 27 227 52 HOH HOH . E 5 HOH A 28 228 101 HOH HOH . E 5 HOH A 29 229 21 HOH HOH . E 5 HOH A 30 230 17 HOH HOH . E 5 HOH A 31 231 73 HOH HOH . E 5 HOH A 32 232 126 HOH HOH . E 5 HOH A 33 233 164 HOH HOH . E 5 HOH A 34 234 21 HOH HOH . E 5 HOH A 35 235 150 HOH HOH . E 5 HOH A 36 236 115 HOH HOH . E 5 HOH A 37 237 12 HOH HOH . E 5 HOH A 38 238 109 HOH HOH . E 5 HOH A 39 239 117 HOH HOH . E 5 HOH A 40 240 72 HOH HOH . E 5 HOH A 41 241 125 HOH HOH . E 5 HOH A 42 242 41 HOH HOH . E 5 HOH A 43 243 157 HOH HOH . E 5 HOH A 44 244 24 HOH HOH . E 5 HOH A 45 245 25 HOH HOH . E 5 HOH A 46 246 158 HOH HOH . E 5 HOH A 47 247 152 HOH HOH . E 5 HOH A 48 248 175 HOH HOH . E 5 HOH A 49 249 163 HOH HOH . E 5 HOH A 50 250 99 HOH HOH . E 5 HOH A 51 251 83 HOH HOH . E 5 HOH A 52 252 9 HOH HOH . E 5 HOH A 53 253 22 HOH HOH . E 5 HOH A 54 254 129 HOH HOH . E 5 HOH A 55 255 43 HOH HOH . E 5 HOH A 56 256 162 HOH HOH . E 5 HOH A 57 257 14 HOH HOH . E 5 HOH A 58 258 22 HOH HOH . E 5 HOH A 59 259 151 HOH HOH . E 5 HOH A 60 260 169 HOH HOH . E 5 HOH A 61 261 107 HOH HOH . E 5 HOH A 62 262 123 HOH HOH . E 5 HOH A 63 263 155 HOH HOH . E 5 HOH A 64 264 122 HOH HOH . F 5 HOH B 1 801 26 HOH HOH . F 5 HOH B 2 802 82 HOH HOH . F 5 HOH B 3 803 134 HOH HOH . F 5 HOH B 4 804 153 HOH HOH . F 5 HOH B 5 805 135 HOH HOH . F 5 HOH B 6 806 9 HOH HOH . F 5 HOH B 7 807 65 HOH HOH . F 5 HOH B 8 808 23 HOH HOH . F 5 HOH B 9 809 46 HOH HOH . F 5 HOH B 10 810 64 HOH HOH . F 5 HOH B 11 811 161 HOH HOH . F 5 HOH B 12 812 71 HOH HOH . F 5 HOH B 13 813 102 HOH HOH . F 5 HOH B 14 814 15 HOH HOH . F 5 HOH B 15 815 116 HOH HOH . F 5 HOH B 16 816 133 HOH HOH . F 5 HOH B 17 817 177 HOH HOH . F 5 HOH B 18 818 114 HOH HOH . F 5 HOH B 19 819 27 HOH HOH . F 5 HOH B 20 820 49 HOH HOH . F 5 HOH B 21 821 13 HOH HOH . F 5 HOH B 22 822 48 HOH HOH . F 5 HOH B 23 823 93 HOH HOH . F 5 HOH B 24 824 36 HOH HOH . F 5 HOH B 25 825 63 HOH HOH . F 5 HOH B 26 826 2 HOH HOH . F 5 HOH B 27 827 130 HOH HOH . F 5 HOH B 28 828 59 HOH HOH . F 5 HOH B 29 829 19 HOH HOH . F 5 HOH B 30 830 23 HOH HOH . F 5 HOH B 31 831 131 HOH HOH . F 5 HOH B 32 832 4 HOH HOH . F 5 HOH B 33 833 50 HOH HOH . F 5 HOH B 34 834 143 HOH HOH . F 5 HOH B 35 835 6 HOH HOH . F 5 HOH B 36 836 166 HOH HOH . F 5 HOH B 37 837 8 HOH HOH . F 5 HOH B 38 838 174 HOH HOH . F 5 HOH B 39 839 167 HOH HOH . F 5 HOH B 40 840 10 HOH HOH . F 5 HOH B 41 841 27 HOH HOH . F 5 HOH B 42 842 4 HOH HOH . F 5 HOH B 43 843 173 HOH HOH . F 5 HOH B 44 844 12 HOH HOH . F 5 HOH B 45 845 154 HOH HOH . F 5 HOH B 46 846 68 HOH HOH . F 5 HOH B 47 847 31 HOH HOH . F 5 HOH B 48 848 97 HOH HOH . F 5 HOH B 49 849 112 HOH HOH . F 5 HOH B 50 850 38 HOH HOH . F 5 HOH B 51 851 28 HOH HOH . F 5 HOH B 52 852 18 HOH HOH . F 5 HOH B 53 853 184 HOH HOH . F 5 HOH B 54 854 95 HOH HOH . F 5 HOH B 55 855 35 HOH HOH . F 5 HOH B 56 856 47 HOH HOH . F 5 HOH B 57 857 1 HOH HOH . F 5 HOH B 58 858 32 HOH HOH . F 5 HOH B 59 859 8 HOH HOH . F 5 HOH B 60 860 80 HOH HOH . F 5 HOH B 61 861 67 HOH HOH . F 5 HOH B 62 862 15 HOH HOH . F 5 HOH B 63 863 111 HOH HOH . F 5 HOH B 64 864 14 HOH HOH . F 5 HOH B 65 865 58 HOH HOH . F 5 HOH B 66 866 110 HOH HOH . F 5 HOH B 67 867 7 HOH HOH . F 5 HOH B 68 868 20 HOH HOH . F 5 HOH B 69 869 55 HOH HOH . F 5 HOH B 70 870 98 HOH HOH . F 5 HOH B 71 871 96 HOH HOH . F 5 HOH B 72 872 138 HOH HOH . F 5 HOH B 73 873 57 HOH HOH . F 5 HOH B 74 874 142 HOH HOH . F 5 HOH B 75 875 19 HOH HOH . F 5 HOH B 76 876 16 HOH HOH . F 5 HOH B 77 877 147 HOH HOH . F 5 HOH B 78 878 51 HOH HOH . F 5 HOH B 79 879 54 HOH HOH . F 5 HOH B 80 880 86 HOH HOH . F 5 HOH B 81 881 5 HOH HOH . F 5 HOH B 82 882 42 HOH HOH . F 5 HOH B 83 883 106 HOH HOH . F 5 HOH B 84 884 89 HOH HOH . F 5 HOH B 85 885 132 HOH HOH . F 5 HOH B 86 886 3 HOH HOH . F 5 HOH B 87 887 149 HOH HOH . F 5 HOH B 88 888 141 HOH HOH . F 5 HOH B 89 889 30 HOH HOH . F 5 HOH B 90 890 84 HOH HOH . F 5 HOH B 91 891 87 HOH HOH . F 5 HOH B 92 892 11 HOH HOH . F 5 HOH B 93 893 17 HOH HOH . F 5 HOH B 94 894 62 HOH HOH . F 5 HOH B 95 895 5 HOH HOH . F 5 HOH B 96 896 75 HOH HOH . F 5 HOH B 97 897 168 HOH HOH . F 5 HOH B 98 898 176 HOH HOH . F 5 HOH B 99 899 16 HOH HOH . F 5 HOH B 100 900 108 HOH HOH . F 5 HOH B 101 901 120 HOH HOH . F 5 HOH B 102 902 104 HOH HOH . F 5 HOH B 103 903 127 HOH HOH . F 5 HOH B 104 904 91 HOH HOH . F 5 HOH B 105 905 124 HOH HOH . F 5 HOH B 106 906 113 HOH HOH . F 5 HOH B 107 907 90 HOH HOH . F 5 HOH B 108 908 74 HOH HOH . F 5 HOH B 109 909 13 HOH HOH . F 5 HOH B 110 910 160 HOH HOH . F 5 HOH B 111 911 178 HOH HOH . F 5 HOH B 112 912 170 HOH HOH . F 5 HOH B 113 913 144 HOH HOH . F 5 HOH B 114 914 76 HOH HOH . F 5 HOH B 115 915 136 HOH HOH . F 5 HOH B 116 916 103 HOH HOH . F 5 HOH B 117 917 11 HOH HOH . F 5 HOH B 118 918 172 HOH HOH . F 5 HOH B 119 919 181 HOH HOH . F 5 HOH B 120 920 171 HOH HOH . F 5 HOH B 121 921 128 HOH HOH . F 5 HOH B 122 922 3 HOH HOH . F 5 HOH B 123 923 70 HOH HOH . F 5 HOH B 124 924 45 HOH HOH . F 5 HOH B 125 925 159 HOH HOH . F 5 HOH B 126 926 94 HOH HOH . F 5 HOH B 127 927 66 HOH HOH . F 5 HOH B 128 928 145 HOH HOH . F 5 HOH B 129 929 121 HOH HOH . F 5 HOH B 130 930 119 HOH HOH . F 5 HOH B 131 931 182 HOH HOH . F 5 HOH B 132 932 140 HOH HOH . F 5 HOH B 133 933 156 HOH HOH . F 5 HOH B 134 934 183 HOH HOH . F 5 HOH B 135 935 146 HOH HOH . G 5 HOH C 1 201 77 HOH HOH . G 5 HOH C 2 202 40 HOH HOH . G 5 HOH C 3 203 69 HOH HOH . G 5 HOH C 4 204 61 HOH HOH . G 5 HOH C 5 205 139 HOH HOH . G 5 HOH C 6 206 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 89N . . . D 4 -11.815 22.04 0.599 1 15.57 ? C2 89N 101 C 1 HETATM 2 C C3 89N . . . D 4 -14.74 24.499 1.217 1 14.87 ? C3 89N 101 C 1 HETATM 3 C C4 89N . . . D 4 -12.976 22.939 0.415 1 14.87 ? C4 89N 101 C 1 HETATM 4 C C5 89N . . . D 4 -13.581 23.591 1.406 1 14.5 ? C5 89N 101 C 1 HETATM 5 O O1 89N . . . D 4 -14.94 24.784 -0.178 1 14.69 ? O1 89N 101 C 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #